Last updated on 2025-03-12 07:56:28 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.3.0 | 14.66 | 111.53 | 126.19 | OK | |
| r-devel-linux-x86_64-debian-gcc | 2.3.0 | 9.28 | 79.12 | 88.40 | OK | |
| r-devel-linux-x86_64-fedora-clang | 2.3.0 | 198.19 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 2.3.0 | 276.63 | OK | |||
| r-devel-macos-arm64 | 2.3.0 | 52.00 | OK | |||
| r-devel-macos-x86_64 | 2.3.0 | 125.00 | OK | |||
| r-devel-windows-x86_64 | 2.3.0 | 13.00 | 112.00 | 125.00 | OK | |
| r-patched-linux-x86_64 | 2.3.0 | OK | ||||
| r-release-linux-x86_64 | 2.3.0 | 11.17 | 104.13 | 115.30 | OK | |
| r-release-macos-arm64 | 2.3.0 | 50.00 | OK | |||
| r-release-macos-x86_64 | 2.3.0 | 22.00 | ERROR | |||
| r-release-windows-x86_64 | 2.3.0 | 15.00 | 126.00 | 141.00 | OK | |
| r-oldrel-macos-arm64 | 2.3.0 | 15.00 | ERROR | |||
| r-oldrel-macos-x86_64 | 2.3.0 | 24.00 | ERROR | |||
| r-oldrel-windows-x86_64 | 2.3.0 | 1.00 | 11.00 | 12.00 | ERROR |
Version: 2.3.0
Check: examples
Result: ERROR
Running examples in ‘CleanBSequences-Ex.R’ failed
The error most likely occurred in:
> ### Name: DNAStringSetOPR
> ### Title: Curing of biological sequences
> ### Aliases: DNAStringSetOPR
>
> ### ** Examples
>
> SEQs = readDNAStringSet(system.file("sequences","SeqInputOPR.fasta", package = "CleanBSequences"))
> PrimerR= DNAString ("GACTGCGTACCATGC")
> DNAStringSetOPR (SEQs,PrimerR)
DNAStringSet object of length 2:
width seq names
[1] 116 GCCTCGCCTCCCTCTTTGATCAG...CCTTTGCAATCTTCACAAGGTGG 170522-033_K03_11...
[2] 113 GTCTACTCGATCGTGATCCGGTA...CCTTTGCAATCTTCACAAGGTGG 170522-033_C05_15...
Local PairwiseAlignmentsSingleSubject (1 of 2)
Error in h(simpleError(msg, call)) :
error in evaluating the argument 'table' in selecting a method for function 'match': object 'DNA_AND_RNA_COLORED_LETTERS' not found
Calls: DNAStringSetOPR ... add_colors.DNA -> vapply -> FUN -> match -> .handleSimpleError -> h
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 2.3.0
Check: package dependencies
Result: ERROR
Package required but not available: ‘pwalign’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavors: r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64