CRAN Package Check Results for Maintainer ‘Christopher Jackson <chris.jackson at mrc-bsu.cam.ac.uk>’

Last updated on 2024-12-18 19:49:34 CET.

Package WARN NOTE OK
denstrip 3 10
disbayes 8 5
ecoreg 13
fic 1 5 7
flexsurv 13
MetaAnalyser 13
msm 13
voi 7 6

Package denstrip

Current CRAN status: NOTE: 3, OK: 10

Version: 1.5.4
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: densregion.Rd: contourplot, levelplot densregion.survfit.Rd: survfit denstrip.Rd: trellis.par.get denstrip.legend.Rd: trellis.par.get Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Package disbayes

Current CRAN status: NOTE: 8, OK: 5

Version: 1.1.0
Check: for GNU extensions in Makefiles
Result: NOTE GNU make is a SystemRequirements. Flavors: r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 1.1.0
Check: installed package size
Result: NOTE installed size is 97.1Mb sub-directories of 1Mb or more: libs 96.3Mb Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package ecoreg

Current CRAN status: OK: 13

Package fic

Current CRAN status: WARN: 1, NOTE: 5, OK: 7

Version: 1.0.0
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: fic.survreg.Rd: survreg Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Version: 1.0.0
Check: dependencies in R code
Result: NOTE Namespace in Imports field not imported from: ‘numDeriv’ All declared Imports should be used. Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.0.0
Check: re-building of vignette outputs
Result: WARN Error(s) in re-building vignettes: --- re-building ‘fic.Rnw’ using knitr Error: processing vignette 'fic.Rnw' failed with diagnostics: Running 'texi2dvi' on 'fic.tex' failed. LaTeX errors: ! Undefined control sequence. l.413 \hlkwd{library}\hldef {(}\hlsng{"fic"}\hldef{)} ? ! Emergency stop. ! Emergency stop. l.413 End of file on the terminal! ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘fic.Rnw’ --- re-building ‘linear.Rnw’ using knitr Error: processing vignette 'linear.Rnw' failed with diagnostics: Running 'texi2dvi' on 'linear.tex' failed. LaTeX errors: ! Undefined control sequence. l.102 \hldef {mtcars}\hlopt{$}\hldef{am} \hlkwb{<-} \hlkwd{factor}\hldef{(mtc... ? ! Emergency stop. l.102 End of file on the terminal! ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘linear.Rnw’ --- re-building ‘loss.Rnw’ using knitr Error: processing vignette 'loss.Rnw' failed with diagnostics: Running 'texi2dvi' on 'loss.tex' failed. LaTeX errors: ! Undefined control sequence. l.86 \hlkwd{library}\hldef {(fic)} ? ! Emergency stop. ! Emergency stop. l.86 End of file on the terminal! ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘loss.Rnw’ --- re-building ‘multistate.Rnw’ using knitr Error: processing vignette 'multistate.Rnw' failed with diagnostics: Running 'texi2dvi' on 'multistate.tex' failed. LaTeX errors: ! Undefined control sequence. l.147 \hlkwa{if} \hldef {(}\hlopt{!}\hlkwd{require}\hldef{(}\hlsng{"msm"}\hld... ? ! Emergency stop. l.147 End of file on the terminal! ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘multistate.Rnw’ --- re-building ‘skewnormal.Rnw’ using knitr Error: processing vignette 'skewnormal.Rnw' failed with diagnostics: Running 'texi2dvi' on 'skewnormal.tex' failed. LaTeX errors: ! Undefined control sequence. l.110 \hldef {ldsnorm} \hlkwb{<-} \hlkwa{function}\hldef{(}\hlkwc{x}\hldef{,}... ? ! Emergency stop. l.110 End of file on the terminal! ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘skewnormal.Rnw’ --- re-building ‘survival.Rnw’ using knitr Error: processing vignette 'survival.Rnw' failed with diagnostics: Running 'texi2dvi' on 'survival.tex' failed. LaTeX errors: ! Undefined control sequence. l.97 \hlkwa{if} \hldef {(}\hlopt{!}\hlkwd{require}\hldef{(}\hlsng{"flexsurv"}... ? ! Emergency stop. l.97 End of file on the terminal! ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘survival.Rnw’ SUMMARY: processing the following files failed: ‘fic.Rnw’ ‘linear.Rnw’ ‘loss.Rnw’ ‘multistate.Rnw’ ‘skewnormal.Rnw’ ‘survival.Rnw’ Error: Vignette re-building failed. Execution halted Flavor: r-release-macos-x86_64

Package flexsurv

Current CRAN status: OK: 13

Package MetaAnalyser

Current CRAN status: OK: 13

Package msm

Current CRAN status: OK: 13

Package voi

Current CRAN status: NOTE: 7, OK: 6

Version: 1.0.3
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘INLA’ Flavors: r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 1.0.3
Check: Rd cross-references
Result: NOTE Package unavailable to check Rd xrefs: ‘INLA’ Flavors: r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64