Last updated on 2025-05-19 08:51:29 CEST.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| qvirus | 5 | 5 | 3 |
| viraldomain | 5 | 5 | 3 |
| viralmodels | 5 | 8 |
Current CRAN status: ERROR: 5, NOTE: 5, OK: 3
Version: 0.0.3
Check: DESCRIPTION meta-information
Result: NOTE
Missing dependency on R >= 4.1.0 because package code uses the pipe
|> or function shorthand \(...) syntax added in R 4.1.0.
File(s) using such syntax:
‘complex_check.R’ ‘create_interactions.R’ ‘estimate_payoffs.R’
‘mse.InteractionClassification.R’ ‘nearest_payoff.Rd’
‘summary.InteractionClassification.R’ ‘summary.payoffs.R’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-windows-x86_64
Version: 0.0.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [20s/24s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(qvirus)
>
> test_check("qvirus")
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
matches
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Loading required package: Formula
Loading required package: plotmo
Loading required package: plotrix
Loading required package: parsnip
[ FAIL 2 | WARN 0 | SKIP 19 | PASS 0 ]
══ Skipped tests (19) ══════════════════════════════════════════════════════════
• On CRAN (19): 'test-InteractionClassification.R:10:3',
'test-complex_check.R:4:3', 'test-conjugate_transpose.R:5:3',
'test-create_interactions.R:4:3',
'test-mse.InteractionClassification.R:13:3', 'test-nearest_payoff.R:42:3',
'test-normalize_check.R:4:3', 'test-payoffs_list.R:23:3',
'test-phen_hiv.R:9:3', 'test-plot.InteractionClassification.R:14:3',
'test-plot.interaction.R:11:3',
'test-print.InteractionClassification.R:13:3',
'test-print.interaction.R:9:3', 'test-pure_qubit1.R:6:3',
'test-pure_qubit2.R:8:3', 'test-simulate_entanglement.R:6:3',
'test-six_state.R:4:3', 'test-summary.InteractionClassification.R:13:3',
'test-summary.interaction.R:10:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-estimate_payoffs.R:6:3'): estimate_payoffs returns correct output ──
<packageNotFoundError/error/condition>
Error in `library(kknn)`: there is no package called 'kknn'
Backtrace:
▆
1. └─base::library(kknn) at test-estimate_payoffs.R:6:3
── Error ('test-summary.payoffs.R:6:3'): `summary.payoffs()` works as expected ──
<packageNotFoundError/error/condition>
Error in `library(kknn)`: there is no package called 'kknn'
Backtrace:
▆
1. └─base::library(kknn) at test-summary.payoffs.R:6:3
[ FAIL 2 | WARN 0 | SKIP 19 | PASS 0 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.0.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [14s/19s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(qvirus)
>
> test_check("qvirus")
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
matches
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Loading required package: Formula
Loading required package: plotmo
Loading required package: plotrix
Loading required package: parsnip
[ FAIL 2 | WARN 0 | SKIP 19 | PASS 0 ]
══ Skipped tests (19) ══════════════════════════════════════════════════════════
• On CRAN (19): 'test-InteractionClassification.R:10:3',
'test-complex_check.R:4:3', 'test-conjugate_transpose.R:5:3',
'test-create_interactions.R:4:3',
'test-mse.InteractionClassification.R:13:3', 'test-nearest_payoff.R:42:3',
'test-normalize_check.R:4:3', 'test-payoffs_list.R:23:3',
'test-phen_hiv.R:9:3', 'test-plot.InteractionClassification.R:14:3',
'test-plot.interaction.R:11:3',
'test-print.InteractionClassification.R:13:3',
'test-print.interaction.R:9:3', 'test-pure_qubit1.R:6:3',
'test-pure_qubit2.R:8:3', 'test-simulate_entanglement.R:6:3',
'test-six_state.R:4:3', 'test-summary.InteractionClassification.R:13:3',
'test-summary.interaction.R:10:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-estimate_payoffs.R:6:3'): estimate_payoffs returns correct output ──
<packageNotFoundError/error/condition>
Error in `library(kknn)`: there is no package called 'kknn'
Backtrace:
▆
1. └─base::library(kknn) at test-estimate_payoffs.R:6:3
── Error ('test-summary.payoffs.R:6:3'): `summary.payoffs()` works as expected ──
<packageNotFoundError/error/condition>
Error in `library(kknn)`: there is no package called 'kknn'
Backtrace:
▆
1. └─base::library(kknn) at test-summary.payoffs.R:6:3
[ FAIL 2 | WARN 0 | SKIP 19 | PASS 0 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.0.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [36s/106s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(qvirus)
>
> test_check("qvirus")
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
matches
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Loading required package: Formula
Loading required package: plotmo
Loading required package: plotrix
Loading required package: parsnip
[ FAIL 2 | WARN 0 | SKIP 19 | PASS 0 ]
══ Skipped tests (19) ══════════════════════════════════════════════════════════
• On CRAN (19): 'test-InteractionClassification.R:10:3',
'test-complex_check.R:4:3', 'test-conjugate_transpose.R:5:3',
'test-create_interactions.R:4:3',
'test-mse.InteractionClassification.R:13:3', 'test-nearest_payoff.R:42:3',
'test-normalize_check.R:4:3', 'test-payoffs_list.R:23:3',
'test-phen_hiv.R:9:3', 'test-plot.InteractionClassification.R:14:3',
'test-plot.interaction.R:11:3',
'test-print.InteractionClassification.R:13:3',
'test-print.interaction.R:9:3', 'test-pure_qubit1.R:6:3',
'test-pure_qubit2.R:8:3', 'test-simulate_entanglement.R:6:3',
'test-six_state.R:4:3', 'test-summary.InteractionClassification.R:13:3',
'test-summary.interaction.R:10:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-estimate_payoffs.R:6:3'): estimate_payoffs returns correct output ──
<packageNotFoundError/error/condition>
Error in `library(kknn)`: there is no package called 'kknn'
Backtrace:
▆
1. └─base::library(kknn) at test-estimate_payoffs.R:6:3
── Error ('test-summary.payoffs.R:6:3'): `summary.payoffs()` works as expected ──
<packageNotFoundError/error/condition>
Error in `library(kknn)`: there is no package called 'kknn'
Backtrace:
▆
1. └─base::library(kknn) at test-summary.payoffs.R:6:3
[ FAIL 2 | WARN 0 | SKIP 19 | PASS 0 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.0.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [33s/87s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(qvirus)
>
> test_check("qvirus")
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
matches
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Loading required package: Formula
Loading required package: plotmo
Loading required package: plotrix
Loading required package: parsnip
[ FAIL 2 | WARN 0 | SKIP 19 | PASS 0 ]
══ Skipped tests (19) ══════════════════════════════════════════════════════════
• On CRAN (19): 'test-InteractionClassification.R:10:3',
'test-complex_check.R:4:3', 'test-conjugate_transpose.R:5:3',
'test-create_interactions.R:4:3',
'test-mse.InteractionClassification.R:13:3', 'test-nearest_payoff.R:42:3',
'test-normalize_check.R:4:3', 'test-payoffs_list.R:23:3',
'test-phen_hiv.R:9:3', 'test-plot.InteractionClassification.R:14:3',
'test-plot.interaction.R:11:3',
'test-print.InteractionClassification.R:13:3',
'test-print.interaction.R:9:3', 'test-pure_qubit1.R:6:3',
'test-pure_qubit2.R:8:3', 'test-simulate_entanglement.R:6:3',
'test-six_state.R:4:3', 'test-summary.InteractionClassification.R:13:3',
'test-summary.interaction.R:10:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-estimate_payoffs.R:6:3'): estimate_payoffs returns correct output ──
<packageNotFoundError/error/condition>
Error in `library(kknn)`: there is no package called 'kknn'
Backtrace:
▆
1. └─base::library(kknn) at test-estimate_payoffs.R:6:3
── Error ('test-summary.payoffs.R:6:3'): `summary.payoffs()` works as expected ──
<packageNotFoundError/error/condition>
Error in `library(kknn)`: there is no package called 'kknn'
Backtrace:
▆
1. └─base::library(kknn) at test-summary.payoffs.R:6:3
[ FAIL 2 | WARN 0 | SKIP 19 | PASS 0 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.0.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [19s/23s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(qvirus)
>
> test_check("qvirus")
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
matches
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Loading required package: Formula
Loading required package: plotmo
Loading required package: plotrix
Loading required package: parsnip
[ FAIL 2 | WARN 0 | SKIP 19 | PASS 0 ]
══ Skipped tests (19) ══════════════════════════════════════════════════════════
• On CRAN (19): 'test-InteractionClassification.R:10:3',
'test-complex_check.R:4:3', 'test-conjugate_transpose.R:5:3',
'test-create_interactions.R:4:3',
'test-mse.InteractionClassification.R:13:3', 'test-nearest_payoff.R:42:3',
'test-normalize_check.R:4:3', 'test-payoffs_list.R:23:3',
'test-phen_hiv.R:9:3', 'test-plot.InteractionClassification.R:14:3',
'test-plot.interaction.R:11:3',
'test-print.InteractionClassification.R:13:3',
'test-print.interaction.R:9:3', 'test-pure_qubit1.R:6:3',
'test-pure_qubit2.R:8:3', 'test-simulate_entanglement.R:6:3',
'test-six_state.R:4:3', 'test-summary.InteractionClassification.R:13:3',
'test-summary.interaction.R:10:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-estimate_payoffs.R:6:3'): estimate_payoffs returns correct output ──
<packageNotFoundError/error/condition>
Error in `library(kknn)`: there is no package called 'kknn'
Backtrace:
▆
1. └─base::library(kknn) at test-estimate_payoffs.R:6:3
── Error ('test-summary.payoffs.R:6:3'): `summary.payoffs()` works as expected ──
<packageNotFoundError/error/condition>
Error in `library(kknn)`: there is no package called 'kknn'
Backtrace:
▆
1. └─base::library(kknn) at test-summary.payoffs.R:6:3
[ FAIL 2 | WARN 0 | SKIP 19 | PASS 0 ]
Error: Test failures
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.0.3
Check: DESCRIPTION meta-information
Result: NOTE
Missing dependency on R >= 4.1.0 because package code uses the pipe
|> or function shorthand \(...) syntax added in R 4.1.0.
File(s) using such syntax:
‘complex_check.R’ ‘create_interactions.R’ ‘estimate_payoffs.R’
‘mse.InteractionClassification.R’
‘summary.InteractionClassification.R’ ‘summary.payoffs.R’
Flavor: r-release-macos-x86_64
Current CRAN status: ERROR: 5, NOTE: 5, OK: 3
Version: 0.0.6
Check: DESCRIPTION meta-information
Result: NOTE
Missing dependency on R >= 4.1.0 because package code uses the pipe
|> or function shorthand \(...) syntax added in R 4.1.0.
File(s) using such syntax:
‘knn_domain_score.R’ ‘knn_domain_score.Rd’ ‘mars_domain_score.R’
‘mars_domain_score.Rd’ ‘nn_domain_score.R’ ‘nn_domain_score.Rd’
‘normalized_domain_plot.R’ ‘normalized_domain_plot.Rd’
‘rf_domain_score.R’ ‘simple_domain_plot.R’ ‘simple_domain_plot.Rd’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-windows-x86_64
Version: 0.0.6
Check: tests
Result: ERROR
Running ‘testthat.R’ [7s/9s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(viraldomain)
>
> test_check("viraldomain")
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
matches
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
[ FAIL 1 | WARN 0 | SKIP 5 | PASS 0 ]
══ Skipped tests (5) ═══════════════════════════════════════════════════════════
• On CRAN (5): 'test-mars_domain_score.R:11:3', 'test-nn_domain_score.R:11:3',
'test-normalized_domain_plot.R:11:3', 'test-rf_domain_score.R:11:3',
'test-simple_domain_plot.R:11:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-knn_domain_score.R:11:3'): `knn_domain_score()` works ──────────
Error in `fit_xy(spec, x = mold$predictors, y = mold$outcomes, case_weights = case_weights,
control = control_parsnip)`: Please install the kknn package to use this engine.
Backtrace:
▆
1. ├─base::print(...)
2. └─viraldomain::knn_domain_score(...)
3. ├─dplyr::bind_cols(...)
4. │ └─rlang::list2(...)
5. ├─stats::predict(...)
6. ├─parsnip::fit(...)
7. └─workflows:::fit.workflow(...)
8. └─workflows::.fit_model(workflow, control)
9. ├─generics::fit(action_model, workflow = workflow, control = control)
10. └─workflows:::fit.action_model(...)
11. └─workflows:::fit_from_xy(spec, mold, case_weights, control_parsnip)
12. ├─generics::fit_xy(...)
13. └─parsnip::fit_xy.model_spec(...)
14. └─parsnip:::check_installs(object)
15. └─cli::cli_abort(...)
16. └─rlang::abort(...)
[ FAIL 1 | WARN 0 | SKIP 5 | PASS 0 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.0.6
Check: tests
Result: ERROR
Running ‘testthat.R’ [5s/6s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(viraldomain)
>
> test_check("viraldomain")
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
matches
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
[ FAIL 1 | WARN 0 | SKIP 5 | PASS 0 ]
══ Skipped tests (5) ═══════════════════════════════════════════════════════════
• On CRAN (5): 'test-mars_domain_score.R:11:3', 'test-nn_domain_score.R:11:3',
'test-normalized_domain_plot.R:11:3', 'test-rf_domain_score.R:11:3',
'test-simple_domain_plot.R:11:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-knn_domain_score.R:11:3'): `knn_domain_score()` works ──────────
Error in `fit_xy(spec, x = mold$predictors, y = mold$outcomes, case_weights = case_weights,
control = control_parsnip)`: Please install the kknn package to use this engine.
Backtrace:
▆
1. ├─base::print(...)
2. └─viraldomain::knn_domain_score(...)
3. ├─dplyr::bind_cols(...)
4. │ └─rlang::list2(...)
5. ├─stats::predict(...)
6. ├─parsnip::fit(...)
7. └─workflows:::fit.workflow(...)
8. └─workflows::.fit_model(workflow, control)
9. ├─generics::fit(action_model, workflow = workflow, control = control)
10. └─workflows:::fit.action_model(...)
11. └─workflows:::fit_from_xy(spec, mold, case_weights, control_parsnip)
12. ├─generics::fit_xy(...)
13. └─parsnip::fit_xy.model_spec(...)
14. └─parsnip:::check_installs(object)
15. └─cli::cli_abort(...)
16. └─rlang::abort(...)
[ FAIL 1 | WARN 0 | SKIP 5 | PASS 0 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.0.6
Check: tests
Result: ERROR
Running ‘testthat.R’ [12s/32s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(viraldomain)
>
> test_check("viraldomain")
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
matches
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
[ FAIL 1 | WARN 0 | SKIP 5 | PASS 0 ]
══ Skipped tests (5) ═══════════════════════════════════════════════════════════
• On CRAN (5): 'test-mars_domain_score.R:11:3', 'test-nn_domain_score.R:11:3',
'test-normalized_domain_plot.R:11:3', 'test-rf_domain_score.R:11:3',
'test-simple_domain_plot.R:11:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-knn_domain_score.R:11:3'): `knn_domain_score()` works ──────────
Error in `fit_xy(spec, x = mold$predictors, y = mold$outcomes, case_weights = case_weights,
control = control_parsnip)`: Please install the kknn package to use this engine.
Backtrace:
▆
1. ├─base::print(...)
2. └─viraldomain::knn_domain_score(...)
3. ├─dplyr::bind_cols(...)
4. │ └─rlang::list2(...)
5. ├─stats::predict(...)
6. ├─parsnip::fit(...)
7. └─workflows:::fit.workflow(...)
8. └─workflows::.fit_model(workflow, control)
9. ├─generics::fit(action_model, workflow = workflow, control = control)
10. └─workflows:::fit.action_model(...)
11. └─workflows:::fit_from_xy(spec, mold, case_weights, control_parsnip)
12. ├─generics::fit_xy(...)
13. └─parsnip::fit_xy.model_spec(...)
14. └─parsnip:::check_installs(object)
15. └─cli::cli_abort(...)
16. └─rlang::abort(...)
[ FAIL 1 | WARN 0 | SKIP 5 | PASS 0 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.0.6
Check: tests
Result: ERROR
Running ‘testthat.R’ [12s/27s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(viraldomain)
>
> test_check("viraldomain")
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
matches
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
[ FAIL 1 | WARN 0 | SKIP 5 | PASS 0 ]
══ Skipped tests (5) ═══════════════════════════════════════════════════════════
• On CRAN (5): 'test-mars_domain_score.R:11:3', 'test-nn_domain_score.R:11:3',
'test-normalized_domain_plot.R:11:3', 'test-rf_domain_score.R:11:3',
'test-simple_domain_plot.R:11:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-knn_domain_score.R:11:3'): `knn_domain_score()` works ──────────
Error in `fit_xy(spec, x = mold$predictors, y = mold$outcomes, case_weights = case_weights,
control = control_parsnip)`: Please install the kknn package to use this engine.
Backtrace:
▆
1. ├─base::print(...)
2. └─viraldomain::knn_domain_score(...)
3. ├─dplyr::bind_cols(...)
4. │ └─rlang::list2(...)
5. ├─stats::predict(...)
6. ├─parsnip::fit(...)
7. └─workflows:::fit.workflow(...)
8. └─workflows::.fit_model(workflow, control)
9. ├─generics::fit(action_model, workflow = workflow, control = control)
10. └─workflows:::fit.action_model(...)
11. └─workflows:::fit_from_xy(spec, mold, case_weights, control_parsnip)
12. ├─generics::fit_xy(...)
13. └─parsnip::fit_xy.model_spec(...)
14. └─parsnip:::check_installs(object)
15. └─cli::cli_abort(...)
16. └─rlang::abort(...)
[ FAIL 1 | WARN 0 | SKIP 5 | PASS 0 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.0.6
Check: tests
Result: ERROR
Running ‘testthat.R’ [7s/8s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(viraldomain)
>
> test_check("viraldomain")
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
matches
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
[ FAIL 1 | WARN 0 | SKIP 5 | PASS 0 ]
══ Skipped tests (5) ═══════════════════════════════════════════════════════════
• On CRAN (5): 'test-mars_domain_score.R:11:3', 'test-nn_domain_score.R:11:3',
'test-normalized_domain_plot.R:11:3', 'test-rf_domain_score.R:11:3',
'test-simple_domain_plot.R:11:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-knn_domain_score.R:11:3'): `knn_domain_score()` works ──────────
Error in `fit_xy(spec, x = mold$predictors, y = mold$outcomes, case_weights = case_weights,
control = control_parsnip)`: Please install the kknn package to use this engine.
Backtrace:
▆
1. ├─base::print(...)
2. └─viraldomain::knn_domain_score(...)
3. ├─dplyr::bind_cols(...)
4. │ └─rlang::list2(...)
5. ├─stats::predict(...)
6. ├─parsnip::fit(...)
7. └─workflows:::fit.workflow(...)
8. └─workflows::.fit_model(workflow, control)
9. ├─generics::fit(action_model, workflow = workflow, control = control)
10. └─workflows:::fit.action_model(...)
11. └─workflows:::fit_from_xy(spec, mold, case_weights, control_parsnip)
12. ├─generics::fit_xy(...)
13. └─parsnip::fit_xy.model_spec(...)
14. └─parsnip:::check_installs(object)
15. └─cli::cli_abort(...)
16. └─rlang::abort(...)
[ FAIL 1 | WARN 0 | SKIP 5 | PASS 0 ]
Error: Test failures
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.0.6
Check: DESCRIPTION meta-information
Result: NOTE
Missing dependency on R >= 4.1.0 because package code uses the pipe
|> or function shorthand \(...) syntax added in R 4.1.0.
File(s) using such syntax:
‘knn_domain_score.R’ ‘mars_domain_score.R’ ‘nn_domain_score.R’
‘normalized_domain_plot.R’ ‘rf_domain_score.R’ ‘simple_domain_plot.R’
Flavor: r-release-macos-x86_64
Current CRAN status: ERROR: 5, OK: 8
Version: 1.3.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [7s/10s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(viralmodels)
>
> test_check("viralmodels")
-- Attaching core tidyverse packages ------------------------ tidyverse 2.0.0 --
v dplyr 1.1.4 v readr 2.1.5
v forcats 1.0.0 v stringr 1.5.1
v ggplot2 3.5.2 v tibble 3.2.1
v lubridate 1.9.4 v tidyr 1.3.1
v purrr 1.0.4
-- Conflicts ------------------------------------------ tidyverse_conflicts() --
x readr::edition_get() masks testthat::edition_get()
x dplyr::filter() masks stats::filter()
x purrr::is_null() masks testthat::is_null()
x dplyr::lag() masks stats::lag()
x readr::local_edition() masks testthat::local_edition()
x dplyr::matches() masks tidyr::matches(), testthat::matches()
i Use the conflicted package (<http://conflicted.r-lib.org/>) to force all conflicts to become errors
Loading required package: parsnip
Attaching package: 'kernlab'
The following object is masked from 'package:purrr':
cross
The following object is masked from 'package:ggplot2':
alpha
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 0 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-viralmodel.R:6:3'): `viralmodel()` works ───────────────────────
<packageNotFoundError/error/condition>
Error in `library(kknn)`: there is no package called 'kknn'
Backtrace:
▆
1. └─base::library(kknn) at test-viralmodel.R:6:3
── Error ('test-viralpreds.R:5:3'): viralpreds() works ─────────────────────────
<packageNotFoundError/error/condition>
Error in `library(kknn)`: there is no package called 'kknn'
Backtrace:
▆
1. └─base::library(kknn) at test-viralpreds.R:5:3
── Error ('test-viraltab.R:6:3'): viraltab() works ─────────────────────────────
<packageNotFoundError/error/condition>
Error in `library(kknn)`: there is no package called 'kknn'
Backtrace:
▆
1. └─base::library(kknn) at test-viraltab.R:6:3
── Error ('test-viralvis.R:6:3'): `viralvis()` plots as expected ───────────────
<packageNotFoundError/error/condition>
Error in `library(kknn)`: there is no package called 'kknn'
Backtrace:
▆
1. └─base::library(kknn) at test-viralvis.R:6:3
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 0 ]
Deleting unused snapshots:
• viralvis/viralvis.svg
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.3.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [5s/6s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(viralmodels)
>
> test_check("viralmodels")
-- Attaching core tidyverse packages ------------------------ tidyverse 2.0.0 --
v dplyr 1.1.4 v readr 2.1.5
v forcats 1.0.0 v stringr 1.5.1
v ggplot2 3.5.2 v tibble 3.2.1
v lubridate 1.9.4 v tidyr 1.3.1
v purrr 1.0.4
-- Conflicts ------------------------------------------ tidyverse_conflicts() --
x readr::edition_get() masks testthat::edition_get()
x dplyr::filter() masks stats::filter()
x purrr::is_null() masks testthat::is_null()
x dplyr::lag() masks stats::lag()
x readr::local_edition() masks testthat::local_edition()
x dplyr::matches() masks tidyr::matches(), testthat::matches()
i Use the conflicted package (<http://conflicted.r-lib.org/>) to force all conflicts to become errors
Loading required package: parsnip
Attaching package: 'kernlab'
The following object is masked from 'package:purrr':
cross
The following object is masked from 'package:ggplot2':
alpha
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 0 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-viralmodel.R:6:3'): `viralmodel()` works ───────────────────────
<packageNotFoundError/error/condition>
Error in `library(kknn)`: there is no package called 'kknn'
Backtrace:
▆
1. └─base::library(kknn) at test-viralmodel.R:6:3
── Error ('test-viralpreds.R:5:3'): viralpreds() works ─────────────────────────
<packageNotFoundError/error/condition>
Error in `library(kknn)`: there is no package called 'kknn'
Backtrace:
▆
1. └─base::library(kknn) at test-viralpreds.R:5:3
── Error ('test-viraltab.R:6:3'): viraltab() works ─────────────────────────────
<packageNotFoundError/error/condition>
Error in `library(kknn)`: there is no package called 'kknn'
Backtrace:
▆
1. └─base::library(kknn) at test-viraltab.R:6:3
── Error ('test-viralvis.R:6:3'): `viralvis()` plots as expected ───────────────
<packageNotFoundError/error/condition>
Error in `library(kknn)`: there is no package called 'kknn'
Backtrace:
▆
1. └─base::library(kknn) at test-viralvis.R:6:3
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 0 ]
Deleting unused snapshots:
• viralvis/viralvis.svg
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.3.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [11s/31s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(viralmodels)
>
> test_check("viralmodels")
-- Attaching core tidyverse packages ------------------------ tidyverse 2.0.0 --
v dplyr 1.1.4 v readr 2.1.5
v forcats 1.0.0 v stringr 1.5.1
v ggplot2 3.5.2 v tibble 3.2.1
v lubridate 1.9.4 v tidyr 1.3.1
v purrr 1.0.4
-- Conflicts ------------------------------------------ tidyverse_conflicts() --
x readr::edition_get() masks testthat::edition_get()
x dplyr::filter() masks stats::filter()
x purrr::is_null() masks testthat::is_null()
x dplyr::lag() masks stats::lag()
x readr::local_edition() masks testthat::local_edition()
x dplyr::matches() masks tidyr::matches(), testthat::matches()
i Use the conflicted package (<http://conflicted.r-lib.org/>) to force all conflicts to become errors
Loading required package: parsnip
Attaching package: 'kernlab'
The following object is masked from 'package:purrr':
cross
The following object is masked from 'package:ggplot2':
alpha
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 0 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-viralmodel.R:6:3'): `viralmodel()` works ───────────────────────
<packageNotFoundError/error/condition>
Error in `library(kknn)`: there is no package called 'kknn'
Backtrace:
▆
1. └─base::library(kknn) at test-viralmodel.R:6:3
── Error ('test-viralpreds.R:5:3'): viralpreds() works ─────────────────────────
<packageNotFoundError/error/condition>
Error in `library(kknn)`: there is no package called 'kknn'
Backtrace:
▆
1. └─base::library(kknn) at test-viralpreds.R:5:3
── Error ('test-viraltab.R:6:3'): viraltab() works ─────────────────────────────
<packageNotFoundError/error/condition>
Error in `library(kknn)`: there is no package called 'kknn'
Backtrace:
▆
1. └─base::library(kknn) at test-viraltab.R:6:3
── Error ('test-viralvis.R:6:3'): `viralvis()` plots as expected ───────────────
<packageNotFoundError/error/condition>
Error in `library(kknn)`: there is no package called 'kknn'
Backtrace:
▆
1. └─base::library(kknn) at test-viralvis.R:6:3
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 0 ]
Deleting unused snapshots:
• viralvis/viralvis.svg
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.3.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [11s/42s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(viralmodels)
>
> test_check("viralmodels")
-- Attaching core tidyverse packages ------------------------ tidyverse 2.0.0 --
v dplyr 1.1.4 v readr 2.1.5
v forcats 1.0.0 v stringr 1.5.1
v ggplot2 3.5.2 v tibble 3.2.1
v lubridate 1.9.4 v tidyr 1.3.1
v purrr 1.0.4
-- Conflicts ------------------------------------------ tidyverse_conflicts() --
x readr::edition_get() masks testthat::edition_get()
x dplyr::filter() masks stats::filter()
x purrr::is_null() masks testthat::is_null()
x dplyr::lag() masks stats::lag()
x readr::local_edition() masks testthat::local_edition()
x dplyr::matches() masks tidyr::matches(), testthat::matches()
i Use the conflicted package (<http://conflicted.r-lib.org/>) to force all conflicts to become errors
Loading required package: parsnip
Attaching package: 'kernlab'
The following object is masked from 'package:purrr':
cross
The following object is masked from 'package:ggplot2':
alpha
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 0 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-viralmodel.R:6:3'): `viralmodel()` works ───────────────────────
<packageNotFoundError/error/condition>
Error in `library(kknn)`: there is no package called 'kknn'
Backtrace:
▆
1. └─base::library(kknn) at test-viralmodel.R:6:3
── Error ('test-viralpreds.R:5:3'): viralpreds() works ─────────────────────────
<packageNotFoundError/error/condition>
Error in `library(kknn)`: there is no package called 'kknn'
Backtrace:
▆
1. └─base::library(kknn) at test-viralpreds.R:5:3
── Error ('test-viraltab.R:6:3'): viraltab() works ─────────────────────────────
<packageNotFoundError/error/condition>
Error in `library(kknn)`: there is no package called 'kknn'
Backtrace:
▆
1. └─base::library(kknn) at test-viraltab.R:6:3
── Error ('test-viralvis.R:6:3'): `viralvis()` plots as expected ───────────────
<packageNotFoundError/error/condition>
Error in `library(kknn)`: there is no package called 'kknn'
Backtrace:
▆
1. └─base::library(kknn) at test-viralvis.R:6:3
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 0 ]
Deleting unused snapshots:
• viralvis/viralvis.svg
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.3.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [6s/8s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(viralmodels)
>
> test_check("viralmodels")
-- Attaching core tidyverse packages ------------------------ tidyverse 2.0.0 --
v dplyr 1.1.4 v readr 2.1.5
v forcats 1.0.0 v stringr 1.5.1
v ggplot2 3.5.2 v tibble 3.2.1
v lubridate 1.9.4 v tidyr 1.3.1
v purrr 1.0.4
-- Conflicts ------------------------------------------ tidyverse_conflicts() --
x readr::edition_get() masks testthat::edition_get()
x dplyr::filter() masks stats::filter()
x purrr::is_null() masks testthat::is_null()
x dplyr::lag() masks stats::lag()
x readr::local_edition() masks testthat::local_edition()
x dplyr::matches() masks tidyr::matches(), testthat::matches()
i Use the conflicted package (<http://conflicted.r-lib.org/>) to force all conflicts to become errors
Loading required package: parsnip
Attaching package: 'kernlab'
The following object is masked from 'package:purrr':
cross
The following object is masked from 'package:ggplot2':
alpha
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 0 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-viralmodel.R:6:3'): `viralmodel()` works ───────────────────────
<packageNotFoundError/error/condition>
Error in `library(kknn)`: there is no package called 'kknn'
Backtrace:
▆
1. └─base::library(kknn) at test-viralmodel.R:6:3
── Error ('test-viralpreds.R:5:3'): viralpreds() works ─────────────────────────
<packageNotFoundError/error/condition>
Error in `library(kknn)`: there is no package called 'kknn'
Backtrace:
▆
1. └─base::library(kknn) at test-viralpreds.R:5:3
── Error ('test-viraltab.R:6:3'): viraltab() works ─────────────────────────────
<packageNotFoundError/error/condition>
Error in `library(kknn)`: there is no package called 'kknn'
Backtrace:
▆
1. └─base::library(kknn) at test-viraltab.R:6:3
── Error ('test-viralvis.R:6:3'): `viralvis()` plots as expected ───────────────
<packageNotFoundError/error/condition>
Error in `library(kknn)`: there is no package called 'kknn'
Backtrace:
▆
1. └─base::library(kknn) at test-viralvis.R:6:3
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 0 ]
Deleting unused snapshots:
• viralvis/viralvis.svg
Error: Test failures
Execution halted
Flavor: r-release-linux-x86_64