assignTax_as_char	assignTax_as_char
assign_tax	assign_tax
assign_taxonomyDada2	assign_taxonomyDada2
convert_asv_matrix_to_objs	convert_asv_matrix_to_objs
countOverlap	countOverlap
createASVSequenceTable	createASVSequenceTable
cut_trim	cut_trim
filter_and_trim	filter_and_trim
format_abund_matrix	format_abund_matrix
format_database	format_database
format_db_16S	format_db_16S
format_db_its	format_db_its
format_db_other1	format_db_other1
format_db_other2	format_db_other2
format_db_rps10	format_db_rps10
get_fastq_paths	get_fastq_paths
get_post_trim_hits	get_post_trim_hits
get_pre_primer_hits	get_pre_primer_hits
get_read_counts	get_read_counts
infer_asvs	infer_asvs
infer_asv_command	infer_asv_command
make_abund_matrix	make_abund_matrix
make_asv_abund_matrix	make_asv_abund_matrix
make_cutadapt_tibble	make_cutadapt_tibble
make_seqhist	make_seqhist
merge_reads_command	merge_reads_command
orient_primers	orient_primers
plot_post_trim_qc	plot_post_trim_qc
plot_qc	plot_qc
prepare_metadata_table	prepare_metadata_table
prepare_reads	prepare_reads
prep_abund_matrix	prep_abund_matrix
primer_check	primer_check
process_single_barcode	process_single_barcode
read_fastq	read_fastq
read_parameters_table	read_parameters_table
read_prefilt_fastq	read_prefilt_fastq
remove_ns	remove_ns
run_cutadapt	run_cutadapt
setup_directories	setup_directories
