Summarise and Visualise Characteristics of Patients in the OMOP CDM


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Documentation for package ‘CohortCharacteristics’ version 0.5.1

Help Pages

availablePlotColumns Available columns to use in 'facet' and 'colour' arguments in plot functions.
availableTableColumns Available columns to use in 'header', 'groupColumn' and 'hide' arguments in table functions.
benchmarkCohortCharacteristics Benchmark the main functions of CohortCharacteristics package.
mockCohortCharacteristics It creates a mock database for testing CohortCharacteristics package
plotCharacteristics Create a ggplot from the output of summariseCharacteristics.
plotCohortAttrition create a ggplot from the output of summariseLargeScaleCharacteristics.
plotCohortCount Plot the result of summariseCohortCount.
plotCohortOverlap Plot the result of summariseCohortOverlap.
plotCohortTiming Plot summariseCohortTiming results.
plotComparedLargeScaleCharacteristics create a ggplot from the output of summariseLargeScaleCharacteristics.
plotLargeScaleCharacteristics create a ggplot from the output of summariseLargeScaleCharacteristics.
summariseCharacteristics Summarise characteristics of cohorts in a cohort table
summariseCohortAttrition Summarise attrition associated with cohorts in a cohort table
summariseCohortCount Summarise counts for cohorts in a cohort table
summariseCohortOverlap Summarise overlap between cohorts in a cohort table
summariseCohortTiming Summarise timing between entries into cohorts in a cohort table
summariseLargeScaleCharacteristics This function is used to summarise the large scale characteristics of a cohort table
tableCharacteristics Format a summarise_characteristics object into a visual table.
tableCohortAttrition Create a visual table from the output of summariseCohortAttrition.
tableCohortCount Format a summarise_characteristics object into a visual table.
tableCohortOverlap Format a summariseOverlapCohort result into a visual table.
tableCohortTiming Format a summariseCohortTiming result into a visual table.
tableLargeScaleCharacteristics Format a summarise_large_scale_characteristics object into a visual table.