Quartet-package	Quartet-package
.AddSlice	dot-AddSlice
.CheckSize	dot-CheckSize
.CheckSize.list	dot-CheckSize
.CheckSize.multiPhylo	dot-CheckSize
.CheckSize.phylo	dot-CheckSize
.NormalizeStatus	dot-NormalizeStatus
.StatusToArray	dot-StatusToMatrix
.StatusToMatrix	dot-StatusToMatrix
AllPairsQuartetAgreement	Distances
AllPairsQuartetDistance	Distances
AllPairsTripletDistance	Distances
AllQuartets	AllQuartets
AllQuartets.numeric	AllQuartets
AllQuartets.phylo	AllQuartets
BipartitionPoints	QuartetPoints
BipartitionStatus	SplitStatus
CompareBipartitions	CompareSplits
CompareQuartets	CompareQuartets
CompareQuartetsMulti	CompareQuartetsMulti
CompareSplits	CompareSplits
Distances	Distances
DoNotConflict	SimilarityMetrics
ExplicitlyAgree	SimilarityMetrics
ManyToManyQuartetAgreement	QuartetStatus
MarczewskiSteinhaus	SimilarityMetrics
OneToManyQuartetAgreement	Distances
PairSharedQuartetStatus	PairSharedQuartetStatus
PairSharedSplitStatus	PairSharedSplitStatus
PairsQuartetDistance	Distances
PairsTripletDistance	Distances
PlotQuartet	PlotQuartet
Quartet	Quartet-package
QuartetAgreement	Distances
QuartetDistance	Distances
QuartetDivergence	SimilarityMetrics
QuartetPoints	QuartetPoints
QuartetState	QuartetState
QuartetStates	QuartetState
QuartetStates.list	QuartetState
QuartetStates.multiPhylo	QuartetState
QuartetStates.Splits	QuartetState
QuartetStatus	QuartetStatus
RawSymmetricDifference	SimilarityMetrics
ResolvedQuartets	ResolvedQuartets
ResolvedTriplets	ResolvedQuartets
RobinsonFoulds	SimilarityMetrics
SemiStrictJointAssertions	SimilarityMetrics
SharedBipartitionStatus	SplitStatus
SharedQuartetStatus	QuartetStatus
SharedSplitStatus	SplitStatus
SimilarityMetrics	SimilarityMetrics
SimilarityToReference	SimilarityMetrics
SingleTreeQuartetAgreement	QuartetStatus
SplitPoints	QuartetPoints
SplitStatus	SplitStatus
sq_trees	sq_trees
SteelPenny	SimilarityMetrics
StrictJointAssertions	SimilarityMetrics
SymmetricDifference	SimilarityMetrics
SymmetricDifferenceLineEnds	SymmetricDifferenceLineEnds
SymmetricDifferenceLines	SymmetricDifferenceLineEnds
TQAE	TQDist
TQDist	TQDist
tqdist_AllPairsQuartetAgreement	tqdist_QuartetDistance
tqdist_AllPairsQuartetAgreementChar	tqdist_QuartetDistance
tqdist_AllPairsQuartetAgreementEdge	tqdist_QuartetDistance
tqdist_AllPairsQuartetDistance	tqdist_QuartetDistance
tqdist_AllPairsQuartetDistanceChar	tqdist_QuartetDistance
tqdist_AllPairsQuartetDistanceEdge	tqdist_QuartetDistance
tqdist_AllPairsTripletDistance	tqdist_QuartetDistance
tqdist_OneToManyQuartetAgreement	tqdist_QuartetDistance
tqdist_OneToManyQuartetAgreementChar	tqdist_QuartetDistance
tqdist_OneToManyQuartetAgreementEdge	tqdist_QuartetDistance
tqdist_PairsQuartetDistance	tqdist_QuartetDistance
tqdist_PairsTripletDistance	tqdist_QuartetDistance
tqdist_QuartetAgreement	tqdist_QuartetDistance
tqdist_QuartetAgreementChar	tqdist_QuartetDistance
tqdist_QuartetAgreementEdge	tqdist_QuartetDistance
tqdist_QuartetDistance	tqdist_QuartetDistance
tqdist_TripletDistance	tqdist_QuartetDistance
TQFile	TQFile
TripletDistance	Distances
TwoListQuartetAgreement	QuartetStatus
ValidateQuartetFile	ValidateQuartetFile
VisualizeQuartets	VisualizeQuartets
