Normalization and Analysis of Rank Abundance Distributions


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Documentation for package ‘RADanalysis’ version 1.0.1

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gut_nrads Result of normalization of gut_otu_table with 'max_rank = 400' and 'average_over = 2000'.
gut_otu_table Abundance table of gut microbiome.
RADanalysis RADanalysis: A package for normalization of abundance tables to desired number of ranks using MaxRank Normalization method.
RADnormalization Normalizes an abundance vector to the desired number of ranks.
RADnormalization_matrix Normalizes an abundance table to the desired number of ranks
representative_point Computes representative point based on the coordinates of points which are in the same group.
representative_RAD Computes representative normalized RAD of a group of normalized RADs.