CRAN Package Check Results for Package TreatmentPatterns

Last updated on 2025-03-10 18:52:56 CET.

Flavor	Version	T_install	T_check	T_total	Status
r-devel-linux-x86_64-debian-clang	3.0.0	22.26	139.35	161.61	ERROR
r-devel-linux-x86_64-debian-gcc	3.0.0	14.34	97.11	111.45	ERROR
r-devel-linux-x86_64-fedora-clang	3.0.0			274.65	ERROR
r-devel-linux-x86_64-fedora-gcc	3.0.0			270.94	ERROR
r-devel-macos-arm64	3.0.1			210.00	OK
r-devel-macos-x86_64	3.0.0			595.00	OK
r-devel-windows-x86_64	3.0.0	20.00	252.00	272.00	ERROR
r-patched-linux-x86_64	3.0.0	20.23	129.41	149.64	ERROR
r-release-linux-x86_64	3.0.0	17.42	129.32	146.74	ERROR
r-release-macos-arm64	3.0.0			316.00	OK
r-release-macos-x86_64	3.0.1			447.00	OK
r-release-windows-x86_64	3.0.0	22.00	272.00	294.00	ERROR
r-oldrel-macos-arm64	3.0.0			262.00	OK
r-oldrel-macos-x86_64	3.0.1			525.00	OK
r-oldrel-windows-x86_64	3.0.0	30.00	184.00	214.00	ERROR

Check Details

Version: 3.0.0
Check: tests
Result: ERROR Running ‘testthat.R’ [59s/44s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(TreatmentPatterns) > > test_check("TreatmentPatterns") Starting 2 test processes [ FAIL 49 | WARN 0 | SKIP 27 | PASS 89 ] ══ Skipped tests (27) ══════════════════════════════════════════════════════════ • Eunomia [2.0.0] bug (8): 'test-CDMInterfaceDBC.R:6:3', 'test-CDMInterfaceDBC.R:24:3', 'test-CDMInterfaceDBC.R:53:3', 'test-CDMInterfaceDBC.R:80:3', 'test-CDMInterfaceDBC.R:117:3', 'test-computePathways.R:8:3', 'test-computePathways.R:53:3', 'test-multipleCohortTables.R:68:3' • On CRAN (12): 'test-CDMInterface.R:7:3', 'test-export.R:314:3', 'test-export.R:381:3', 'test-export.R:428:3', 'test-export.R:470:3', 'test-export.R:514:3', 'test-export.R:589:3', 'test-export.R:657:3', 'test-export.R:685:3', 'test-pathwaysLogical.R:225:3', 'test-pathwaysMultipleTargetsLogical.R:19:3', 'test-pathwaysMultipleTargetsLogical.R:216:3' • On Linux (7): 'test-computePathways.R:720:3', 'test-executeTreatmentPatterns.R:10:3', 'test-export.R:30:3', 'test-export.R:99:3', 'test-export.R:149:3', 'test-export.R:193:3', 'test-export.R:237:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-CDMInterfaceCDMC.R:8:3'): (code run outside of `test_that()`) ── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-CDMInterfaceCDMC.R:8:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:32:3'): computePathways CDMConnector ───────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:32:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:78:3'): includeTreatments ──────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:78:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:122:3'): indexDateOffset ───────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:122:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:177:3'): minEraDuration ────────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:177:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:192:3'): splitEventCohorts ─────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:192:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:230:3'): splitTime ─────────────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:230:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:245:3'): eraCollapseSize ───────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:245:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:277:3'): combinationWindow ─────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:277:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:294:3'): minPostCombinationDuration: 30 ────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-computePathways.R:294:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:403:3'): filterTreatments ──────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:403:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:555:3'): FRFS combination ──────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-computePathways.R:555:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:608:3'): LRFS combination ──────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-computePathways.R:608:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:662:3'): No target records ─────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. ├─base::suppressWarnings(generateCohortTableCDMC()) at test-computePathways.R:662:3 2. │ └─base::withCallingHandlers(...) 3. └─TreatmentPatterns:::generateCohortTableCDMC() 4. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 5. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 6. └─duckdb (local) .local(drv, ...) 7. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:682:3'): Empty cohort table ────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. ├─base::suppressWarnings(generateCohortTableCDMC()) at test-computePathways.R:682:3 2. │ └─base::withCallingHandlers(...) 3. └─TreatmentPatterns:::generateCohortTableCDMC() 4. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 5. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 6. └─duckdb (local) .local(drv, ...) 7. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:704:3'): No target defined ─────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. ├─base::suppressWarnings(generateCohortTableCDMC()) at test-computePathways.R:704:3 2. │ └─base::withCallingHandlers(...) 3. └─TreatmentPatterns:::generateCohortTableCDMC() 4. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 5. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 6. └─duckdb (local) .local(drv, ...) 7. └─duckdb:::path_normalize(dbdir) ── Error ('test-executeTreatmentPatterns.R:28:3'): CDMConnector ──────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-executeTreatmentPatterns.R:28:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-multipleCohortTables.R:7:3'): multiple cohort_tables ─────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-multipleCohortTables.R:7:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:7:3'): A ───────────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:7:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:49:3'): A-B ────────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:49:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:93:3'): A-B-C ──────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:93:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:137:3'): A-B+C ─────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:137:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:181:3'): A+B-C ─────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:181:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:269:3'): A-B-A-B ───────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:269:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:314:3'): A-B-A ─────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:314:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:358:3'): A-B-B, collapse to A-B ────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:358:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:402:3'): A-B-B ─────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:402:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:446:3'): A+B-A ─────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:446:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:490:3'): A-A-B ─────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:490:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:534:3'): A-A-B, collapse to A-B ────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:534:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:578:3'): A+B-A+B, collapse to A+B ──────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:578:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:623:3'): A+B-A+B ───────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:623:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:668:3'): A-A+B-B ───────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:668:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:711:3'): A-A-C-A+B+C-C ─────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:711:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:755:3'): A-A+B+C-A+C-C ─────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:755:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:799:3'): A-A+C-C-B+C-C ─────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:799:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:844:3'): start event == start target ───────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:844:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:886:3'): end event == end target ───────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:886:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:928:3'): start-end event == start-end target ── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:928:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:970:3'): start event < start target ────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:970:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:1012:3'): start event < start target, periodPrior = -60 ── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1012:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:1054:3'): start event > end target ─────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1054:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:1097:3'): collapse A-B-B-B to A-A+B-B ──────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1097:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:1143:3'): collapse A-B-B-B to A-B ──────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1143:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:1187:3'): collapse A-A-B-B to A-B ──────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1187:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:1231:3'): collapse A-A-B-B to A-B 2 ────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1231:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:1275:3'): collapse A-A-B-B to A+B 2 ────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1275:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysMultipleTargetsLogical.R:311:3'): Events outside target ── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysMultipleTargetsLogical.R:311:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-TreatmentPatternsResults.R:3:3'): Method: new(data.frame) ────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. ├─base::suppressWarnings(generateCohortTableCDMC()) at test-TreatmentPatternsResults.R:3:3 2. │ └─base::withCallingHandlers(...) 3. └─TreatmentPatterns:::generateCohortTableCDMC() 4. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 5. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 6. └─duckdb (local) .local(drv, ...) 7. └─duckdb:::path_normalize(dbdir) [ FAIL 49 | WARN 0 | SKIP 27 | PASS 89 ] Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-debian-clang

Version: 3.0.0
Check: tests
Result: ERROR Running ‘testthat.R’ [39s/28s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(TreatmentPatterns) > > test_check("TreatmentPatterns") Starting 2 test processes [ FAIL 49 | WARN 0 | SKIP 27 | PASS 89 ] ══ Skipped tests (27) ══════════════════════════════════════════════════════════ • Eunomia [2.0.0] bug (8): 'test-CDMInterfaceDBC.R:6:3', 'test-CDMInterfaceDBC.R:24:3', 'test-CDMInterfaceDBC.R:53:3', 'test-CDMInterfaceDBC.R:80:3', 'test-CDMInterfaceDBC.R:117:3', 'test-computePathways.R:8:3', 'test-computePathways.R:53:3', 'test-multipleCohortTables.R:68:3' • On CRAN (12): 'test-CDMInterface.R:7:3', 'test-export.R:314:3', 'test-export.R:381:3', 'test-export.R:428:3', 'test-export.R:470:3', 'test-export.R:514:3', 'test-export.R:589:3', 'test-export.R:657:3', 'test-export.R:685:3', 'test-pathwaysLogical.R:225:3', 'test-pathwaysMultipleTargetsLogical.R:19:3', 'test-pathwaysMultipleTargetsLogical.R:216:3' • On Linux (7): 'test-computePathways.R:720:3', 'test-executeTreatmentPatterns.R:10:3', 'test-export.R:30:3', 'test-export.R:99:3', 'test-export.R:149:3', 'test-export.R:193:3', 'test-export.R:237:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-CDMInterfaceCDMC.R:8:3'): (code run outside of `test_that()`) ── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-CDMInterfaceCDMC.R:8:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:32:3'): computePathways CDMConnector ───────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:32:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:78:3'): includeTreatments ──────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:78:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:122:3'): indexDateOffset ───────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:122:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:177:3'): minEraDuration ────────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:177:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:192:3'): splitEventCohorts ─────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:192:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:230:3'): splitTime ─────────────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:230:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:245:3'): eraCollapseSize ───────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:245:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:277:3'): combinationWindow ─────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:277:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:294:3'): minPostCombinationDuration: 30 ────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-computePathways.R:294:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:403:3'): filterTreatments ──────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:403:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:555:3'): FRFS combination ──────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-computePathways.R:555:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:608:3'): LRFS combination ──────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-computePathways.R:608:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:662:3'): No target records ─────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. ├─base::suppressWarnings(generateCohortTableCDMC()) at test-computePathways.R:662:3 2. │ └─base::withCallingHandlers(...) 3. └─TreatmentPatterns:::generateCohortTableCDMC() 4. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 5. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 6. └─duckdb (local) .local(drv, ...) 7. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:682:3'): Empty cohort table ────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. ├─base::suppressWarnings(generateCohortTableCDMC()) at test-computePathways.R:682:3 2. │ └─base::withCallingHandlers(...) 3. └─TreatmentPatterns:::generateCohortTableCDMC() 4. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 5. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 6. └─duckdb (local) .local(drv, ...) 7. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:704:3'): No target defined ─────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. ├─base::suppressWarnings(generateCohortTableCDMC()) at test-computePathways.R:704:3 2. │ └─base::withCallingHandlers(...) 3. └─TreatmentPatterns:::generateCohortTableCDMC() 4. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 5. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 6. └─duckdb (local) .local(drv, ...) 7. └─duckdb:::path_normalize(dbdir) ── Error ('test-executeTreatmentPatterns.R:28:3'): CDMConnector ──────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-executeTreatmentPatterns.R:28:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-multipleCohortTables.R:7:3'): multiple cohort_tables ─────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-multipleCohortTables.R:7:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:7:3'): A ───────────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:7:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:49:3'): A-B ────────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:49:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:93:3'): A-B-C ──────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:93:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:137:3'): A-B+C ─────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:137:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:181:3'): A+B-C ─────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:181:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:269:3'): A-B-A-B ───────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:269:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:314:3'): A-B-A ─────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:314:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:358:3'): A-B-B, collapse to A-B ────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:358:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:402:3'): A-B-B ─────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:402:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:446:3'): A+B-A ─────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:446:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:490:3'): A-A-B ─────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:490:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:534:3'): A-A-B, collapse to A-B ────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:534:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:578:3'): A+B-A+B, collapse to A+B ──────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:578:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:623:3'): A+B-A+B ───────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:623:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:668:3'): A-A+B-B ───────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:668:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:711:3'): A-A-C-A+B+C-C ─────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:711:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:755:3'): A-A+B+C-A+C-C ─────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:755:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:799:3'): A-A+C-C-B+C-C ─────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:799:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:844:3'): start event == start target ───────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:844:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:886:3'): end event == end target ───────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:886:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:928:3'): start-end event == start-end target ── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:928:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:970:3'): start event < start target ────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:970:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:1012:3'): start event < start target, periodPrior = -60 ── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1012:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:1054:3'): start event > end target ─────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1054:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:1097:3'): collapse A-B-B-B to A-A+B-B ──────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1097:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:1143:3'): collapse A-B-B-B to A-B ──────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1143:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:1187:3'): collapse A-A-B-B to A-B ──────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1187:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:1231:3'): collapse A-A-B-B to A-B 2 ────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1231:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:1275:3'): collapse A-A-B-B to A+B 2 ────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1275:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysMultipleTargetsLogical.R:311:3'): Events outside target ── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysMultipleTargetsLogical.R:311:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-TreatmentPatternsResults.R:3:3'): Method: new(data.frame) ────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. ├─base::suppressWarnings(generateCohortTableCDMC()) at test-TreatmentPatternsResults.R:3:3 2. │ └─base::withCallingHandlers(...) 3. └─TreatmentPatterns:::generateCohortTableCDMC() 4. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 5. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 6. └─duckdb (local) .local(drv, ...) 7. └─duckdb:::path_normalize(dbdir) [ FAIL 49 | WARN 0 | SKIP 27 | PASS 89 ] Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 3.0.0
Check: tests
Result: ERROR Running ‘testthat.R’ [96s/180s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(TreatmentPatterns) > > test_check("TreatmentPatterns") Starting 2 test processes [ FAIL 49 | WARN 0 | SKIP 27 | PASS 89 ] ══ Skipped tests (27) ══════════════════════════════════════════════════════════ • Eunomia [2.0.0] bug (8): 'test-CDMInterfaceDBC.R:6:3', 'test-CDMInterfaceDBC.R:24:3', 'test-CDMInterfaceDBC.R:53:3', 'test-CDMInterfaceDBC.R:80:3', 'test-CDMInterfaceDBC.R:117:3', 'test-computePathways.R:8:3', 'test-computePathways.R:53:3', 'test-multipleCohortTables.R:68:3' • On CRAN (12): 'test-CDMInterface.R:7:3', 'test-export.R:314:3', 'test-export.R:381:3', 'test-export.R:428:3', 'test-export.R:470:3', 'test-export.R:514:3', 'test-export.R:589:3', 'test-export.R:657:3', 'test-export.R:685:3', 'test-pathwaysLogical.R:225:3', 'test-pathwaysMultipleTargetsLogical.R:19:3', 'test-pathwaysMultipleTargetsLogical.R:216:3' • On Linux (7): 'test-computePathways.R:720:3', 'test-executeTreatmentPatterns.R:10:3', 'test-export.R:30:3', 'test-export.R:99:3', 'test-export.R:149:3', 'test-export.R:193:3', 'test-export.R:237:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-CDMInterfaceCDMC.R:8:3'): (code run outside of `test_that()`) ── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-CDMInterfaceCDMC.R:8:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:32:3'): computePathways CDMConnector ───────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:32:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:78:3'): includeTreatments ──────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:78:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:122:3'): indexDateOffset ───────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:122:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:177:3'): minEraDuration ────────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:177:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:192:3'): splitEventCohorts ─────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:192:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:230:3'): splitTime ─────────────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:230:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:245:3'): eraCollapseSize ───────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:245:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:277:3'): combinationWindow ─────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:277:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:294:3'): minPostCombinationDuration: 30 ────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-computePathways.R:294:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:403:3'): filterTreatments ──────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:403:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:555:3'): FRFS combination ──────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-computePathways.R:555:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:608:3'): LRFS combination ──────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-computePathways.R:608:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:662:3'): No target records ─────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. ├─base::suppressWarnings(generateCohortTableCDMC()) at test-computePathways.R:662:3 2. │ └─base::withCallingHandlers(...) 3. └─TreatmentPatterns:::generateCohortTableCDMC() 4. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 5. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 6. └─duckdb (local) .local(drv, ...) 7. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:682:3'): Empty cohort table ────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. ├─base::suppressWarnings(generateCohortTableCDMC()) at test-computePathways.R:682:3 2. │ └─base::withCallingHandlers(...) 3. └─TreatmentPatterns:::generateCohortTableCDMC() 4. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 5. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 6. └─duckdb (local) .local(drv, ...) 7. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:704:3'): No target defined ─────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. ├─base::suppressWarnings(generateCohortTableCDMC()) at test-computePathways.R:704:3 2. │ └─base::withCallingHandlers(...) 3. └─TreatmentPatterns:::generateCohortTableCDMC() 4. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 5. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 6. └─duckdb (local) .local(drv, ...) 7. └─duckdb:::path_normalize(dbdir) ── Error ('test-executeTreatmentPatterns.R:28:3'): CDMConnector ──────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-executeTreatmentPatterns.R:28:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-multipleCohortTables.R:7:3'): multiple cohort_tables ─────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-multipleCohortTables.R:7:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:7:3'): A ───────────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:7:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:49:3'): A-B ────────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:49:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:93:3'): A-B-C ──────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:93:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:137:3'): A-B+C ─────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:137:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:181:3'): A+B-C ─────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:181:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:269:3'): A-B-A-B ───────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:269:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:314:3'): A-B-A ─────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:314:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:358:3'): A-B-B, collapse to A-B ────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:358:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:402:3'): A-B-B ─────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:402:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:446:3'): A+B-A ─────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:446:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:490:3'): A-A-B ─────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:490:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:534:3'): A-A-B, collapse to A-B ────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:534:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:578:3'): A+B-A+B, collapse to A+B ──────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:578:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:623:3'): A+B-A+B ───────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:623:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:668:3'): A-A+B-B ───────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:668:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:711:3'): A-A-C-A+B+C-C ─────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:711:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:755:3'): A-A+B+C-A+C-C ─────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:755:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:799:3'): A-A+C-C-B+C-C ─────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:799:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:844:3'): start event == start target ───────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:844:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:886:3'): end event == end target ───────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:886:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:928:3'): start-end event == start-end target ── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:928:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:970:3'): start event < start target ────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:970:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:1012:3'): start event < start target, periodPrior = -60 ── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1012:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:1054:3'): start event > end target ─────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1054:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:1097:3'): collapse A-B-B-B to A-A+B-B ──────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1097:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:1143:3'): collapse A-B-B-B to A-B ──────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1143:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:1187:3'): collapse A-A-B-B to A-B ──────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1187:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:1231:3'): collapse A-A-B-B to A-B 2 ────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1231:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:1275:3'): collapse A-A-B-B to A+B 2 ────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1275:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysMultipleTargetsLogical.R:311:3'): Events outside target ── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysMultipleTargetsLogical.R:311:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-TreatmentPatternsResults.R:3:3'): Method: new(data.frame) ────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. ├─base::suppressWarnings(generateCohortTableCDMC()) at test-TreatmentPatternsResults.R:3:3 2. │ └─base::withCallingHandlers(...) 3. └─TreatmentPatterns:::generateCohortTableCDMC() 4. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 5. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 6. └─duckdb (local) .local(drv, ...) 7. └─duckdb:::path_normalize(dbdir) [ FAIL 49 | WARN 0 | SKIP 27 | PASS 89 ] Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-fedora-clang

Version: 3.0.0
Check: tests
Result: ERROR Running ‘testthat.R’ [94s/157s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(TreatmentPatterns) > > test_check("TreatmentPatterns") Starting 2 test processes [ FAIL 49 | WARN 0 | SKIP 27 | PASS 89 ] ══ Skipped tests (27) ══════════════════════════════════════════════════════════ • Eunomia [2.0.0] bug (8): 'test-CDMInterfaceDBC.R:6:3', 'test-CDMInterfaceDBC.R:24:3', 'test-CDMInterfaceDBC.R:53:3', 'test-CDMInterfaceDBC.R:80:3', 'test-CDMInterfaceDBC.R:117:3', 'test-computePathways.R:8:3', 'test-computePathways.R:53:3', 'test-multipleCohortTables.R:68:3' • On CRAN (12): 'test-CDMInterface.R:7:3', 'test-export.R:314:3', 'test-export.R:381:3', 'test-export.R:428:3', 'test-export.R:470:3', 'test-export.R:514:3', 'test-export.R:589:3', 'test-export.R:657:3', 'test-export.R:685:3', 'test-pathwaysLogical.R:225:3', 'test-pathwaysMultipleTargetsLogical.R:19:3', 'test-pathwaysMultipleTargetsLogical.R:216:3' • On Linux (7): 'test-computePathways.R:720:3', 'test-executeTreatmentPatterns.R:10:3', 'test-export.R:30:3', 'test-export.R:99:3', 'test-export.R:149:3', 'test-export.R:193:3', 'test-export.R:237:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-CDMInterfaceCDMC.R:8:3'): (code run outside of `test_that()`) ── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-CDMInterfaceCDMC.R:8:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:32:3'): computePathways CDMConnector ───────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:32:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:78:3'): includeTreatments ──────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:78:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:122:3'): indexDateOffset ───────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:122:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:177:3'): minEraDuration ────────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:177:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:192:3'): splitEventCohorts ─────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:192:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:230:3'): splitTime ─────────────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:230:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:245:3'): eraCollapseSize ───────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:245:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:277:3'): combinationWindow ─────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:277:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:294:3'): minPostCombinationDuration: 30 ────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-computePathways.R:294:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:403:3'): filterTreatments ──────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:403:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:555:3'): FRFS combination ──────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-computePathways.R:555:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:608:3'): LRFS combination ──────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-computePathways.R:608:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:662:3'): No target records ─────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. ├─base::suppressWarnings(generateCohortTableCDMC()) at test-computePathways.R:662:3 2. │ └─base::withCallingHandlers(...) 3. └─TreatmentPatterns:::generateCohortTableCDMC() 4. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 5. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 6. └─duckdb (local) .local(drv, ...) 7. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:682:3'): Empty cohort table ────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. ├─base::suppressWarnings(generateCohortTableCDMC()) at test-computePathways.R:682:3 2. │ └─base::withCallingHandlers(...) 3. └─TreatmentPatterns:::generateCohortTableCDMC() 4. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 5. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 6. └─duckdb (local) .local(drv, ...) 7. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:704:3'): No target defined ─────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. ├─base::suppressWarnings(generateCohortTableCDMC()) at test-computePathways.R:704:3 2. │ └─base::withCallingHandlers(...) 3. └─TreatmentPatterns:::generateCohortTableCDMC() 4. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 5. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 6. └─duckdb (local) .local(drv, ...) 7. └─duckdb:::path_normalize(dbdir) ── Error ('test-executeTreatmentPatterns.R:28:3'): CDMConnector ──────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-executeTreatmentPatterns.R:28:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-multipleCohortTables.R:7:3'): multiple cohort_tables ─────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-multipleCohortTables.R:7:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:7:3'): A ───────────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:7:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:49:3'): A-B ────────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:49:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:93:3'): A-B-C ──────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:93:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:137:3'): A-B+C ─────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:137:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:181:3'): A+B-C ─────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:181:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:269:3'): A-B-A-B ───────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:269:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:314:3'): A-B-A ─────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:314:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:358:3'): A-B-B, collapse to A-B ────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:358:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:402:3'): A-B-B ─────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:402:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:446:3'): A+B-A ─────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:446:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:490:3'): A-A-B ─────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:490:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:534:3'): A-A-B, collapse to A-B ────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:534:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:578:3'): A+B-A+B, collapse to A+B ──────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:578:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:623:3'): A+B-A+B ───────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:623:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:668:3'): A-A+B-B ───────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:668:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:711:3'): A-A-C-A+B+C-C ─────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:711:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:755:3'): A-A+B+C-A+C-C ─────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:755:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:799:3'): A-A+C-C-B+C-C ─────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:799:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:844:3'): start event == start target ───────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:844:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:886:3'): end event == end target ───────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:886:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:928:3'): start-end event == start-end target ── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:928:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:970:3'): start event < start target ────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:970:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:1012:3'): start event < start target, periodPrior = -60 ── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1012:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:1054:3'): start event > end target ─────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1054:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:1097:3'): collapse A-B-B-B to A-A+B-B ──────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1097:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:1143:3'): collapse A-B-B-B to A-B ──────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1143:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:1187:3'): collapse A-A-B-B to A-B ──────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1187:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:1231:3'): collapse A-A-B-B to A-B 2 ────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1231:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:1275:3'): collapse A-A-B-B to A+B 2 ────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1275:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysMultipleTargetsLogical.R:311:3'): Events outside target ── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysMultipleTargetsLogical.R:311:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-TreatmentPatternsResults.R:3:3'): Method: new(data.frame) ────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. ├─base::suppressWarnings(generateCohortTableCDMC()) at test-TreatmentPatternsResults.R:3:3 2. │ └─base::withCallingHandlers(...) 3. └─TreatmentPatterns:::generateCohortTableCDMC() 4. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 5. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 6. └─duckdb (local) .local(drv, ...) 7. └─duckdb:::path_normalize(dbdir) [ FAIL 49 | WARN 0 | SKIP 27 | PASS 89 ] Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 3.0.0
Check: tests
Result: ERROR Running 'testthat.R' [61s] Running the tests in 'tests/testthat.R' failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(TreatmentPatterns) > > test_check("TreatmentPatterns") Starting 2 test processes [ FAIL 50 | WARN 0 | SKIP 25 | PASS 90 ] ══ Skipped tests (25) ══════════════════════════════════════════════════════════ • Eunomia [2.0.0] bug (8): 'test-CDMInterfaceDBC.R:6:3', 'test-CDMInterfaceDBC.R:24:3', 'test-CDMInterfaceDBC.R:53:3', 'test-CDMInterfaceDBC.R:80:3', 'test-CDMInterfaceDBC.R:117:3', 'test-computePathways.R:8:3', 'test-computePathways.R:53:3', 'test-multipleCohortTables.R:68:3' • On CRAN (17): 'test-CDMInterface.R:7:3', 'test-export.R:31:3', 'test-export.R:100:3', 'test-export.R:150:3', 'test-export.R:194:3', 'test-export.R:238:3', 'test-export.R:314:3', 'test-export.R:381:3', 'test-export.R:428:3', 'test-export.R:470:3', 'test-export.R:514:3', 'test-export.R:589:3', 'test-export.R:657:3', 'test-export.R:685:3', 'test-pathwaysLogical.R:225:3', 'test-pathwaysMultipleTargetsLogical.R:19:3', 'test-pathwaysMultipleTargetsLogical.R:216:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-CDMInterfaceCDMC.R:8:3'): (code run outside of `test_that()`) ── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-CDMInterfaceCDMC.R:8:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:32:3'): computePathways CDMConnector ───────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:32:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at D:\RCompile\CRANpkg\local\4.5\TreatmentPatterns.Rcheck\tests\testthat\helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:78:3'): includeTreatments ──────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:78:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at D:\RCompile\CRANpkg\local\4.5\TreatmentPatterns.Rcheck\tests\testthat\helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:122:3'): indexDateOffset ───────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:122:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at D:\RCompile\CRANpkg\local\4.5\TreatmentPatterns.Rcheck\tests\testthat\helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:177:3'): minEraDuration ────────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:177:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at D:\RCompile\CRANpkg\local\4.5\TreatmentPatterns.Rcheck\tests\testthat\helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:192:3'): splitEventCohorts ─────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:192:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at D:\RCompile\CRANpkg\local\4.5\TreatmentPatterns.Rcheck\tests\testthat\helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:230:3'): splitTime ─────────────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:230:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at D:\RCompile\CRANpkg\local\4.5\TreatmentPatterns.Rcheck\tests\testthat\helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:245:3'): eraCollapseSize ───────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:245:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at D:\RCompile\CRANpkg\local\4.5\TreatmentPatterns.Rcheck\tests\testthat\helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:277:3'): combinationWindow ─────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:277:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at D:\RCompile\CRANpkg\local\4.5\TreatmentPatterns.Rcheck\tests\testthat\helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:294:3'): minPostCombinationDuration: 30 ────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-computePathways.R:294:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:403:3'): filterTreatments ──────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:403:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at D:\RCompile\CRANpkg\local\4.5\TreatmentPatterns.Rcheck\tests\testthat\helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:555:3'): FRFS combination ──────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-computePathways.R:555:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:608:3'): LRFS combination ──────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-computePathways.R:608:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:662:3'): No target records ─────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. ├─base::suppressWarnings(generateCohortTableCDMC()) at test-computePathways.R:662:3 2. │ └─base::withCallingHandlers(...) 3. └─TreatmentPatterns:::generateCohortTableCDMC() 4. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at D:\RCompile\CRANpkg\local\4.5\TreatmentPatterns.Rcheck\tests\testthat\helper-generateCohortTableCDMC.R:5:5 5. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 6. └─duckdb (local) .local(drv, ...) 7. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:682:3'): Empty cohort table ────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. ├─base::suppressWarnings(generateCohortTableCDMC()) at test-computePathways.R:682:3 2. │ └─base::withCallingHandlers(...) 3. └─TreatmentPatterns:::generateCohortTableCDMC() 4. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at D:\RCompile\CRANpkg\local\4.5\TreatmentPatterns.Rcheck\tests\testthat\helper-generateCohortTableCDMC.R:5:5 5. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 6. └─duckdb (local) .local(drv, ...) 7. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:704:3'): No target defined ─────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. ├─base::suppressWarnings(generateCohortTableCDMC()) at test-computePathways.R:704:3 2. │ └─base::withCallingHandlers(...) 3. └─TreatmentPatterns:::generateCohortTableCDMC() 4. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at D:\RCompile\CRANpkg\local\4.5\TreatmentPatterns.Rcheck\tests\testthat\helper-generateCohortTableCDMC.R:5:5 5. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 6. └─duckdb (local) .local(drv, ...) 7. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:724:3'): Attrition ─────────────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. ├─base::suppressWarnings(generateCohortTableCDMC()) at test-computePathways.R:724:3 2. │ └─base::withCallingHandlers(...) 3. └─TreatmentPatterns:::generateCohortTableCDMC() 4. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at D:\RCompile\CRANpkg\local\4.5\TreatmentPatterns.Rcheck\tests\testthat\helper-generateCohortTableCDMC.R:5:5 5. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 6. └─duckdb (local) .local(drv, ...) 7. └─duckdb:::path_normalize(dbdir) ── Error ('test-TreatmentPatternsResults.R:3:3'): Method: new(data.frame) ────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. ├─base::suppressWarnings(generateCohortTableCDMC()) at test-TreatmentPatternsResults.R:3:3 2. │ └─base::withCallingHandlers(...) 3. └─TreatmentPatterns:::generateCohortTableCDMC() 4. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at D:\RCompile\CRANpkg\local\4.5\TreatmentPatterns.Rcheck\tests\testthat\helper-generateCohortTableCDMC.R:5:5 5. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 6. └─duckdb (local) .local(drv, ...) 7. └─duckdb:::path_normalize(dbdir) ── Error ('test-multipleCohortTables.R:7:3'): multiple cohort_tables ─────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-multipleCohortTables.R:7:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:7:3'): A ───────────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:7:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:49:3'): A-B ────────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:49:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:93:3'): A-B-C ──────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:93:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:137:3'): A-B+C ─────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:137:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:181:3'): A+B-C ─────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:181:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:269:3'): A-B-A-B ───────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:269:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:314:3'): A-B-A ─────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:314:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:358:3'): A-B-B, collapse to A-B ────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:358:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:402:3'): A-B-B ─────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:402:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:446:3'): A+B-A ─────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:446:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:490:3'): A-A-B ─────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:490:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:534:3'): A-A-B, collapse to A-B ────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:534:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:578:3'): A+B-A+B, collapse to A+B ──────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:578:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:623:3'): A+B-A+B ───────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:623:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:668:3'): A-A+B-B ───────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:668:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:711:3'): A-A-C-A+B+C-C ─────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:711:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:755:3'): A-A+B+C-A+C-C ─────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:755:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:799:3'): A-A+C-C-B+C-C ─────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:799:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:844:3'): start event == start target ───────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:844:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:886:3'): end event == end target ───────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:886:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:928:3'): start-end event == start-end target ── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:928:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:970:3'): start event < start target ────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:970:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:1012:3'): start event < start target, periodPrior = -60 ── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1012:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:1054:3'): start event > end target ─────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1054:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:1097:3'): collapse A-B-B-B to A-A+B-B ──────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1097:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:1143:3'): collapse A-B-B-B to A-B ──────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1143:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:1187:3'): collapse A-A-B-B to A-B ──────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1187:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:1231:3'): collapse A-A-B-B to A-B 2 ────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1231:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:1275:3'): collapse A-A-B-B to A+B 2 ────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1275:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysMultipleTargetsLogical.R:311:3'): Events outside target ── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysMultipleTargetsLogical.R:311:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-executeTreatmentPatterns.R:28:3'): CDMConnector ──────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-executeTreatmentPatterns.R:28:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at D:\RCompile\CRANpkg\local\4.5\TreatmentPatterns.Rcheck\tests\testthat\helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) [ FAIL 50 | WARN 0 | SKIP 25 | PASS 90 ] Error: Test failures Execution halted Flavor: r-devel-windows-x86_64

Version: 3.0.0
Check: tests
Result: ERROR Running ‘testthat.R’ [55s/41s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(TreatmentPatterns) > > test_check("TreatmentPatterns") Starting 2 test processes [ FAIL 49 | WARN 0 | SKIP 27 | PASS 89 ] ══ Skipped tests (27) ══════════════════════════════════════════════════════════ • Eunomia [2.0.0] bug (8): 'test-CDMInterfaceDBC.R:6:3', 'test-CDMInterfaceDBC.R:24:3', 'test-CDMInterfaceDBC.R:53:3', 'test-CDMInterfaceDBC.R:80:3', 'test-CDMInterfaceDBC.R:117:3', 'test-computePathways.R:8:3', 'test-computePathways.R:53:3', 'test-multipleCohortTables.R:68:3' • On CRAN (12): 'test-CDMInterface.R:7:3', 'test-export.R:314:3', 'test-export.R:381:3', 'test-export.R:428:3', 'test-export.R:470:3', 'test-export.R:514:3', 'test-export.R:589:3', 'test-export.R:657:3', 'test-export.R:685:3', 'test-pathwaysLogical.R:225:3', 'test-pathwaysMultipleTargetsLogical.R:19:3', 'test-pathwaysMultipleTargetsLogical.R:216:3' • On Linux (7): 'test-computePathways.R:720:3', 'test-executeTreatmentPatterns.R:10:3', 'test-export.R:30:3', 'test-export.R:99:3', 'test-export.R:149:3', 'test-export.R:193:3', 'test-export.R:237:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-CDMInterfaceCDMC.R:8:3'): (code run outside of `test_that()`) ── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-CDMInterfaceCDMC.R:8:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:32:3'): computePathways CDMConnector ───────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:32:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:78:3'): includeTreatments ──────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:78:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:122:3'): indexDateOffset ───────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:122:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:177:3'): minEraDuration ────────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:177:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:192:3'): splitEventCohorts ─────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:192:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:230:3'): splitTime ─────────────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:230:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:245:3'): eraCollapseSize ───────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:245:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:277:3'): combinationWindow ─────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:277:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:294:3'): minPostCombinationDuration: 30 ────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-computePathways.R:294:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:403:3'): filterTreatments ──────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:403:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:555:3'): FRFS combination ──────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-computePathways.R:555:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:608:3'): LRFS combination ──────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-computePathways.R:608:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:662:3'): No target records ─────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. ├─base::suppressWarnings(generateCohortTableCDMC()) at test-computePathways.R:662:3 2. │ └─base::withCallingHandlers(...) 3. └─TreatmentPatterns:::generateCohortTableCDMC() 4. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 5. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 6. └─duckdb (local) .local(drv, ...) 7. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:682:3'): Empty cohort table ────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. ├─base::suppressWarnings(generateCohortTableCDMC()) at test-computePathways.R:682:3 2. │ └─base::withCallingHandlers(...) 3. └─TreatmentPatterns:::generateCohortTableCDMC() 4. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 5. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 6. └─duckdb (local) .local(drv, ...) 7. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:704:3'): No target defined ─────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. ├─base::suppressWarnings(generateCohortTableCDMC()) at test-computePathways.R:704:3 2. │ └─base::withCallingHandlers(...) 3. └─TreatmentPatterns:::generateCohortTableCDMC() 4. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 5. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 6. └─duckdb (local) .local(drv, ...) 7. └─duckdb:::path_normalize(dbdir) ── Error ('test-executeTreatmentPatterns.R:28:3'): CDMConnector ──────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-executeTreatmentPatterns.R:28:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-multipleCohortTables.R:7:3'): multiple cohort_tables ─────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-multipleCohortTables.R:7:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:7:3'): A ───────────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:7:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:49:3'): A-B ────────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:49:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:93:3'): A-B-C ──────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:93:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:137:3'): A-B+C ─────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:137:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:181:3'): A+B-C ─────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:181:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:269:3'): A-B-A-B ───────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:269:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:314:3'): A-B-A ─────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:314:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:358:3'): A-B-B, collapse to A-B ────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:358:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:402:3'): A-B-B ─────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:402:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:446:3'): A+B-A ─────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:446:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:490:3'): A-A-B ─────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:490:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:534:3'): A-A-B, collapse to A-B ────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:534:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:578:3'): A+B-A+B, collapse to A+B ──────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:578:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:623:3'): A+B-A+B ───────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:623:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:668:3'): A-A+B-B ───────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:668:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:711:3'): A-A-C-A+B+C-C ─────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:711:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:755:3'): A-A+B+C-A+C-C ─────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:755:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:799:3'): A-A+C-C-B+C-C ─────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:799:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:844:3'): start event == start target ───────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:844:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:886:3'): end event == end target ───────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:886:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:928:3'): start-end event == start-end target ── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:928:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:970:3'): start event < start target ────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:970:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:1012:3'): start event < start target, periodPrior = -60 ── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1012:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:1054:3'): start event > end target ─────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1054:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:1097:3'): collapse A-B-B-B to A-A+B-B ──────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1097:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:1143:3'): collapse A-B-B-B to A-B ──────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1143:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:1187:3'): collapse A-A-B-B to A-B ──────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1187:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:1231:3'): collapse A-A-B-B to A-B 2 ────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1231:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:1275:3'): collapse A-A-B-B to A+B 2 ────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1275:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysMultipleTargetsLogical.R:311:3'): Events outside target ── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysMultipleTargetsLogical.R:311:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-TreatmentPatternsResults.R:3:3'): Method: new(data.frame) ────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. ├─base::suppressWarnings(generateCohortTableCDMC()) at test-TreatmentPatternsResults.R:3:3 2. │ └─base::withCallingHandlers(...) 3. └─TreatmentPatterns:::generateCohortTableCDMC() 4. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 5. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 6. └─duckdb (local) .local(drv, ...) 7. └─duckdb:::path_normalize(dbdir) [ FAIL 49 | WARN 0 | SKIP 27 | PASS 89 ] Error: Test failures Execution halted Flavor: r-patched-linux-x86_64

Version: 3.0.0
Check: tests
Result: ERROR Running ‘testthat.R’ [56s/42s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(TreatmentPatterns) > > test_check("TreatmentPatterns") Starting 2 test processes [ FAIL 49 | WARN 0 | SKIP 27 | PASS 89 ] ══ Skipped tests (27) ══════════════════════════════════════════════════════════ • Eunomia [2.0.0] bug (8): 'test-CDMInterfaceDBC.R:6:3', 'test-CDMInterfaceDBC.R:24:3', 'test-CDMInterfaceDBC.R:53:3', 'test-CDMInterfaceDBC.R:80:3', 'test-CDMInterfaceDBC.R:117:3', 'test-computePathways.R:8:3', 'test-computePathways.R:53:3', 'test-multipleCohortTables.R:68:3' • On CRAN (12): 'test-CDMInterface.R:7:3', 'test-export.R:314:3', 'test-export.R:381:3', 'test-export.R:428:3', 'test-export.R:470:3', 'test-export.R:514:3', 'test-export.R:589:3', 'test-export.R:657:3', 'test-export.R:685:3', 'test-pathwaysLogical.R:225:3', 'test-pathwaysMultipleTargetsLogical.R:19:3', 'test-pathwaysMultipleTargetsLogical.R:216:3' • On Linux (7): 'test-computePathways.R:720:3', 'test-executeTreatmentPatterns.R:10:3', 'test-export.R:30:3', 'test-export.R:99:3', 'test-export.R:149:3', 'test-export.R:193:3', 'test-export.R:237:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-CDMInterfaceCDMC.R:8:3'): (code run outside of `test_that()`) ── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-CDMInterfaceCDMC.R:8:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:32:3'): computePathways CDMConnector ───────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:32:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:78:3'): includeTreatments ──────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:78:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:122:3'): indexDateOffset ───────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:122:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:177:3'): minEraDuration ────────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:177:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:192:3'): splitEventCohorts ─────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:192:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:230:3'): splitTime ─────────────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:230:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:245:3'): eraCollapseSize ───────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:245:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:277:3'): combinationWindow ─────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:277:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:294:3'): minPostCombinationDuration: 30 ────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-computePathways.R:294:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:403:3'): filterTreatments ──────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:403:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:555:3'): FRFS combination ──────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-computePathways.R:555:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:608:3'): LRFS combination ──────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-computePathways.R:608:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:662:3'): No target records ─────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. ├─base::suppressWarnings(generateCohortTableCDMC()) at test-computePathways.R:662:3 2. │ └─base::withCallingHandlers(...) 3. └─TreatmentPatterns:::generateCohortTableCDMC() 4. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 5. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 6. └─duckdb (local) .local(drv, ...) 7. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:682:3'): Empty cohort table ────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. ├─base::suppressWarnings(generateCohortTableCDMC()) at test-computePathways.R:682:3 2. │ └─base::withCallingHandlers(...) 3. └─TreatmentPatterns:::generateCohortTableCDMC() 4. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 5. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 6. └─duckdb (local) .local(drv, ...) 7. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:704:3'): No target defined ─────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. ├─base::suppressWarnings(generateCohortTableCDMC()) at test-computePathways.R:704:3 2. │ └─base::withCallingHandlers(...) 3. └─TreatmentPatterns:::generateCohortTableCDMC() 4. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 5. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 6. └─duckdb (local) .local(drv, ...) 7. └─duckdb:::path_normalize(dbdir) ── Error ('test-executeTreatmentPatterns.R:28:3'): CDMConnector ──────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-executeTreatmentPatterns.R:28:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-multipleCohortTables.R:7:3'): multiple cohort_tables ─────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-multipleCohortTables.R:7:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:7:3'): A ───────────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:7:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:49:3'): A-B ────────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:49:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:93:3'): A-B-C ──────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:93:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:137:3'): A-B+C ─────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:137:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:181:3'): A+B-C ─────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:181:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:269:3'): A-B-A-B ───────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:269:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:314:3'): A-B-A ─────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:314:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:358:3'): A-B-B, collapse to A-B ────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:358:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:402:3'): A-B-B ─────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:402:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:446:3'): A+B-A ─────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:446:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:490:3'): A-A-B ─────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:490:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:534:3'): A-A-B, collapse to A-B ────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:534:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:578:3'): A+B-A+B, collapse to A+B ──────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:578:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:623:3'): A+B-A+B ───────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:623:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:668:3'): A-A+B-B ───────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:668:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:711:3'): A-A-C-A+B+C-C ─────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:711:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:755:3'): A-A+B+C-A+C-C ─────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:755:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:799:3'): A-A+C-C-B+C-C ─────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:799:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:844:3'): start event == start target ───────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:844:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:886:3'): end event == end target ───────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:886:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:928:3'): start-end event == start-end target ── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:928:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:970:3'): start event < start target ────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:970:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:1012:3'): start event < start target, periodPrior = -60 ── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1012:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:1054:3'): start event > end target ─────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1054:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:1097:3'): collapse A-B-B-B to A-A+B-B ──────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1097:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:1143:3'): collapse A-B-B-B to A-B ──────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1143:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:1187:3'): collapse A-A-B-B to A-B ──────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1187:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:1231:3'): collapse A-A-B-B to A-B 2 ────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1231:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:1275:3'): collapse A-A-B-B to A+B 2 ────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1275:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysMultipleTargetsLogical.R:311:3'): Events outside target ── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysMultipleTargetsLogical.R:311:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-TreatmentPatternsResults.R:3:3'): Method: new(data.frame) ────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. ├─base::suppressWarnings(generateCohortTableCDMC()) at test-TreatmentPatternsResults.R:3:3 2. │ └─base::withCallingHandlers(...) 3. └─TreatmentPatterns:::generateCohortTableCDMC() 4. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5 5. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 6. └─duckdb (local) .local(drv, ...) 7. └─duckdb:::path_normalize(dbdir) [ FAIL 49 | WARN 0 | SKIP 27 | PASS 89 ] Error: Test failures Execution halted Flavor: r-release-linux-x86_64

Version: 3.0.0
Check: tests
Result: ERROR Running 'testthat.R' [64s] Running the tests in 'tests/testthat.R' failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(TreatmentPatterns) > > test_check("TreatmentPatterns") Starting 2 test processes [ FAIL 50 | WARN 0 | SKIP 25 | PASS 90 ] ══ Skipped tests (25) ══════════════════════════════════════════════════════════ • Eunomia [2.0.0] bug (8): 'test-CDMInterfaceDBC.R:6:3', 'test-CDMInterfaceDBC.R:24:3', 'test-CDMInterfaceDBC.R:53:3', 'test-CDMInterfaceDBC.R:80:3', 'test-CDMInterfaceDBC.R:117:3', 'test-computePathways.R:8:3', 'test-computePathways.R:53:3', 'test-multipleCohortTables.R:68:3' • On CRAN (17): 'test-CDMInterface.R:7:3', 'test-export.R:31:3', 'test-export.R:100:3', 'test-export.R:150:3', 'test-export.R:194:3', 'test-export.R:238:3', 'test-export.R:314:3', 'test-export.R:381:3', 'test-export.R:428:3', 'test-export.R:470:3', 'test-export.R:514:3', 'test-export.R:589:3', 'test-export.R:657:3', 'test-export.R:685:3', 'test-pathwaysLogical.R:225:3', 'test-pathwaysMultipleTargetsLogical.R:19:3', 'test-pathwaysMultipleTargetsLogical.R:216:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-CDMInterfaceCDMC.R:8:3'): (code run outside of `test_that()`) ── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-CDMInterfaceCDMC.R:8:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:32:3'): computePathways CDMConnector ───────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:32:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at D:\RCompile\CRANpkg\local\4.4\TreatmentPatterns.Rcheck\tests\testthat\helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:78:3'): includeTreatments ──────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:78:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at D:\RCompile\CRANpkg\local\4.4\TreatmentPatterns.Rcheck\tests\testthat\helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:122:3'): indexDateOffset ───────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:122:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at D:\RCompile\CRANpkg\local\4.4\TreatmentPatterns.Rcheck\tests\testthat\helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:177:3'): minEraDuration ────────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:177:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at D:\RCompile\CRANpkg\local\4.4\TreatmentPatterns.Rcheck\tests\testthat\helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:192:3'): splitEventCohorts ─────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:192:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at D:\RCompile\CRANpkg\local\4.4\TreatmentPatterns.Rcheck\tests\testthat\helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:230:3'): splitTime ─────────────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:230:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at D:\RCompile\CRANpkg\local\4.4\TreatmentPatterns.Rcheck\tests\testthat\helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:245:3'): eraCollapseSize ───────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:245:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at D:\RCompile\CRANpkg\local\4.4\TreatmentPatterns.Rcheck\tests\testthat\helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:277:3'): combinationWindow ─────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:277:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at D:\RCompile\CRANpkg\local\4.4\TreatmentPatterns.Rcheck\tests\testthat\helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:294:3'): minPostCombinationDuration: 30 ────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-computePathways.R:294:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:403:3'): filterTreatments ──────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:403:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at D:\RCompile\CRANpkg\local\4.4\TreatmentPatterns.Rcheck\tests\testthat\helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:555:3'): FRFS combination ──────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-computePathways.R:555:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:608:3'): LRFS combination ──────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-computePathways.R:608:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:662:3'): No target records ─────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. ├─base::suppressWarnings(generateCohortTableCDMC()) at test-computePathways.R:662:3 2. │ └─base::withCallingHandlers(...) 3. └─TreatmentPatterns:::generateCohortTableCDMC() 4. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at D:\RCompile\CRANpkg\local\4.4\TreatmentPatterns.Rcheck\tests\testthat\helper-generateCohortTableCDMC.R:5:5 5. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 6. └─duckdb (local) .local(drv, ...) 7. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:682:3'): Empty cohort table ────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. ├─base::suppressWarnings(generateCohortTableCDMC()) at test-computePathways.R:682:3 2. │ └─base::withCallingHandlers(...) 3. └─TreatmentPatterns:::generateCohortTableCDMC() 4. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at D:\RCompile\CRANpkg\local\4.4\TreatmentPatterns.Rcheck\tests\testthat\helper-generateCohortTableCDMC.R:5:5 5. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 6. └─duckdb (local) .local(drv, ...) 7. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:704:3'): No target defined ─────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. ├─base::suppressWarnings(generateCohortTableCDMC()) at test-computePathways.R:704:3 2. │ └─base::withCallingHandlers(...) 3. └─TreatmentPatterns:::generateCohortTableCDMC() 4. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at D:\RCompile\CRANpkg\local\4.4\TreatmentPatterns.Rcheck\tests\testthat\helper-generateCohortTableCDMC.R:5:5 5. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 6. └─duckdb (local) .local(drv, ...) 7. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:724:3'): Attrition ─────────────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. ├─base::suppressWarnings(generateCohortTableCDMC()) at test-computePathways.R:724:3 2. │ └─base::withCallingHandlers(...) 3. └─TreatmentPatterns:::generateCohortTableCDMC() 4. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at D:\RCompile\CRANpkg\local\4.4\TreatmentPatterns.Rcheck\tests\testthat\helper-generateCohortTableCDMC.R:5:5 5. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 6. └─duckdb (local) .local(drv, ...) 7. └─duckdb:::path_normalize(dbdir) ── Error ('test-TreatmentPatternsResults.R:3:3'): Method: new(data.frame) ────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. ├─base::suppressWarnings(generateCohortTableCDMC()) at test-TreatmentPatternsResults.R:3:3 2. │ └─base::withCallingHandlers(...) 3. └─TreatmentPatterns:::generateCohortTableCDMC() 4. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at D:\RCompile\CRANpkg\local\4.4\TreatmentPatterns.Rcheck\tests\testthat\helper-generateCohortTableCDMC.R:5:5 5. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 6. └─duckdb (local) .local(drv, ...) 7. └─duckdb:::path_normalize(dbdir) ── Error ('test-multipleCohortTables.R:7:3'): multiple cohort_tables ─────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-multipleCohortTables.R:7:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:7:3'): A ───────────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:7:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:49:3'): A-B ────────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:49:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:93:3'): A-B-C ──────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:93:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:137:3'): A-B+C ─────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:137:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:181:3'): A+B-C ─────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:181:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:269:3'): A-B-A-B ───────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:269:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:314:3'): A-B-A ─────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:314:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:358:3'): A-B-B, collapse to A-B ────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:358:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:402:3'): A-B-B ─────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:402:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:446:3'): A+B-A ─────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:446:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:490:3'): A-A-B ─────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:490:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:534:3'): A-A-B, collapse to A-B ────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:534:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:578:3'): A+B-A+B, collapse to A+B ──────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:578:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:623:3'): A+B-A+B ───────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:623:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:668:3'): A-A+B-B ───────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:668:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:711:3'): A-A-C-A+B+C-C ─────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:711:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:755:3'): A-A+B+C-A+C-C ─────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:755:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:799:3'): A-A+C-C-B+C-C ─────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:799:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:844:3'): start event == start target ───────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:844:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:886:3'): end event == end target ───────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:886:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:928:3'): start-end event == start-end target ── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:928:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:970:3'): start event < start target ────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:970:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:1012:3'): start event < start target, periodPrior = -60 ── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1012:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:1054:3'): start event > end target ─────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1054:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:1097:3'): collapse A-B-B-B to A-A+B-B ──────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1097:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:1143:3'): collapse A-B-B-B to A-B ──────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1143:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:1187:3'): collapse A-A-B-B to A-B ──────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1187:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:1231:3'): collapse A-A-B-B to A-B 2 ────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1231:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:1275:3'): collapse A-A-B-B to A+B 2 ────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1275:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysMultipleTargetsLogical.R:311:3'): Events outside target ── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysMultipleTargetsLogical.R:311:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-executeTreatmentPatterns.R:28:3'): CDMConnector ──────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-executeTreatmentPatterns.R:28:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at D:\RCompile\CRANpkg\local\4.4\TreatmentPatterns.Rcheck\tests\testthat\helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) [ FAIL 50 | WARN 0 | SKIP 25 | PASS 90 ] Error: Test failures Execution halted Flavor: r-release-windows-x86_64

Version: 3.0.0
Check: tests
Result: ERROR Running 'testthat.R' [77s] Running the tests in 'tests/testthat.R' failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(TreatmentPatterns) > > test_check("TreatmentPatterns") Starting 2 test processes [ FAIL 50 | WARN 0 | SKIP 25 | PASS 90 ] ══ Skipped tests (25) ══════════════════════════════════════════════════════════ • Eunomia [2.0.0] bug (8): 'test-CDMInterfaceDBC.R:6:3', 'test-CDMInterfaceDBC.R:24:3', 'test-CDMInterfaceDBC.R:53:3', 'test-CDMInterfaceDBC.R:80:3', 'test-CDMInterfaceDBC.R:117:3', 'test-computePathways.R:8:3', 'test-computePathways.R:53:3', 'test-multipleCohortTables.R:68:3' • On CRAN (17): 'test-CDMInterface.R:7:3', 'test-export.R:31:3', 'test-export.R:100:3', 'test-export.R:150:3', 'test-export.R:194:3', 'test-export.R:238:3', 'test-export.R:314:3', 'test-export.R:381:3', 'test-export.R:428:3', 'test-export.R:470:3', 'test-export.R:514:3', 'test-export.R:589:3', 'test-export.R:657:3', 'test-export.R:685:3', 'test-pathwaysLogical.R:225:3', 'test-pathwaysMultipleTargetsLogical.R:19:3', 'test-pathwaysMultipleTargetsLogical.R:216:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-CDMInterfaceCDMC.R:8:3'): (code run outside of `test_that()`) ── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-CDMInterfaceCDMC.R:8:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:32:3'): computePathways CDMConnector ───────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:32:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at D:\RCompile\CRANpkg\local\4.3\TreatmentPatterns.Rcheck\tests\testthat\helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:78:3'): includeTreatments ──────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:78:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at D:\RCompile\CRANpkg\local\4.3\TreatmentPatterns.Rcheck\tests\testthat\helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:122:3'): indexDateOffset ───────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:122:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at D:\RCompile\CRANpkg\local\4.3\TreatmentPatterns.Rcheck\tests\testthat\helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:177:3'): minEraDuration ────────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:177:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at D:\RCompile\CRANpkg\local\4.3\TreatmentPatterns.Rcheck\tests\testthat\helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:192:3'): splitEventCohorts ─────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:192:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at D:\RCompile\CRANpkg\local\4.3\TreatmentPatterns.Rcheck\tests\testthat\helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:230:3'): splitTime ─────────────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:230:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at D:\RCompile\CRANpkg\local\4.3\TreatmentPatterns.Rcheck\tests\testthat\helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:245:3'): eraCollapseSize ───────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:245:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at D:\RCompile\CRANpkg\local\4.3\TreatmentPatterns.Rcheck\tests\testthat\helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:277:3'): combinationWindow ─────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:277:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at D:\RCompile\CRANpkg\local\4.3\TreatmentPatterns.Rcheck\tests\testthat\helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:294:3'): minPostCombinationDuration: 30 ────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-computePathways.R:294:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:403:3'): filterTreatments ──────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:403:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at D:\RCompile\CRANpkg\local\4.3\TreatmentPatterns.Rcheck\tests\testthat\helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:555:3'): FRFS combination ──────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-computePathways.R:555:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:608:3'): LRFS combination ──────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-computePathways.R:608:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:662:3'): No target records ─────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. ├─base::suppressWarnings(generateCohortTableCDMC()) at test-computePathways.R:662:3 2. │ └─base::withCallingHandlers(...) 3. └─TreatmentPatterns:::generateCohortTableCDMC() 4. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at D:\RCompile\CRANpkg\local\4.3\TreatmentPatterns.Rcheck\tests\testthat\helper-generateCohortTableCDMC.R:5:5 5. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 6. └─duckdb (local) .local(drv, ...) 7. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:682:3'): Empty cohort table ────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. ├─base::suppressWarnings(generateCohortTableCDMC()) at test-computePathways.R:682:3 2. │ └─base::withCallingHandlers(...) 3. └─TreatmentPatterns:::generateCohortTableCDMC() 4. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at D:\RCompile\CRANpkg\local\4.3\TreatmentPatterns.Rcheck\tests\testthat\helper-generateCohortTableCDMC.R:5:5 5. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 6. └─duckdb (local) .local(drv, ...) 7. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:704:3'): No target defined ─────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. ├─base::suppressWarnings(generateCohortTableCDMC()) at test-computePathways.R:704:3 2. │ └─base::withCallingHandlers(...) 3. └─TreatmentPatterns:::generateCohortTableCDMC() 4. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at D:\RCompile\CRANpkg\local\4.3\TreatmentPatterns.Rcheck\tests\testthat\helper-generateCohortTableCDMC.R:5:5 5. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 6. └─duckdb (local) .local(drv, ...) 7. └─duckdb:::path_normalize(dbdir) ── Error ('test-computePathways.R:724:3'): Attrition ─────────────────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. ├─base::suppressWarnings(generateCohortTableCDMC()) at test-computePathways.R:724:3 2. │ └─base::withCallingHandlers(...) 3. └─TreatmentPatterns:::generateCohortTableCDMC() 4. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at D:\RCompile\CRANpkg\local\4.3\TreatmentPatterns.Rcheck\tests\testthat\helper-generateCohortTableCDMC.R:5:5 5. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 6. └─duckdb (local) .local(drv, ...) 7. └─duckdb:::path_normalize(dbdir) ── Error ('test-TreatmentPatternsResults.R:3:3'): Method: new(data.frame) ────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. ├─base::suppressWarnings(generateCohortTableCDMC()) at test-TreatmentPatternsResults.R:3:3 2. │ └─base::withCallingHandlers(...) 3. └─TreatmentPatterns:::generateCohortTableCDMC() 4. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at D:\RCompile\CRANpkg\local\4.3\TreatmentPatterns.Rcheck\tests\testthat\helper-generateCohortTableCDMC.R:5:5 5. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 6. └─duckdb (local) .local(drv, ...) 7. └─duckdb:::path_normalize(dbdir) ── Error ('test-multipleCohortTables.R:7:3'): multiple cohort_tables ─────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-multipleCohortTables.R:7:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:7:3'): A ───────────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:7:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:49:3'): A-B ────────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:49:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:93:3'): A-B-C ──────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:93:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:137:3'): A-B+C ─────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:137:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:181:3'): A+B-C ─────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:181:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:269:3'): A-B-A-B ───────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:269:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:314:3'): A-B-A ─────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:314:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:358:3'): A-B-B, collapse to A-B ────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:358:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:402:3'): A-B-B ─────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:402:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:446:3'): A+B-A ─────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:446:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:490:3'): A-A-B ─────────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:490:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:534:3'): A-A-B, collapse to A-B ────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:534:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:578:3'): A+B-A+B, collapse to A+B ──────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:578:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:623:3'): A+B-A+B ───────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:623:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:668:3'): A-A+B-B ───────────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:668:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:711:3'): A-A-C-A+B+C-C ─────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:711:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:755:3'): A-A+B+C-A+C-C ─────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:755:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:799:3'): A-A+C-C-B+C-C ─────────────────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:799:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:844:3'): start event == start target ───────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:844:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:886:3'): end event == end target ───────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:886:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:928:3'): start-end event == start-end target ── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:928:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:970:3'): start event < start target ────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:970:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:1012:3'): start event < start target, periodPrior = -60 ── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1012:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:1054:3'): start event > end target ─────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1054:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:1097:3'): collapse A-B-B-B to A-A+B-B ──────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1097:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:1143:3'): collapse A-B-B-B to A-B ──────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1143:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:1187:3'): collapse A-A-B-B to A-B ──────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1187:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:1231:3'): collapse A-A-B-B to A-B 2 ────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1231:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysLogical.R:1275:3'): collapse A-A-B-B to A+B 2 ────────── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1275:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-pathwaysMultipleTargetsLogical.R:311:3'): Events outside target ── Error in `eunomia_dir()`: could not find function "eunomia_dir" Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysMultipleTargetsLogical.R:311:3 2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) 3. └─duckdb (local) .local(drv, ...) 4. └─duckdb:::path_normalize(dbdir) ── Error ('test-executeTreatmentPatterns.R:28:3'): CDMConnector ──────────────── Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector' Backtrace: ▆ 1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-executeTreatmentPatterns.R:28:3 2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at D:\RCompile\CRANpkg\local\4.3\TreatmentPatterns.Rcheck\tests\testthat\helper-generateCohortTableCDMC.R:5:5 3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) 4. └─duckdb (local) .local(drv, ...) 5. └─duckdb:::path_normalize(dbdir) [ FAIL 50 | WARN 0 | SKIP 25 | PASS 90 ] Error: Test failures Execution halted Flavor: r-oldrel-windows-x86_64