Last updated on 2024-12-18 19:49:12 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.8.0 | 8.58 | 662.92 | 671.50 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.8.0 | 5.35 | 459.95 | 465.30 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.8.0 | 1064.47 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.8.0 | 1045.43 | OK | |||
| r-devel-windows-x86_64 | 0.8.0 | 10.00 | 380.00 | 390.00 | OK | |
| r-patched-linux-x86_64 | 0.8.0 | 9.74 | 626.30 | 636.04 | OK | |
| r-release-linux-x86_64 | 0.8.0 | 8.10 | 620.90 | 629.00 | OK | |
| r-release-macos-arm64 | 0.8.0 | 157.00 | OK | |||
| r-release-macos-x86_64 | 0.8.0 | 227.00 | OK | |||
| r-release-windows-x86_64 | 0.7.1 | 12.00 | 321.00 | 333.00 | ERROR | |
| r-oldrel-macos-arm64 | 0.8.0 | 196.00 | OK | |||
| r-oldrel-macos-x86_64 | 0.8.0 | 312.00 | OK | |||
| r-oldrel-windows-x86_64 | 0.8.0 | 12.00 | 517.00 | 529.00 | OK |
Version: 0.7.1
Check: dependencies in R code
Result: WARN
Missing or unexported object: 'visOmopResults::optionsVisOmopTable'
Flavor: r-release-windows-x86_64
Version: 0.7.1
Check: examples
Result: ERROR
Running examples in 'DrugUtilisation-Ex.R' failed
The error most likely occurred in:
> ### Name: defaultTableOptions
> ### Title: Additional arguments for the table functions.
> ### Aliases: defaultTableOptions
>
> ### ** Examples
>
> {
+ defaultTableOptions()
+ }
Error: 'optionsVisOmopTable' is not an exported object from 'namespace:visOmopResults'
Execution halted
Flavor: r-release-windows-x86_64
Version: 0.7.1
Check: tests
Result: ERROR
Running 'testthat.R' [121s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(DrugUtilisation)
>
> test_check("DrugUtilisation")
Starting 2 test processes
[ FAIL 4 | WARN 24 | SKIP 50 | PASS 69 ]
══ Skipped tests (50) ══════════════════════════════════════════════════════════
• On CRAN (50): 'test-benchmarkDrugUtilisation.R:2:3',
'test-addDrugUtilisation.R:3:3', 'test-addDrugUtilisation.R:156:3',
'test-addDrugUtilisation.R:196:3', 'test-dailyDose.R:2:3',
'test-generateDrugUtilisationCohortSet.R:2:3',
'test-generateDrugUtilisationCohortSet.R:23:3',
'test-generatedAtcCohortSet.R:2:3',
'test-generatedIngredientCohortSet.R:2:3',
'test-generatedIngredientCohortSet.R:39:3',
'test-generatedIngredientCohortSet.R:54:3',
'test-generatedIngredientCohortSet.R:69:3',
'test-generatedIngredientCohortSet.R:98:3', 'test-drugUse.R:2:3',
'test-drugUse.R:42:3', 'test-drugUse.R:259:3', 'test-drugUse.R:463:3',
'test-drugUse.R:608:3', 'test-drugUse.R:860:3', 'test-drugUse.R:883:3',
'test-drugUse.R:932:3', 'test-drugUse.R:967:3', 'test-drugUse.R:1025:3',
'test-patterns.R:2:3', 'test-plotProportionOfPatientsCovered.R:2:3',
'test-plotProportionOfPatientsCovered.R:58:3',
'test-plotProportionOfPatientsCovered.R:100:3', 'test-plotTreatment.R:2:3',
'test-plots.R:2:3', 'test-readConceptList.R:2:3', 'test-require.R:2:3',
'test-require.R:143:3', 'test-require.R:324:3', 'test-require.R:432:3',
'test-require.R:526:3', 'test-require.R:597:3', 'test-indication.R:2:3',
'test-indication.R:202:3', 'test-indication.R:364:3',
'test-indication.R:481:3',
'test-summariseProportionOfPatientsCovered.R:94:3',
'test-summariseProportionOfPatientsCovered.R:170:3',
'test-summariseProportionOfPatientsCovered.R:277:3',
'test-summariseProportionOfPatientsCovered.R:497:3',
'test-summariseProportionOfPatientsCovered.R:550:3', 'test-tables.R:2:3',
'test-tables.R:132:3', 'test-tables.R:271:3', 'test-tables.R:393:3',
'test-tables.R:502:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-summariseDrugRestart.R:76:3'): summarise drug restart ────────
is.na(settings(resultsCohort)$censor_date) is not TRUE
`actual`:
`expected`: TRUE
── Failure ('test-summariseDrugRestart.R:83:3'): summarise drug restart ────────
unique(resultsSup$estimate_value) (`actual`) not equal to c(NA_character_, "0") (`expected`).
`actual`: "-" "0"
`expected`: NA "0"
── Failure ('test-summariseTreatment.R:49:3'): test summariseTreatment ─────────
all(...) is not TRUE
`actual`: FALSE
`expected`: TRUE
── Failure ('test-summariseDrugUtilisation.R:65:3'): summariseDrugUtilisation works ──
all(...) is not TRUE
`actual`: FALSE
`expected`: TRUE
[ FAIL 4 | WARN 24 | SKIP 50 | PASS 69 ]
Error: Test failures
Execution halted
Flavor: r-release-windows-x86_64
Version: 0.7.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'create_cohorts.Rmd' using rmarkdown
--- finished re-building 'create_cohorts.Rmd'
--- re-building 'drug_utilisation.Rmd' using rmarkdown
Quitting from lines 277-278 [unnamed-chunk-9] (drug_utilisation.Rmd)
Error: processing vignette 'drug_utilisation.Rmd' failed with diagnostics:
'optionsVisOmopTable' is not an exported object from 'namespace:visOmopResults'
--- failed re-building 'drug_utilisation.Rmd'
SUMMARY: processing the following file failed:
'drug_utilisation.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-windows-x86_64