Last updated on 2024-11-15 19:49:47 CET.
| Package | NOTE | OK |
|---|---|---|
| noia | 10 | 3 |
| sra | 13 | |
| vhica | 10 | 3 |
Current CRAN status: NOTE: 10, OK: 3
Version: 0.97.3
Check: Rd files
Result: NOTE
checkRd: (-1) simulatePop.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulatePop.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulatePop.Rd:42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulatePop.Rd:43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulatePop.Rd:44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulatePop.Rd:45: Lost braces in \itemize; meant \describe ?
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: NOTE: 10, OK: 3
Version: 0.2.8
Check: Rd files
Result: NOTE
checkRd: (-1) div.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) div.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) div.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) image.vhica.Rd:74: Lost braces
74 | The function returns (invisibly) a list of elements (object of class \code{vhicaimage}) which can be used for further analysis: \code{tree} contains the phylogenetic tree (object of class \code{"phylo"}), \code{species} is the vector of species, \code{stats} is a matrix of log10(P-values) (positive elements are minus log10(P) corresponding to positive residuals), code{dS} is a matrix reminding the divergence rates from the data. Calling the method \code{\link{summary.vhicaimage}} on this object returns a nicely formatted data frame.
| ^
checkRd: (-1) read.vhica.Rd:59-74: Lost braces in \itemize; meant \describe ?
checkRd: (-1) read.vhica.Rd:70: Lost braces in \itemize; meant \describe ?
checkRd: (-1) read.vhica.Rd:71: Lost braces in \itemize; meant \describe ?
checkRd: (-1) read.vhica.Rd:72: Lost braces in \itemize; meant \describe ?
checkRd: (-1) read.vhica.Rd:75-92: Lost braces in \itemize; meant \describe ?
checkRd: (-1) read.vhica.Rd:87: Lost braces in \itemize; meant \describe ?
checkRd: (-1) read.vhica.Rd:88: Lost braces in \itemize; meant \describe ?
checkRd: (-1) read.vhica.Rd:89: Lost braces in \itemize; meant \describe ?
checkRd: (-1) read.vhica.Rd:90: Lost braces in \itemize; meant \describe ?
checkRd: (-1) read.vhica.Rd:99: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) read.vhica.Rd:100: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) read.vhica.Rd:101: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) read.vhica.Rd:102: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) read.vhica.Rd:103: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) read.vhica.Rd:104: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) read.vhica.Rd:105: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) vhica-package.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vhica-package.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vhica-package.Rd:26: Lost braces in \itemize; meant \describe ?
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64