Last updated on 2025-03-10 07:50:47 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.1 | 4.59 | 460.69 | 465.28 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.1.1 | 3.19 | 299.79 | 302.98 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.1.1 | 674.36 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.1.1 | ERROR | ||||
| r-devel-macos-arm64 | 1.1.1 | 276.00 | OK | |||
| r-devel-macos-x86_64 | 1.1.1 | 631.00 | OK | |||
| r-devel-windows-x86_64 | 1.1.1 | 7.00 | 485.00 | 492.00 | OK | |
| r-patched-linux-x86_64 | 1.1.1 | 4.98 | 435.35 | 440.33 | OK | |
| r-release-linux-x86_64 | 1.1.1 | 4.67 | 438.61 | 443.28 | OK | |
| r-release-macos-arm64 | 1.1.1 | 267.00 | OK | |||
| r-release-macos-x86_64 | 1.1.1 | 450.00 | OK | |||
| r-release-windows-x86_64 | 1.1.1 | 6.00 | 492.00 | 498.00 | OK | |
| r-oldrel-macos-arm64 | 1.1.1 | OK | ||||
| r-oldrel-macos-x86_64 | 1.1.1 | 683.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.1.1 | 7.00 | 593.00 | 600.00 | OK |
Version: 1.1.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [9m/12m]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(DImodelsMulti)
>
> test_check("DImodelsMulti")
Note:
Method Used = REML
Correlation Structure Used = un@CS
Average Term Model
Theta estimate(s) = Y1:1.0208, Y2:0.865, Y3:0.9749
Generalized least squares fit by REML
Model: value ~ 0 + func:time:((p1_ID + p2_ID + p3_ID + p4_ID + AV))
AIC BIC logLik
7927.124 8100.534 -3932.562
Multivariate Correlation Structure: General
Formula: ~0 | plot
Parameter estimate(s):
Correlation:
1 2
2 0.611
3 -0.311 -0.364
Repeated Measure Correlation Structure: Compound symmetry
Formula: ~0 | plot
Parameter estimate(s):
Rho
0.318417
Table: Fixed Effect Coefficients
Beta Std. Error t-value p-value Signif
------------------- -------- ----------- -------- ----------- -------
funcY1:time1:p1_ID -1.398 0.401 -3.483 0.0005063 ***
funcY2:time1:p1_ID +0.469 0.392 1.198 0.2311
funcY3:time1:p1_ID +0.956 0.399 2.394 0.01677 *
funcY1:time2:p1_ID +0.063 0.401 0.156 0.876
funcY2:time2:p1_ID +2.674 0.392 6.822 1.19e-11 ***
funcY3:time2:p1_ID -0.500 0.399 -1.253 0.2105
funcY1:time1:p2_ID +4.777 0.372 12.841 2.567e-36 ***
funcY2:time1:p2_ID +4.398 0.363 12.129 1.03e-32 ***
funcY3:time1:p2_ID +6.716 0.370 18.158 2.731e-68 ***
funcY1:time2:p2_ID +4.890 0.372 13.145 6.59e-38 ***
funcY2:time2:p2_ID +2.761 0.363 7.614 4.081e-14 ***
funcY3:time2:p2_ID +6.862 0.370 18.552 5.504e-71 ***
funcY1:time1:p3_ID +2.674 0.404 6.626 4.425e-11 ***
funcY2:time1:p3_ID -0.635 0.393 -1.616 0.1062
funcY3:time1:p3_ID +3.333 0.401 8.304 1.844e-16 ***
funcY1:time2:p3_ID +4.304 0.404 10.663 7.475e-26 ***
funcY2:time2:p3_ID -3.298 0.393 -8.395 8.707e-17 ***
funcY3:time2:p3_ID +3.067 0.401 7.642 3.312e-14 ***
funcY1:time1:p4_ID -0.887 0.453 -1.959 0.05029 +
funcY2:time1:p4_ID +0.424 0.445 0.953 0.3408
funcY3:time1:p4_ID +4.930 0.452 10.919 5.394e-27 ***
funcY1:time2:p4_ID -2.571 0.453 -5.677 1.568e-08 ***
funcY2:time2:p4_ID +2.048 0.445 4.605 4.384e-06 ***
funcY3:time2:p4_ID +3.588 0.452 7.946 3.205e-15 ***
funcY1:time1:AV +2.969 1.025 2.897 0.003805 **
funcY2:time1:AV +5.733 0.705 8.130 7.503e-16 ***
funcY3:time1:AV +5.852 0.925 6.326 3.104e-10 ***
funcY1:time2:AV +35.817 1.025 34.952 5.123e-209 ***
funcY2:time2:AV +3.570 0.705 5.063 4.515e-07 ***
funcY3:time2:AV +17.841 0.925 19.285 4.235e-76 ***
Signif codes: 0-0.001 '***', 0.001-0.01 '**', 0.01-0.05 '*', 0.05-0.1 '+', 0.1-1.0 ' '
Degrees of freedom: 2016 total; 1986 residual
Residual standard error: 1.949179
$Multivariate
Marginal variance covariance matrix
[,1] [,2] [,3]
[1,] 4.9138 2.3576 -1.3793
[2,] 2.3576 3.0326 -1.2701
[3,] -1.3793 -1.2701 4.0112
Standard Deviations: 2.2167 1.7414 2.0028
$`Repeated Measure`
Marginal variance covariance matrix
[,1] [,2]
[1,] 4.6292 1.4740
[2,] 1.4740 4.6292
Standard Deviations: 2.1516 2.1516
$Combined
Marginal variance covariance matrix
Y1:1 Y1:2 Y2:1 Y2:2 Y3:1 Y3:2
Y1:1 3.79930 1.20980 2.32040 0.73885 -1.18040 -0.37586
Y1:2 1.20980 3.79930 0.73885 2.32040 -0.37586 -1.18040
Y2:1 2.32040 0.73885 3.79930 1.20980 -1.38350 -0.44053
Y2:2 0.73885 2.32040 1.20980 3.79930 -0.44053 -1.38350
Y3:1 -1.18040 -0.37586 -1.38350 -0.44053 3.79930 1.20980
Y3:2 -0.37586 -1.18040 -0.44053 -1.38350 1.20980 3.79930
Standard Deviations: 1.9492 1.9492 1.9492 1.9492 1.9492 1.9492
Generalized least squares fit by REML
Model: value ~ 0 + func:time:((p1_ID + p2_ID + p3_ID + p4_ID + AV))
Data: data
AIC BIC logLik
7927.124 8100.534 -3932.562
Correlation Structure: General
Formula: ~0 | plot
Parameter estimate(s):
Correlation:
1 2 3 4 5
2 0.318
3 0.611 0.194
4 0.194 0.611 0.318
5 -0.311 -0.099 -0.364 -0.116
6 -0.099 -0.311 -0.116 -0.364 0.318
Coefficients:
Value Std.Error t-value p-value
funcY1:time1:p1_ID -1.39779 0.4013020 -3.48313 0.0005
funcY2:time1:p1_ID 0.46946 0.3919317 1.19781 0.2311
funcY3:time1:p1_ID 0.95611 0.3994207 2.39375 0.0168
funcY1:time2:p1_ID 0.06264 0.4013020 0.15610 0.8760
funcY2:time2:p1_ID 2.67366 0.3919317 6.82175 0.0000
funcY3:time2:p1_ID -0.50033 0.3994207 -1.25264 0.2105
funcY1:time1:p2_ID 4.77678 0.3719836 12.84137 0.0000
funcY2:time1:p2_ID 4.39765 0.3625691 12.12913 0.0000
funcY3:time1:p2_ID 6.71595 0.3698618 18.15799 0.0000
funcY1:time2:p2_ID 4.88988 0.3719836 13.14541 0.0000
funcY2:time2:p2_ID 2.76061 0.3625691 7.61403 0.0000
funcY3:time2:p2_ID 6.86181 0.3698618 18.55237 0.0000
funcY1:time1:p3_ID 2.67448 0.4036265 6.62613 0.0000
funcY2:time1:p3_ID -0.63478 0.3928039 -1.61603 0.1062
funcY3:time1:p3_ID 3.33256 0.4013398 8.30359 0.0000
funcY1:time2:p3_ID 4.30388 0.4036265 10.66302 0.0000
funcY2:time2:p3_ID -3.29772 0.3928039 -8.39534 0.0000
funcY3:time2:p3_ID 3.06694 0.4013398 7.64176 0.0000
funcY1:time1:p4_ID -0.88693 0.4528202 -1.95867 0.0503
funcY2:time1:p4_ID 0.42381 0.4448121 0.95278 0.3408
funcY3:time1:p4_ID 4.93027 0.4515411 10.91876 0.0000
funcY1:time2:p4_ID -2.57087 0.4528202 -5.67746 0.0000
funcY2:time2:p4_ID 2.04841 0.4448121 4.60512 0.0000
funcY3:time2:p4_ID 3.58783 0.4515411 7.94575 0.0000
funcY1:time1:AV 2.96892 1.0247246 2.89728 0.0038
funcY2:time1:AV 5.73299 0.7052083 8.12950 0.0000
funcY3:time1:AV 5.85220 0.9251268 6.32583 0.0000
funcY1:time2:AV 35.81655 1.0247246 34.95236 0.0000
funcY2:time2:AV 3.57028 0.7052083 5.06273 0.0000
funcY3:time2:AV 17.84102 0.9251268 19.28494 0.0000
Theta values: Y1:1.0208, Y2:0.865, Y3:0.9749
Correlation:
fY1:1:1 fY2:1:1 fY3:1:1 fY1:2:1 fY2:2:1 fY3:2:1 fY1:1:2
funcY2:time1:p1_ID 0.608
funcY3:time1:p1_ID -0.309 -0.362
funcY1:time2:p1_ID 0.318 0.194 -0.098
funcY2:time2:p1_ID 0.194 0.318 -0.115 0.608
funcY3:time2:p1_ID -0.098 -0.115 0.318 -0.309 -0.362
funcY1:time1:p2_ID 0.220 0.121 -0.066 0.070 0.039 -0.021
funcY2:time1:p2_ID 0.118 0.180 -0.069 0.038 0.057 -0.022 0.608
funcY3:time1:p2_ID -0.065 -0.070 0.212 -0.021 -0.022 0.067 -0.309
funcY1:time2:p2_ID 0.070 0.039 -0.021 0.220 0.121 -0.066 0.318
funcY2:time2:p2_ID 0.038 0.057 -0.022 0.118 0.180 -0.069 0.194
funcY3:time2:p2_ID -0.021 -0.022 0.067 -0.065 -0.070 0.212 -0.098
funcY1:time1:p3_ID 0.217 0.118 -0.065 0.069 0.038 -0.021 0.190
funcY2:time1:p3_ID 0.117 0.177 -0.068 0.037 0.056 -0.022 0.101
funcY3:time1:p3_ID -0.064 -0.069 0.209 -0.021 -0.022 0.067 -0.056
funcY1:time2:p3_ID 0.069 0.038 -0.021 0.217 0.118 -0.065 0.061
funcY2:time2:p3_ID 0.037 0.056 -0.022 0.117 0.177 -0.068 0.032
funcY3:time2:p3_ID -0.021 -0.022 0.067 -0.064 -0.069 0.209 -0.018
funcY1:time1:p4_ID 0.267 0.149 -0.080 0.085 0.048 -0.026 0.168
funcY2:time1:p4_ID 0.152 0.236 -0.089 0.048 0.075 -0.028 0.092
funcY3:time1:p4_ID -0.081 -0.088 0.261 -0.026 -0.028 0.083 -0.050
funcY1:time2:p4_ID 0.085 0.048 -0.026 0.267 0.149 -0.080 0.054
funcY2:time2:p4_ID 0.048 0.075 -0.028 0.152 0.236 -0.089 0.029
funcY3:time2:p4_ID -0.026 -0.028 0.083 -0.081 -0.088 0.261 -0.016
funcY1:time1:AV -0.592 -0.341 0.180 -0.189 -0.109 0.057 -0.555
funcY2:time1:AV -0.357 -0.565 0.211 -0.114 -0.180 0.067 -0.335
funcY3:time1:AV 0.181 0.203 -0.587 0.058 0.065 -0.187 0.170
funcY1:time2:AV -0.189 -0.109 0.057 -0.592 -0.341 0.180 -0.177
funcY2:time2:AV -0.114 -0.180 0.067 -0.357 -0.565 0.211 -0.107
funcY3:time2:AV 0.058 0.065 -0.187 0.181 0.203 -0.587 0.054
fY2:1:2 fY3:1:2 fY1:2:2 fY2:2:2 fY3:2:2 fY1:1:3 fY2:1:3
funcY2:time1:p1_ID
funcY3:time1:p1_ID
funcY1:time2:p1_ID
funcY2:time2:p1_ID
funcY3:time2:p1_ID
funcY1:time1:p2_ID
funcY2:time1:p2_ID
funcY3:time1:p2_ID -0.363
funcY1:time2:p2_ID 0.194 -0.098
funcY2:time2:p2_ID 0.318 -0.115 0.608
funcY3:time2:p2_ID -0.115 0.318 -0.309 -0.363
funcY1:time1:p3_ID 0.099 -0.056 0.061 0.032 -0.018
funcY2:time1:p3_ID 0.147 -0.059 0.032 0.047 -0.019 0.608
funcY3:time1:p3_ID -0.058 0.181 -0.018 -0.018 0.058 -0.309 -0.362
funcY1:time2:p3_ID 0.032 -0.018 0.190 0.099 -0.056 0.318 0.194
funcY2:time2:p3_ID 0.047 -0.019 0.101 0.147 -0.059 0.194 0.318
funcY3:time2:p3_ID -0.018 0.058 -0.056 -0.058 0.181 -0.098 -0.115
funcY1:time1:p4_ID 0.086 -0.049 0.054 0.027 -0.016 0.253 0.139
funcY2:time1:p4_ID 0.130 -0.053 0.029 0.041 -0.017 0.143 0.219
funcY3:time1:p4_ID -0.050 0.161 -0.016 -0.016 0.051 -0.076 -0.082
funcY1:time2:p4_ID 0.027 -0.016 0.168 0.086 -0.049 0.081 0.044
funcY2:time2:p4_ID 0.041 -0.017 0.092 0.130 -0.053 0.046 0.070
funcY3:time2:p4_ID -0.016 0.051 -0.050 -0.050 0.161 -0.024 -0.026
funcY1:time1:AV -0.314 0.168 -0.177 -0.100 0.053 -0.606 -0.348
funcY2:time1:AV -0.521 0.197 -0.107 -0.166 0.063 -0.366 -0.576
funcY3:time1:AV 0.187 -0.548 0.054 0.060 -0.174 0.185 0.207
funcY1:time2:AV -0.100 0.053 -0.555 -0.314 0.168 -0.193 -0.111
funcY2:time2:AV -0.166 0.063 -0.335 -0.521 0.197 -0.116 -0.183
funcY3:time2:AV 0.060 -0.174 0.170 0.187 -0.548 0.059 0.066
fY3:1:3 fY1:2:3 fY2:2:3 fY3:2:3 fY1:1:4 fY2:1:4 fY3:1:4
funcY2:time1:p1_ID
funcY3:time1:p1_ID
funcY1:time2:p1_ID
funcY2:time2:p1_ID
funcY3:time2:p1_ID
funcY1:time1:p2_ID
funcY2:time1:p2_ID
funcY3:time1:p2_ID
funcY1:time2:p2_ID
funcY2:time2:p2_ID
funcY3:time2:p2_ID
funcY1:time1:p3_ID
funcY2:time1:p3_ID
funcY3:time1:p3_ID
funcY1:time2:p3_ID -0.098
funcY2:time2:p3_ID -0.115 0.608
funcY3:time2:p3_ID 0.318 -0.309 -0.362
funcY1:time1:p4_ID -0.076 0.081 0.044 -0.024
funcY2:time1:p4_ID -0.084 0.046 0.070 -0.027 0.608
funcY3:time1:p4_ID 0.247 -0.024 -0.026 0.079 -0.309 -0.362
funcY1:time2:p4_ID -0.024 0.253 0.139 -0.076 0.318 0.194 -0.098
funcY2:time2:p4_ID -0.027 0.143 0.219 -0.084 0.194 0.318 -0.115
funcY3:time2:p4_ID 0.079 -0.076 -0.082 0.247 -0.098 -0.115 0.318
funcY1:time1:AV 0.184 -0.193 -0.111 0.058 -0.597 -0.348 0.182
funcY2:time1:AV 0.216 -0.116 -0.183 0.069 -0.360 -0.577 0.213
funcY3:time1:AV -0.600 0.059 0.066 -0.191 0.183 0.207 -0.594
funcY1:time2:AV 0.058 -0.606 -0.348 0.184 -0.190 -0.111 0.058
funcY2:time2:AV 0.069 -0.366 -0.576 0.216 -0.115 -0.184 0.068
funcY3:time2:AV -0.191 0.185 0.207 -0.600 0.058 0.066 -0.189
fY1:2:4 fY2:2:4 fY3:2:4 fY1:1:A fY2:1:A fY3:1:A fY1:2:A
funcY2:time1:p1_ID
funcY3:time1:p1_ID
funcY1:time2:p1_ID
funcY2:time2:p1_ID
funcY3:time2:p1_ID
funcY1:time1:p2_ID
funcY2:time1:p2_ID
funcY3:time1:p2_ID
funcY1:time2:p2_ID
funcY2:time2:p2_ID
funcY3:time2:p2_ID
funcY1:time1:p3_ID
funcY2:time1:p3_ID
funcY3:time1:p3_ID
funcY1:time2:p3_ID
funcY2:time2:p3_ID
funcY3:time2:p3_ID
funcY1:time1:p4_ID
funcY2:time1:p4_ID
funcY3:time1:p4_ID
funcY1:time2:p4_ID
funcY2:time2:p4_ID 0.608
funcY3:time2:p4_ID -0.309 -0.362
funcY1:time1:AV -0.190 -0.111 0.058
funcY2:time1:AV -0.115 -0.184 0.068 0.603
funcY3:time1:AV 0.058 0.066 -0.189 -0.306 -0.360
funcY1:time2:AV -0.597 -0.348 0.182 0.318 0.192 -0.097
funcY2:time2:AV -0.360 -0.577 0.213 0.192 0.318 -0.114 0.603
funcY3:time2:AV 0.183 0.207 -0.594 -0.097 -0.114 0.318 -0.306
fY2:2:A
funcY2:time1:p1_ID
funcY3:time1:p1_ID
funcY1:time2:p1_ID
funcY2:time2:p1_ID
funcY3:time2:p1_ID
funcY1:time1:p2_ID
funcY2:time1:p2_ID
funcY3:time1:p2_ID
funcY1:time2:p2_ID
funcY2:time2:p2_ID
funcY3:time2:p2_ID
funcY1:time1:p3_ID
funcY2:time1:p3_ID
funcY3:time1:p3_ID
funcY1:time2:p3_ID
funcY2:time2:p3_ID
funcY3:time2:p3_ID
funcY1:time1:p4_ID
funcY2:time1:p4_ID
funcY3:time1:p4_ID
funcY1:time2:p4_ID
funcY2:time2:p4_ID
funcY3:time2:p4_ID
funcY1:time1:AV
funcY2:time1:AV
funcY3:time1:AV
funcY1:time2:AV
funcY2:time2:AV
funcY3:time2:AV -0.360
Standardized residuals:
Min Q1 Med Q3 Max
-4.15977769 -0.38670617 -0.03622075 0.34007790 6.72648550
Residual standard error: 1.949179
Degrees of freedom: 2016 total; 1986 residual
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 38 ]
>
> proc.time()
user system elapsed
534.332 2.970 704.392
*** caught segfault ***
address 0x4fb0, cause 'memory not mapped'
An irrecoverable exception occurred. R is aborting now ...
Flavor: r-devel-linux-x86_64-fedora-gcc