# Simultaneous Analysis of Multiplexed Metabarcodes

## Documentation for package ‘demulticoder’ version 0.1.2

- DESCRIPTION file.
- Package NEWS.

## Help Pages

assign_tax | Assign taxonomy functions
convert_asv_matrix_to_objs | Filter ASV abundance matrix and convert to 'taxmap' and 'phyloseq' objects
cut_trim | Main command to trim primers using 'Cutadapt' and core 'DADA2' functions
make_asv_abund_matrix | Make an amplified sequence variant (ASV) abundance matrix for each of the input barcodes
prepare_reads | Prepare reads for primer trimming using 'Cutadapt'