Last updated on 2025-02-07 08:51:59 CET.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| easystats | 1 | 12 | |
| esc | 13 | ||
| ggeffects | 4 | 9 | |
| insight | 7 | 6 | |
| parameters | 13 | ||
| performance | 13 | ||
| sjlabelled | 13 | ||
| sjmisc | 3 | 10 | |
| sjPlot | 13 | ||
| sjstats | 13 |
Current CRAN status: ERROR: 1, OK: 12
Version: 0.7.4
Check: package dependencies
Result: ERROR
Packages required and available but unsuitable versions:
'bayestestR', 'modelbased', 'see'
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-release-macos-arm64
Current CRAN status: OK: 13
Current CRAN status: ERROR: 4, OK: 9
Version: 2.1.0
Check: examples
Result: ERROR
Running examples in ‘ggeffects-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: pool_comparisons
> ### Title: Pool contrasts and comparisons from 'test_predictions()'
> ### Aliases: pool_comparisons
>
> ### ** Examples
>
> ## Don't show:
> if (require("mice")) (if (getRversion() >= "3.4") withAutoprint else force)({ # examplesIf
+ ## End(Don't show)
+ data("nhanes2", package = "mice")
+ imp <- mice::mice(nhanes2, printFlag = FALSE)
+ comparisons <- lapply(1:5, function(i) {
+ m <- lm(bmi ~ age + hyp + chl, data = mice::complete(imp, action = i))
+ test_predictions(m, "age")
+ })
+ pool_comparisons(comparisons)
+ ## Don't show:
+ }) # examplesIf
Loading required package: mice
Attaching package: ‘mice’
The following object is masked from ‘package:stats’:
filter
The following objects are masked from ‘package:base’:
cbind, rbind
> data("nhanes2", package = "mice")
> imp <- mice::mice(nhanes2, printFlag = FALSE)
> comparisons <- lapply(1:5, function(i) {
+ m <- lm(bmi ~ age + hyp + chl, data = mice::complete(imp, action = i))
+ test_predictions(m, "age")
+ })
Error: Assertion failed. One of the following must apply:
* checkmate::check_character(hypothesis): Must comply to pattern '='
* checkmate::check_numeric(hypothesis): Must be of type 'numeric', not
* 'character'
* checkmate::check_formula(hypothesis): Must be a formula, not
* character
* checkmate::check_matrix(hypothesis): Must be of type 'matrix', not
* 'character'
* checkmate::check_function(hypothesis): Must be a function, not
* 'character'
* checkmate::check_null(hypothesis): Must be NULL
Execution halted
Flavors: r-patched-linux-x86_64, r-release-linux-x86_64
Version: 2.1.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [127s/155s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(ggeffects)
> test_check("ggeffects")
You are calculating adjusted predictions on the population-level (i.e.
`type = "fixed"`) for a *generalized* linear mixed model.
This may produce biased estimates due to Jensen's inequality. Consider
setting `bias_correction = TRUE` to correct for this bias.
See also the documentation of the `bias_correction` argument.
Not all rows are shown in the output. Use `print(..., n = Inf)` to show
all rows.
Not all rows are shown in the output. Use `print(..., n = Inf)` to show
all rows.
Running model...
Done!
Some of the focal terms are of type `character`. This may lead to
unexpected results. It is recommended to convert these variables to
factors before fitting the model.
The following variables are of type character: `brand`
Some of the focal terms are of type `character`. This may lead to
unexpected results. It is recommended to convert these variables to
factors before fitting the model.
The following variables are of type character: `brand`
Some of the focal terms are of type `character`. This may lead to
unexpected results. It is recommended to convert these variables to
factors before fitting the model.
The following variables are of type character: `brand`
Iteration 1 - deviance = 39.74973 - criterion = 0.8590917
Iteration 2 - deviance = 10.50328 - criterion = 2.758244
Iteration 3 - deviance = 9.231325 - criterion = 0.1363107
Iteration 4 - deviance = 9.227742 - criterion = 0.0003840654
Iteration 5 - deviance = 9.227742 - criterion = 3.446463e-09
converged
Data were 'prettified'. Consider using `terms="price [all]"` to get
smooth plots.
NOTE: Results may be misleading due to involvement in interactions
NOTE: Results may be misleading due to involvement in interactions
Re-fitting to get Hessian
Re-fitting to get Hessian
Model contains splines or polynomial terms. Consider using `terms="mined
[all]"` to get smooth plots. See also package-vignette 'Adjusted
Predictions at Specific Values'.
Model contains splines or polynomial terms. Consider using `terms="cover
[all]"` to get smooth plots. See also package-vignette 'Adjusted
Predictions at Specific Values'.
Model contains splines or polynomial terms. Consider using `terms="mined
[all]"` to get smooth plots. See also package-vignette 'Adjusted
Predictions at Specific Values'.
Model contains splines or polynomial terms. Consider using `terms="cover
[all]"` to get smooth plots. See also package-vignette 'Adjusted
Predictions at Specific Values'.
Can't compute adjusted predictions, `effects::Effect()` returned an error.
Reason: Invalid operation on a survival time
You may try `ggpredict()` or `ggemmeans()`.
Can't compute adjusted predictions, `effects::Effect()` returned an error.
Reason: non-conformable arguments
You may try `ggpredict()` or `ggemmeans()`.
[ FAIL 15 | WARN 0 | SKIP 74 | PASS 500 ]
══ Skipped tests (74) ══════════════════════════════════════════════════════════
• On CRAN (61): 'test-MCMCglmm.R:1:1', 'test-MixMod.R:1:1',
'test-averaging.R:1:1', 'test-avg_predictions.R:1:1',
'test-backtransform_response.R:1:1', 'test-bias_correction.R:1:1',
'test-brms-categ-cum.R:1:1', 'test-brms-monotonic.R:1:1',
'test-brms-ppd.R:1:1', 'test-brms-trial.R:1:1', 'test-clean_vars.R:1:1',
'test-clm.R:1:1', 'test-clm2.R:1:1', 'test-clmm.R:1:1',
'test-condition.R:1:1', 'test-correct_se_sorting.R:1:1',
'test-decimals.R:1:1', 'test-fixest.R:1:1', 'test-focal_only_random.R:1:1',
'test-format.R:1:1', 'test-gamlss.R:1:1', 'test-gamm4.R:1:1',
'test-glmer.R:2:1', 'test-glmmTMB.R:1:1', 'test-interval_re.R:1:1',
'test-ivreg.R:1:1', 'test-johnson_neyman.R:1:1',
'test-johnson_neyman_numcat.R:1:1', 'test-list_terms.R:36:3',
'test-lmer.R:1:1', 'test-mgcv.R:1:1', 'test-plot-from-vignettes.R:5:1',
'test-plot-ordinal-latent.R:1:1', 'test-plot-show_data.R:1:1',
'test-plot-survival.R:2:1', 'test-plot.R:1:1', 'test-polr.R:21:7',
'test-polr.R:60:7', 'test-pool_comparisons.R:1:1', 'test-print.R:1:1',
'test-print_digits.R:1:1', 'test-print_md.R:1:1',
'test-print_zero_inflation.R:1:1', 'test-resid_over_grid.R:33:5',
'test-rstanarm-ppd.R:1:1', 'test-rstanarm.R:1:1', 'test-sdmTMB.R:1:1',
'test-simulate.R:1:1', 'test-test_predictions-formula.R:1:1',
'test-test_predictions-margin.R:1:1', 'test-test_predictions-mixed.R:1:1',
'test-test_predictions_emmeans.R:133:3',
'test-test_predictions_emmeans.R:168:3',
'test-test_predictions_ggeffects.R:140:3',
'test-test_predictions_ggeffects.R:184:3',
'test-test_predictions_ggeffects.R:193:3',
'test-test_predictions_ggeffects.R:236:5', 'test-vcov.R:1:1',
'test-vglm.R:1:1', 'test-zeroinfl.R:27:3', 'test-zi_prob.R:1:1'
• On Linux (11): 'test-brglm.R:1:1', 'test-ci_backticks-names.R:1:1',
'test-emmeans-weights.R:1:1', 'test-gee.R:1:1', 'test-ggaverage.R:1:1',
'test-glm.R:1:1', 'test-ordinal.R:1:1', 'test-parsnip.R:94:3',
'test-print_subsets.R:1:1', 'test-print_test_predictions-ordinal.R:1:1',
'test-print_test_predictions.R:1:1'
• empty test (2): 'test-polr.R:136:5', 'test-polr.R:142:5'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-betareg.R:51:3'): ggpredict ────────────────────────────────────
Error: Assertion failed. One of the following must apply:
* checkmate::check_character(hypothesis): Must comply to pattern '='
* checkmate::check_numeric(hypothesis): Must be of type 'numeric', not
* 'character'
* checkmate::check_formula(hypothesis): Must be a formula, not
* character
* checkmate::check_matrix(hypothesis): Must be of type 'matrix', not
* 'character'
* checkmate::check_function(hypothesis): Must be a function, not
* 'character'
* checkmate::check_null(hypothesis): Must be NULL
Backtrace:
▆
1. ├─ggeffects::test_predictions(p) at test-betareg.R:51:3
2. └─ggeffects:::test_predictions.ggeffects(p)
3. ├─base::do.call(test_predictions.default, c(my_args, dot_args))
4. └─ggeffects (local) `<fn>`(...)
5. └─ggeffects:::.call_me(fun, fun_args, dot_args, include_random)
6. ├─base::do.call(get(fun, asNamespace("marginaleffects")), all_args)
7. └─marginaleffects (local) `<fn>`(...)
8. └─marginaleffects:::sanitize_hypothesis(hypothesis, ...)
9. └─checkmate::assert(...)
10. └─checkmate:::mstopOrPush(res = msgs, v_name = .var.name, collection = add)
11. └─checkmate:::mstop("Assertion failed. %s", res)
── Error ('test-test_predictions.R:30:3'): test_predictions, categorical, pairwise ──
Error: Assertion failed. One of the following must apply:
* checkmate::check_character(hypothesis): Must comply to pattern '='
* checkmate::check_numeric(hypothesis): Must be of type 'numeric', not
* 'character'
* checkmate::check_formula(hypothesis): Must be a formula, not
* character
* checkmate::check_matrix(hypothesis): Must be of type 'matrix', not
* 'character'
* checkmate::check_function(hypothesis): Must be a function, not
* 'character'
* checkmate::check_null(hypothesis): Must be NULL
Backtrace:
▆
1. ├─ggeffects::test_predictions(model1, c("groups", "episode")) at test-test_predictions.R:30:3
2. └─ggeffects:::test_predictions.default(model1, c("groups", "episode"))
3. └─ggeffects:::.call_me(fun, fun_args, dot_args, include_random)
4. ├─base::do.call(get(fun, asNamespace("marginaleffects")), all_args)
5. └─marginaleffects (local) `<fn>`(...)
6. └─marginaleffects:::sanitize_hypothesis(hypothesis, ...)
7. └─checkmate::assert(...)
8. └─checkmate:::mstopOrPush(res = msgs, v_name = .var.name, collection = add)
9. └─checkmate:::mstop("Assertion failed. %s", res)
── Error ('test-test_predictions.R:63:3'): test_predictions, categorical, pairwise, p_adjust ──
Error: Assertion failed. One of the following must apply:
* checkmate::check_character(hypothesis): Must comply to pattern '='
* checkmate::check_numeric(hypothesis): Must be of type 'numeric', not
* 'character'
* checkmate::check_formula(hypothesis): Must be a formula, not
* character
* checkmate::check_matrix(hypothesis): Must be of type 'matrix', not
* 'character'
* checkmate::check_function(hypothesis): Must be a function, not
* 'character'
* checkmate::check_null(hypothesis): Must be NULL
Backtrace:
▆
1. ├─ggeffects::test_predictions(model1, c("groups", "episode")) at test-test_predictions.R:63:3
2. └─ggeffects:::test_predictions.default(model1, c("groups", "episode"))
3. └─ggeffects:::.call_me(fun, fun_args, dot_args, include_random)
4. ├─base::do.call(get(fun, asNamespace("marginaleffects")), all_args)
5. └─marginaleffects (local) `<fn>`(...)
6. └─marginaleffects:::sanitize_hypothesis(hypothesis, ...)
7. └─checkmate::assert(...)
8. └─checkmate:::mstopOrPush(res = msgs, v_name = .var.name, collection = add)
9. └─checkmate:::mstop("Assertion failed. %s", res)
── Error ('test-test_predictions.R:107:3'): test_predictions, interaction ──────
Error: Assertion failed. One of the following must apply:
* checkmate::check_character(hypothesis): Must comply to pattern '='
* checkmate::check_numeric(hypothesis): Must be of type 'numeric', not
* 'character'
* checkmate::check_formula(hypothesis): Must be a formula, not
* character
* checkmate::check_matrix(hypothesis): Must be of type 'matrix', not
* 'character'
* checkmate::check_function(hypothesis): Must be a function, not
* 'character'
* checkmate::check_null(hypothesis): Must be NULL
Backtrace:
▆
1. ├─ggeffects::test_predictions(model2, c("Sepal.Length", "Species")) at test-test_predictions.R:107:3
2. └─ggeffects:::test_predictions.default(...)
3. └─ggeffects:::.call_me("slopes", fun_args, dot_args, include_random)
4. ├─base::do.call(get(fun, asNamespace("marginaleffects")), all_args)
5. └─marginaleffects (local) `<fn>`(...)
6. └─marginaleffects::comparisons(...)
7. └─marginaleffects:::sanitize_hypothesis(hypothesis, ...)
8. └─checkmate::assert(...)
9. └─checkmate:::mstopOrPush(res = msgs, v_name = .var.name, collection = add)
10. └─checkmate:::mstop("Assertion failed. %s", res)
── Error ('test-test_predictions.R:125:3'): test_predictions, by-argument ──────
Error: Assertion failed. One of the following must apply:
* checkmate::check_character(hypothesis): Must comply to pattern '='
* checkmate::check_numeric(hypothesis): Must be of type 'numeric', not
* 'character'
* checkmate::check_formula(hypothesis): Must be a formula, not
* character
* checkmate::check_matrix(hypothesis): Must be of type 'matrix', not
* 'character'
* checkmate::check_function(hypothesis): Must be a function, not
* 'character'
* checkmate::check_null(hypothesis): Must be NULL
Backtrace:
▆
1. ├─ggeffects::test_predictions(prfilter, by = "c161sex") at test-test_predictions.R:125:3
2. └─ggeffects:::test_predictions.ggeffects(prfilter, by = "c161sex")
3. ├─base::do.call(test_predictions.default, c(my_args, dot_args))
4. └─ggeffects (local) `<fn>`(...)
5. └─ggeffects:::.call_me(fun, fun_args, dot_args, include_random)
6. ├─base::do.call(get(fun, asNamespace("marginaleffects")), all_args)
7. └─marginaleffects (local) `<fn>`(...)
8. └─marginaleffects:::sanitize_hypothesis(hypothesis, ...)
9. └─checkmate::assert(...)
10. └─checkmate:::mstopOrPush(res = msgs, v_name = .var.name, collection = add)
11. └─checkmate:::mstop("Assertion failed. %s", res)
── Error ('test-test_predictions.R:155:3'): test_predictions, categorical, pairwise ──
Error: Assertion failed. One of the following must apply:
* checkmate::check_character(hypothesis): Must comply to pattern '='
* checkmate::check_numeric(hypothesis): Must be of type 'numeric', not
* 'character'
* checkmate::check_formula(hypothesis): Must be a formula, not
* character
* checkmate::check_matrix(hypothesis): Must be of type 'matrix', not
* 'character'
* checkmate::check_function(hypothesis): Must be a function, not
* 'character'
* checkmate::check_null(hypothesis): Must be NULL
Backtrace:
▆
1. ├─ggeffects::test_predictions(model3, c("groups", "episode")) at test-test_predictions.R:155:3
2. └─ggeffects:::test_predictions.default(model3, c("groups", "episode"))
3. └─ggeffects:::.call_me(fun, fun_args, dot_args, include_random)
4. ├─base::suppressMessages(...)
5. │ └─base::withCallingHandlers(...)
6. ├─base::suppressWarnings(...)
7. │ └─base::withCallingHandlers(...)
8. ├─base::do.call(get(fun, asNamespace("marginaleffects")), all_args)
9. └─marginaleffects (local) `<fn>`(...)
10. └─marginaleffects::predictions(...)
11. └─marginaleffects:::sanitize_hypothesis(hypothesis, ...)
12. └─checkmate::assert(...)
13. └─checkmate:::mstopOrPush(res = msgs, v_name = .var.name, collection = add)
14. └─checkmate:::mstop("Assertion failed. %s", res)
── Error ('test-test_predictions.R:221:3'): test_predictions, categorical, one focal, pairwise ──
Error: Assertion failed. One of the following must apply:
* checkmate::check_character(hypothesis): Must comply to pattern '='
* checkmate::check_numeric(hypothesis): Must be of type 'numeric', not
* 'character'
* checkmate::check_formula(hypothesis): Must be a formula, not
* character
* checkmate::check_matrix(hypothesis): Must be of type 'matrix', not
* 'character'
* checkmate::check_function(hypothesis): Must be a function, not
* 'character'
* checkmate::check_null(hypothesis): Must be NULL
Backtrace:
▆
1. ├─ggeffects::test_predictions(m, "Sex") at test-test_predictions.R:221:3
2. └─ggeffects:::test_predictions.default(m, "Sex")
3. └─ggeffects:::.call_me(fun, fun_args, dot_args, include_random)
4. ├─base::suppressMessages(...)
5. │ └─base::withCallingHandlers(...)
6. ├─base::suppressWarnings(...)
7. │ └─base::withCallingHandlers(...)
8. ├─base::do.call(get(fun, asNamespace("marginaleffects")), all_args)
9. └─marginaleffects (local) `<fn>`(...)
10. └─marginaleffects::predictions(...)
11. └─marginaleffects:::sanitize_hypothesis(hypothesis, ...)
12. └─checkmate::assert(...)
13. └─checkmate:::mstopOrPush(res = msgs, v_name = .var.name, collection = add)
14. └─checkmate:::mstop("Assertion failed. %s", res)
── Error ('test-test_predictions.R:244:3'): test_predictions, masked chars in levels ──
Error: Assertion failed. One of the following must apply:
* checkmate::check_character(hypothesis): Must comply to pattern '='
* checkmate::check_numeric(hypothesis): Must be of type 'numeric', not
* 'character'
* checkmate::check_formula(hypothesis): Must be a formula, not
* character
* checkmate::check_matrix(hypothesis): Must be of type 'matrix', not
* 'character'
* checkmate::check_function(hypothesis): Must be a function, not
* 'character'
* checkmate::check_null(hypothesis): Must be NULL
Backtrace:
▆
1. ├─ggeffects::test_predictions(model, c("groups", "sex")) at test-test_predictions.R:244:3
2. └─ggeffects:::test_predictions.default(model, c("groups", "sex"))
3. └─ggeffects:::.call_me(fun, fun_args, dot_args, include_random)
4. ├─base::suppressMessages(...)
5. │ └─base::withCallingHandlers(...)
6. ├─base::suppressWarnings(...)
7. │ └─base::withCallingHandlers(...)
8. ├─base::do.call(get(fun, asNamespace("marginaleffects")), all_args)
9. └─marginaleffects (local) `<fn>`(...)
10. └─marginaleffects::predictions(...)
11. └─marginaleffects:::sanitize_hypothesis(hypothesis, ...)
12. └─checkmate::assert(...)
13. └─checkmate:::mstopOrPush(res = msgs, v_name = .var.name, collection = add)
14. └─checkmate:::mstop("Assertion failed. %s", res)
── Error ('test-test_predictions.R:268:3'): test_predictions, don't drop single columns ──
Error: Assertion failed. One of the following must apply:
* checkmate::check_character(hypothesis): Must comply to pattern '='
* checkmate::check_numeric(hypothesis): Must be of type 'numeric', not
* 'character'
* checkmate::check_formula(hypothesis): Must be a formula, not
* character
* checkmate::check_matrix(hypothesis): Must be of type 'matrix', not
* 'character'
* checkmate::check_function(hypothesis): Must be a function, not
* 'character'
* checkmate::check_null(hypothesis): Must be NULL
Backtrace:
▆
1. ├─testthat::expect_s3_class(...) at test-test_predictions.R:268:3
2. │ └─testthat::quasi_label(enquo(object), arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─ggeffects::test_predictions(m, c("Sepal.Width.factor", "Petal.Width [0.5]"))
5. └─ggeffects:::test_predictions.default(...)
6. └─ggeffects:::.call_me(fun, fun_args, dot_args, include_random)
7. ├─base::suppressMessages(...)
8. │ └─base::withCallingHandlers(...)
9. ├─base::suppressWarnings(...)
10. │ └─base::withCallingHandlers(...)
11. ├─base::do.call(get(fun, asNamespace("marginaleffects")), all_args)
12. └─marginaleffects (local) `<fn>`(...)
13. └─marginaleffects::predictions(...)
14. └─marginaleffects:::sanitize_hypothesis(hypothesis, ...)
15. └─checkmate::assert(...)
16. └─checkmate:::mstopOrPush(res = msgs, v_name = .var.name, collection = add)
17. └─checkmate:::mstop("Assertion failed. %s", res)
── Error ('test-test_predictions.R:284:3'): test_predictions, make sure random effects group is categorical ──
Error: Assertion failed. One of the following must apply:
* checkmate::check_character(hypothesis): Must comply to pattern '='
* checkmate::check_numeric(hypothesis): Must be of type 'numeric', not
* 'character'
* checkmate::check_formula(hypothesis): Must be a formula, not
* character
* checkmate::check_matrix(hypothesis): Must be of type 'matrix', not
* 'character'
* checkmate::check_function(hypothesis): Must be a function, not
* 'character'
* checkmate::check_null(hypothesis): Must be NULL
Backtrace:
▆
1. ├─ggeffects::test_predictions(ggpredict(m, c("Days", "grp"))) at test-test_predictions.R:284:3
2. └─ggeffects:::test_predictions.ggeffects(...)
3. ├─base::do.call(test_predictions.default, c(my_args, dot_args))
4. └─ggeffects (local) `<fn>`(...)
5. └─ggeffects:::.call_me("slopes", fun_args, dot_args, include_random)
6. ├─base::suppressMessages(...)
7. │ └─base::withCallingHandlers(...)
8. ├─base::suppressWarnings(...)
9. │ └─base::withCallingHandlers(...)
10. ├─base::do.call(get(fun, asNamespace("marginaleffects")), all_args)
11. └─marginaleffects (local) `<fn>`(...)
12. └─marginaleffects::comparisons(...)
13. └─marginaleffects:::sanitize_hypothesis(hypothesis, ...)
14. └─checkmate::assert(...)
15. └─checkmate:::mstopOrPush(res = msgs, v_name = .var.name, collection = add)
16. └─checkmate:::mstop("Assertion failed. %s", res)
── Error ('test-test_predictions.R:307:3'): test_predictions, works with glmmTMB and w/o vcov ──
Error: Assertion failed. One of the following must apply:
* checkmate::check_character(hypothesis): Must comply to pattern '='
* checkmate::check_numeric(hypothesis): Must be of type 'numeric', not
* 'character'
* checkmate::check_formula(hypothesis): Must be a formula, not
* character
* checkmate::check_matrix(hypothesis): Must be of type 'matrix', not
* 'character'
* checkmate::check_function(hypothesis): Must be a function, not
* 'character'
* checkmate::check_null(hypothesis): Must be NULL
Backtrace:
▆
1. ├─ggeffects::test_predictions(predictions, verbose = FALSE) at test-test_predictions.R:307:3
2. └─ggeffects:::test_predictions.ggeffects(predictions, verbose = FALSE)
3. ├─base::do.call(test_predictions.default, c(my_args, dot_args))
4. └─ggeffects (local) `<fn>`(...)
5. └─ggeffects:::.call_me(fun, fun_args, dot_args, include_random)
6. ├─base::suppressMessages(...)
7. │ └─base::withCallingHandlers(...)
8. ├─base::suppressWarnings(...)
9. │ └─base::withCallingHandlers(...)
10. ├─base::do.call(get(fun, asNamespace("marginaleffects")), all_args)
11. └─marginaleffects (local) `<fn>`(...)
12. └─marginaleffects::predictions(...)
13. └─marginaleffects:::sanitize_hypothesis(hypothesis, ...)
14. └─checkmate::assert(...)
15. └─checkmate:::mstopOrPush(res = msgs, v_name = .var.name, collection = add)
16. └─checkmate:::mstop("Assertion failed. %s", res)
── Error ('test-test_predictions.R:331:3'): test_predictions, correct order of character vectors ──
Error: Assertion failed. One of the following must apply:
* checkmate::check_character(hypothesis): Must comply to pattern '='
* checkmate::check_numeric(hypothesis): Must be of type 'numeric', not
* 'character'
* checkmate::check_formula(hypothesis): Must be a formula, not
* character
* checkmate::check_matrix(hypothesis): Must be of type 'matrix', not
* 'character'
* checkmate::check_function(hypothesis): Must be a function, not
* 'character'
* checkmate::check_null(hypothesis): Must be NULL
Backtrace:
▆
1. ├─ggeffects::test_predictions(pr1) at test-test_predictions.R:331:3
2. └─ggeffects:::test_predictions.ggeffects(pr1)
3. ├─base::do.call(test_predictions.default, c(my_args, dot_args))
4. └─ggeffects (local) `<fn>`(...)
5. └─ggeffects:::.call_me(fun, fun_args, dot_args, include_random)
6. ├─base::do.call(get(fun, asNamespace("marginaleffects")), all_args)
7. └─marginaleffects (local) `<fn>`(...)
8. └─marginaleffects:::sanitize_hypothesis(hypothesis, ...)
9. └─checkmate::assert(...)
10. └─checkmate:::mstopOrPush(res = msgs, v_name = .var.name, collection = add)
11. └─checkmate:::mstop("Assertion failed. %s", res)
── Error ('test-test_predictions.R:350:3'): test_predictions, zero-inflated models ──
Error: Assertion failed. One of the following must apply:
* checkmate::check_character(hypothesis): Must comply to pattern '='
* checkmate::check_numeric(hypothesis): Must be of type 'numeric', not
* 'character'
* checkmate::check_formula(hypothesis): Must be a formula, not
* character
* checkmate::check_matrix(hypothesis): Must be of type 'matrix', not
* 'character'
* checkmate::check_function(hypothesis): Must be a function, not
* 'character'
* checkmate::check_null(hypothesis): Must be NULL
Backtrace:
▆
1. ├─ggeffects::test_predictions(pr1) at test-test_predictions.R:350:3
2. └─ggeffects:::test_predictions.ggeffects(pr1)
3. ├─base::do.call(test_predictions.default, c(my_args, dot_args))
4. └─ggeffects (local) `<fn>`(...)
5. └─ggeffects:::.call_me(fun, fun_args, dot_args, include_random)
6. ├─base::suppressMessages(...)
7. │ └─base::withCallingHandlers(...)
8. ├─base::suppressWarnings(...)
9. │ └─base::withCallingHandlers(...)
10. ├─base::do.call(get(fun, asNamespace("marginaleffects")), all_args)
11. └─marginaleffects (local) `<fn>`(...)
12. └─marginaleffects::predictions(...)
13. └─marginaleffects:::sanitize_hypothesis(hypothesis, ...)
14. └─checkmate::assert(...)
15. └─checkmate:::mstopOrPush(res = msgs, v_name = .var.name, collection = add)
16. └─checkmate:::mstop("Assertion failed. %s", res)
── Error ('test-test_predictions_emmeans.R:18:3'): test_predictions, engine emmeans ──
Error: Assertion failed. One of the following must apply:
* checkmate::check_character(hypothesis): Must comply to pattern '='
* checkmate::check_numeric(hypothesis): Must be of type 'numeric', not
* 'character'
* checkmate::check_formula(hypothesis): Must be a formula, not
* character
* checkmate::check_matrix(hypothesis): Must be of type 'matrix', not
* 'character'
* checkmate::check_function(hypothesis): Must be a function, not
* 'character'
* checkmate::check_null(hypothesis): Must be NULL
Backtrace:
▆
1. ├─ggeffects::test_predictions(m, "c172code") at test-test_predictions_emmeans.R:18:3
2. └─ggeffects:::test_predictions.default(m, "c172code")
3. └─ggeffects:::.call_me(fun, fun_args, dot_args, include_random)
4. ├─base::do.call(get(fun, asNamespace("marginaleffects")), all_args)
5. └─marginaleffects (local) `<fn>`(...)
6. └─marginaleffects:::sanitize_hypothesis(hypothesis, ...)
7. └─checkmate::assert(...)
8. └─checkmate:::mstopOrPush(res = msgs, v_name = .var.name, collection = add)
9. └─checkmate:::mstop("Assertion failed. %s", res)
── Error ('test-test_predictions_emmeans.R:80:3'): test_predictions, engine emmeans, glm binomial ──
Error: Assertion failed. One of the following must apply:
* checkmate::check_character(hypothesis): Must comply to pattern '='
* checkmate::check_numeric(hypothesis): Must be of type 'numeric', not
* 'character'
* checkmate::check_formula(hypothesis): Must be a formula, not
* character
* checkmate::check_matrix(hypothesis): Must be of type 'matrix', not
* 'character'
* checkmate::check_function(hypothesis): Must be a function, not
* 'character'
* checkmate::check_null(hypothesis): Must be NULL
Backtrace:
▆
1. ├─ggeffects::test_predictions(m, "var_binom", margin = "marginaleffects") at test-test_predictions_emmeans.R:80:3
2. └─ggeffects:::test_predictions.default(m, "var_binom", margin = "marginaleffects")
3. └─ggeffects:::.call_me(fun, fun_args, dot_args, include_random)
4. ├─base::do.call(get(fun, asNamespace("marginaleffects")), all_args)
5. └─marginaleffects (local) `<fn>`(...)
6. └─marginaleffects:::sanitize_hypothesis(hypothesis, ...)
7. └─checkmate::assert(...)
8. └─checkmate:::mstopOrPush(res = msgs, v_name = .var.name, collection = add)
9. └─checkmate:::mstop("Assertion failed. %s", res)
[ FAIL 15 | WARN 0 | SKIP 74 | PASS 500 ]
Error: Test failures
Execution halted
Flavor: r-patched-linux-x86_64
Version: 2.1.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [130s/174s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(ggeffects)
> test_check("ggeffects")
You are calculating adjusted predictions on the population-level (i.e.
`type = "fixed"`) for a *generalized* linear mixed model.
This may produce biased estimates due to Jensen's inequality. Consider
setting `bias_correction = TRUE` to correct for this bias.
See also the documentation of the `bias_correction` argument.
Not all rows are shown in the output. Use `print(..., n = Inf)` to show
all rows.
Not all rows are shown in the output. Use `print(..., n = Inf)` to show
all rows.
Running model...
Done!
Some of the focal terms are of type `character`. This may lead to
unexpected results. It is recommended to convert these variables to
factors before fitting the model.
The following variables are of type character: `brand`
Some of the focal terms are of type `character`. This may lead to
unexpected results. It is recommended to convert these variables to
factors before fitting the model.
The following variables are of type character: `brand`
Some of the focal terms are of type `character`. This may lead to
unexpected results. It is recommended to convert these variables to
factors before fitting the model.
The following variables are of type character: `brand`
Iteration 1 - deviance = 39.74973 - criterion = 0.8590917
Iteration 2 - deviance = 10.50328 - criterion = 2.758244
Iteration 3 - deviance = 9.231325 - criterion = 0.1363107
Iteration 4 - deviance = 9.227742 - criterion = 0.0003840654
Iteration 5 - deviance = 9.227742 - criterion = 3.446463e-09
converged
Data were 'prettified'. Consider using `terms="price [all]"` to get
smooth plots.
NOTE: Results may be misleading due to involvement in interactions
NOTE: Results may be misleading due to involvement in interactions
Re-fitting to get Hessian
Re-fitting to get Hessian
Model contains splines or polynomial terms. Consider using `terms="mined
[all]"` to get smooth plots. See also package-vignette 'Adjusted
Predictions at Specific Values'.
Model contains splines or polynomial terms. Consider using `terms="cover
[all]"` to get smooth plots. See also package-vignette 'Adjusted
Predictions at Specific Values'.
Model contains splines or polynomial terms. Consider using `terms="mined
[all]"` to get smooth plots. See also package-vignette 'Adjusted
Predictions at Specific Values'.
Model contains splines or polynomial terms. Consider using `terms="cover
[all]"` to get smooth plots. See also package-vignette 'Adjusted
Predictions at Specific Values'.
Can't compute adjusted predictions, `effects::Effect()` returned an error.
Reason: Invalid operation on a survival time
You may try `ggpredict()` or `ggemmeans()`.
Can't compute adjusted predictions, `effects::Effect()` returned an error.
Reason: non-conformable arguments
You may try `ggpredict()` or `ggemmeans()`.
[ FAIL 15 | WARN 0 | SKIP 74 | PASS 500 ]
══ Skipped tests (74) ══════════════════════════════════════════════════════════
• On CRAN (61): 'test-MCMCglmm.R:1:1', 'test-MixMod.R:1:1',
'test-averaging.R:1:1', 'test-avg_predictions.R:1:1',
'test-backtransform_response.R:1:1', 'test-bias_correction.R:1:1',
'test-brms-categ-cum.R:1:1', 'test-brms-monotonic.R:1:1',
'test-brms-ppd.R:1:1', 'test-brms-trial.R:1:1', 'test-clean_vars.R:1:1',
'test-clm.R:1:1', 'test-clm2.R:1:1', 'test-clmm.R:1:1',
'test-condition.R:1:1', 'test-correct_se_sorting.R:1:1',
'test-decimals.R:1:1', 'test-fixest.R:1:1', 'test-focal_only_random.R:1:1',
'test-format.R:1:1', 'test-gamlss.R:1:1', 'test-gamm4.R:1:1',
'test-glmer.R:2:1', 'test-glmmTMB.R:1:1', 'test-interval_re.R:1:1',
'test-ivreg.R:1:1', 'test-johnson_neyman.R:1:1',
'test-johnson_neyman_numcat.R:1:1', 'test-list_terms.R:36:3',
'test-lmer.R:1:1', 'test-mgcv.R:1:1', 'test-plot-from-vignettes.R:5:1',
'test-plot-ordinal-latent.R:1:1', 'test-plot-show_data.R:1:1',
'test-plot-survival.R:2:1', 'test-plot.R:1:1', 'test-polr.R:21:7',
'test-polr.R:60:7', 'test-pool_comparisons.R:1:1', 'test-print.R:1:1',
'test-print_digits.R:1:1', 'test-print_md.R:1:1',
'test-print_zero_inflation.R:1:1', 'test-resid_over_grid.R:33:5',
'test-rstanarm-ppd.R:1:1', 'test-rstanarm.R:1:1', 'test-sdmTMB.R:1:1',
'test-simulate.R:1:1', 'test-test_predictions-formula.R:1:1',
'test-test_predictions-margin.R:1:1', 'test-test_predictions-mixed.R:1:1',
'test-test_predictions_emmeans.R:133:3',
'test-test_predictions_emmeans.R:168:3',
'test-test_predictions_ggeffects.R:140:3',
'test-test_predictions_ggeffects.R:184:3',
'test-test_predictions_ggeffects.R:193:3',
'test-test_predictions_ggeffects.R:236:5', 'test-vcov.R:1:1',
'test-vglm.R:1:1', 'test-zeroinfl.R:27:3', 'test-zi_prob.R:1:1'
• On Linux (11): 'test-brglm.R:1:1', 'test-ci_backticks-names.R:1:1',
'test-emmeans-weights.R:1:1', 'test-gee.R:1:1', 'test-ggaverage.R:1:1',
'test-glm.R:1:1', 'test-ordinal.R:1:1', 'test-parsnip.R:94:3',
'test-print_subsets.R:1:1', 'test-print_test_predictions-ordinal.R:1:1',
'test-print_test_predictions.R:1:1'
• empty test (2): 'test-polr.R:136:5', 'test-polr.R:142:5'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-betareg.R:51:3'): ggpredict ────────────────────────────────────
Error: Assertion failed. One of the following must apply:
* checkmate::check_character(hypothesis): Must comply to pattern '='
* checkmate::check_numeric(hypothesis): Must be of type 'numeric', not
* 'character'
* checkmate::check_formula(hypothesis): Must be a formula, not
* character
* checkmate::check_matrix(hypothesis): Must be of type 'matrix', not
* 'character'
* checkmate::check_function(hypothesis): Must be a function, not
* 'character'
* checkmate::check_null(hypothesis): Must be NULL
Backtrace:
▆
1. ├─ggeffects::test_predictions(p) at test-betareg.R:51:3
2. └─ggeffects:::test_predictions.ggeffects(p)
3. ├─base::do.call(test_predictions.default, c(my_args, dot_args))
4. └─ggeffects (local) `<fn>`(...)
5. └─ggeffects:::.call_me(fun, fun_args, dot_args, include_random)
6. ├─base::do.call(get(fun, asNamespace("marginaleffects")), all_args)
7. └─marginaleffects (local) `<fn>`(...)
8. └─marginaleffects:::sanitize_hypothesis(hypothesis, ...)
9. └─checkmate::assert(...)
10. └─checkmate:::mstopOrPush(res = msgs, v_name = .var.name, collection = add)
11. └─checkmate:::mstop("Assertion failed. %s", res)
── Error ('test-test_predictions.R:30:3'): test_predictions, categorical, pairwise ──
Error: Assertion failed. One of the following must apply:
* checkmate::check_character(hypothesis): Must comply to pattern '='
* checkmate::check_numeric(hypothesis): Must be of type 'numeric', not
* 'character'
* checkmate::check_formula(hypothesis): Must be a formula, not
* character
* checkmate::check_matrix(hypothesis): Must be of type 'matrix', not
* 'character'
* checkmate::check_function(hypothesis): Must be a function, not
* 'character'
* checkmate::check_null(hypothesis): Must be NULL
Backtrace:
▆
1. ├─ggeffects::test_predictions(model1, c("groups", "episode")) at test-test_predictions.R:30:3
2. └─ggeffects:::test_predictions.default(model1, c("groups", "episode"))
3. └─ggeffects:::.call_me(fun, fun_args, dot_args, include_random)
4. ├─base::do.call(get(fun, asNamespace("marginaleffects")), all_args)
5. └─marginaleffects (local) `<fn>`(...)
6. └─marginaleffects:::sanitize_hypothesis(hypothesis, ...)
7. └─checkmate::assert(...)
8. └─checkmate:::mstopOrPush(res = msgs, v_name = .var.name, collection = add)
9. └─checkmate:::mstop("Assertion failed. %s", res)
── Error ('test-test_predictions.R:63:3'): test_predictions, categorical, pairwise, p_adjust ──
Error: Assertion failed. One of the following must apply:
* checkmate::check_character(hypothesis): Must comply to pattern '='
* checkmate::check_numeric(hypothesis): Must be of type 'numeric', not
* 'character'
* checkmate::check_formula(hypothesis): Must be a formula, not
* character
* checkmate::check_matrix(hypothesis): Must be of type 'matrix', not
* 'character'
* checkmate::check_function(hypothesis): Must be a function, not
* 'character'
* checkmate::check_null(hypothesis): Must be NULL
Backtrace:
▆
1. ├─ggeffects::test_predictions(model1, c("groups", "episode")) at test-test_predictions.R:63:3
2. └─ggeffects:::test_predictions.default(model1, c("groups", "episode"))
3. └─ggeffects:::.call_me(fun, fun_args, dot_args, include_random)
4. ├─base::do.call(get(fun, asNamespace("marginaleffects")), all_args)
5. └─marginaleffects (local) `<fn>`(...)
6. └─marginaleffects:::sanitize_hypothesis(hypothesis, ...)
7. └─checkmate::assert(...)
8. └─checkmate:::mstopOrPush(res = msgs, v_name = .var.name, collection = add)
9. └─checkmate:::mstop("Assertion failed. %s", res)
── Error ('test-test_predictions.R:107:3'): test_predictions, interaction ──────
Error: Assertion failed. One of the following must apply:
* checkmate::check_character(hypothesis): Must comply to pattern '='
* checkmate::check_numeric(hypothesis): Must be of type 'numeric', not
* 'character'
* checkmate::check_formula(hypothesis): Must be a formula, not
* character
* checkmate::check_matrix(hypothesis): Must be of type 'matrix', not
* 'character'
* checkmate::check_function(hypothesis): Must be a function, not
* 'character'
* checkmate::check_null(hypothesis): Must be NULL
Backtrace:
▆
1. ├─ggeffects::test_predictions(model2, c("Sepal.Length", "Species")) at test-test_predictions.R:107:3
2. └─ggeffects:::test_predictions.default(...)
3. └─ggeffects:::.call_me("slopes", fun_args, dot_args, include_random)
4. ├─base::do.call(get(fun, asNamespace("marginaleffects")), all_args)
5. └─marginaleffects (local) `<fn>`(...)
6. └─marginaleffects::comparisons(...)
7. └─marginaleffects:::sanitize_hypothesis(hypothesis, ...)
8. └─checkmate::assert(...)
9. └─checkmate:::mstopOrPush(res = msgs, v_name = .var.name, collection = add)
10. └─checkmate:::mstop("Assertion failed. %s", res)
── Error ('test-test_predictions.R:125:3'): test_predictions, by-argument ──────
Error: Assertion failed. One of the following must apply:
* checkmate::check_character(hypothesis): Must comply to pattern '='
* checkmate::check_numeric(hypothesis): Must be of type 'numeric', not
* 'character'
* checkmate::check_formula(hypothesis): Must be a formula, not
* character
* checkmate::check_matrix(hypothesis): Must be of type 'matrix', not
* 'character'
* checkmate::check_function(hypothesis): Must be a function, not
* 'character'
* checkmate::check_null(hypothesis): Must be NULL
Backtrace:
▆
1. ├─ggeffects::test_predictions(prfilter, by = "c161sex") at test-test_predictions.R:125:3
2. └─ggeffects:::test_predictions.ggeffects(prfilter, by = "c161sex")
3. ├─base::do.call(test_predictions.default, c(my_args, dot_args))
4. └─ggeffects (local) `<fn>`(...)
5. └─ggeffects:::.call_me(fun, fun_args, dot_args, include_random)
6. ├─base::do.call(get(fun, asNamespace("marginaleffects")), all_args)
7. └─marginaleffects (local) `<fn>`(...)
8. └─marginaleffects:::sanitize_hypothesis(hypothesis, ...)
9. └─checkmate::assert(...)
10. └─checkmate:::mstopOrPush(res = msgs, v_name = .var.name, collection = add)
11. └─checkmate:::mstop("Assertion failed. %s", res)
── Error ('test-test_predictions.R:155:3'): test_predictions, categorical, pairwise ──
Error: Assertion failed. One of the following must apply:
* checkmate::check_character(hypothesis): Must comply to pattern '='
* checkmate::check_numeric(hypothesis): Must be of type 'numeric', not
* 'character'
* checkmate::check_formula(hypothesis): Must be a formula, not
* character
* checkmate::check_matrix(hypothesis): Must be of type 'matrix', not
* 'character'
* checkmate::check_function(hypothesis): Must be a function, not
* 'character'
* checkmate::check_null(hypothesis): Must be NULL
Backtrace:
▆
1. ├─ggeffects::test_predictions(model3, c("groups", "episode")) at test-test_predictions.R:155:3
2. └─ggeffects:::test_predictions.default(model3, c("groups", "episode"))
3. └─ggeffects:::.call_me(fun, fun_args, dot_args, include_random)
4. ├─base::suppressMessages(...)
5. │ └─base::withCallingHandlers(...)
6. ├─base::suppressWarnings(...)
7. │ └─base::withCallingHandlers(...)
8. ├─base::do.call(get(fun, asNamespace("marginaleffects")), all_args)
9. └─marginaleffects (local) `<fn>`(...)
10. └─marginaleffects::predictions(...)
11. └─marginaleffects:::sanitize_hypothesis(hypothesis, ...)
12. └─checkmate::assert(...)
13. └─checkmate:::mstopOrPush(res = msgs, v_name = .var.name, collection = add)
14. └─checkmate:::mstop("Assertion failed. %s", res)
── Error ('test-test_predictions.R:221:3'): test_predictions, categorical, one focal, pairwise ──
Error: Assertion failed. One of the following must apply:
* checkmate::check_character(hypothesis): Must comply to pattern '='
* checkmate::check_numeric(hypothesis): Must be of type 'numeric', not
* 'character'
* checkmate::check_formula(hypothesis): Must be a formula, not
* character
* checkmate::check_matrix(hypothesis): Must be of type 'matrix', not
* 'character'
* checkmate::check_function(hypothesis): Must be a function, not
* 'character'
* checkmate::check_null(hypothesis): Must be NULL
Backtrace:
▆
1. ├─ggeffects::test_predictions(m, "Sex") at test-test_predictions.R:221:3
2. └─ggeffects:::test_predictions.default(m, "Sex")
3. └─ggeffects:::.call_me(fun, fun_args, dot_args, include_random)
4. ├─base::suppressMessages(...)
5. │ └─base::withCallingHandlers(...)
6. ├─base::suppressWarnings(...)
7. │ └─base::withCallingHandlers(...)
8. ├─base::do.call(get(fun, asNamespace("marginaleffects")), all_args)
9. └─marginaleffects (local) `<fn>`(...)
10. └─marginaleffects::predictions(...)
11. └─marginaleffects:::sanitize_hypothesis(hypothesis, ...)
12. └─checkmate::assert(...)
13. └─checkmate:::mstopOrPush(res = msgs, v_name = .var.name, collection = add)
14. └─checkmate:::mstop("Assertion failed. %s", res)
── Error ('test-test_predictions.R:244:3'): test_predictions, masked chars in levels ──
Error: Assertion failed. One of the following must apply:
* checkmate::check_character(hypothesis): Must comply to pattern '='
* checkmate::check_numeric(hypothesis): Must be of type 'numeric', not
* 'character'
* checkmate::check_formula(hypothesis): Must be a formula, not
* character
* checkmate::check_matrix(hypothesis): Must be of type 'matrix', not
* 'character'
* checkmate::check_function(hypothesis): Must be a function, not
* 'character'
* checkmate::check_null(hypothesis): Must be NULL
Backtrace:
▆
1. ├─ggeffects::test_predictions(model, c("groups", "sex")) at test-test_predictions.R:244:3
2. └─ggeffects:::test_predictions.default(model, c("groups", "sex"))
3. └─ggeffects:::.call_me(fun, fun_args, dot_args, include_random)
4. ├─base::suppressMessages(...)
5. │ └─base::withCallingHandlers(...)
6. ├─base::suppressWarnings(...)
7. │ └─base::withCallingHandlers(...)
8. ├─base::do.call(get(fun, asNamespace("marginaleffects")), all_args)
9. └─marginaleffects (local) `<fn>`(...)
10. └─marginaleffects::predictions(...)
11. └─marginaleffects:::sanitize_hypothesis(hypothesis, ...)
12. └─checkmate::assert(...)
13. └─checkmate:::mstopOrPush(res = msgs, v_name = .var.name, collection = add)
14. └─checkmate:::mstop("Assertion failed. %s", res)
── Error ('test-test_predictions.R:268:3'): test_predictions, don't drop single columns ──
Error: Assertion failed. One of the following must apply:
* checkmate::check_character(hypothesis): Must comply to pattern '='
* checkmate::check_numeric(hypothesis): Must be of type 'numeric', not
* 'character'
* checkmate::check_formula(hypothesis): Must be a formula, not
* character
* checkmate::check_matrix(hypothesis): Must be of type 'matrix', not
* 'character'
* checkmate::check_function(hypothesis): Must be a function, not
* 'character'
* checkmate::check_null(hypothesis): Must be NULL
Backtrace:
▆
1. ├─testthat::expect_s3_class(...) at test-test_predictions.R:268:3
2. │ └─testthat::quasi_label(enquo(object), arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─ggeffects::test_predictions(m, c("Sepal.Width.factor", "Petal.Width [0.5]"))
5. └─ggeffects:::test_predictions.default(...)
6. └─ggeffects:::.call_me(fun, fun_args, dot_args, include_random)
7. ├─base::suppressMessages(...)
8. │ └─base::withCallingHandlers(...)
9. ├─base::suppressWarnings(...)
10. │ └─base::withCallingHandlers(...)
11. ├─base::do.call(get(fun, asNamespace("marginaleffects")), all_args)
12. └─marginaleffects (local) `<fn>`(...)
13. └─marginaleffects::predictions(...)
14. └─marginaleffects:::sanitize_hypothesis(hypothesis, ...)
15. └─checkmate::assert(...)
16. └─checkmate:::mstopOrPush(res = msgs, v_name = .var.name, collection = add)
17. └─checkmate:::mstop("Assertion failed. %s", res)
── Error ('test-test_predictions.R:284:3'): test_predictions, make sure random effects group is categorical ──
Error: Assertion failed. One of the following must apply:
* checkmate::check_character(hypothesis): Must comply to pattern '='
* checkmate::check_numeric(hypothesis): Must be of type 'numeric', not
* 'character'
* checkmate::check_formula(hypothesis): Must be a formula, not
* character
* checkmate::check_matrix(hypothesis): Must be of type 'matrix', not
* 'character'
* checkmate::check_function(hypothesis): Must be a function, not
* 'character'
* checkmate::check_null(hypothesis): Must be NULL
Backtrace:
▆
1. ├─ggeffects::test_predictions(ggpredict(m, c("Days", "grp"))) at test-test_predictions.R:284:3
2. └─ggeffects:::test_predictions.ggeffects(...)
3. ├─base::do.call(test_predictions.default, c(my_args, dot_args))
4. └─ggeffects (local) `<fn>`(...)
5. └─ggeffects:::.call_me("slopes", fun_args, dot_args, include_random)
6. ├─base::suppressMessages(...)
7. │ └─base::withCallingHandlers(...)
8. ├─base::suppressWarnings(...)
9. │ └─base::withCallingHandlers(...)
10. ├─base::do.call(get(fun, asNamespace("marginaleffects")), all_args)
11. └─marginaleffects (local) `<fn>`(...)
12. └─marginaleffects::comparisons(...)
13. └─marginaleffects:::sanitize_hypothesis(hypothesis, ...)
14. └─checkmate::assert(...)
15. └─checkmate:::mstopOrPush(res = msgs, v_name = .var.name, collection = add)
16. └─checkmate:::mstop("Assertion failed. %s", res)
── Error ('test-test_predictions.R:307:3'): test_predictions, works with glmmTMB and w/o vcov ──
Error: Assertion failed. One of the following must apply:
* checkmate::check_character(hypothesis): Must comply to pattern '='
* checkmate::check_numeric(hypothesis): Must be of type 'numeric', not
* 'character'
* checkmate::check_formula(hypothesis): Must be a formula, not
* character
* checkmate::check_matrix(hypothesis): Must be of type 'matrix', not
* 'character'
* checkmate::check_function(hypothesis): Must be a function, not
* 'character'
* checkmate::check_null(hypothesis): Must be NULL
Backtrace:
▆
1. ├─ggeffects::test_predictions(predictions, verbose = FALSE) at test-test_predictions.R:307:3
2. └─ggeffects:::test_predictions.ggeffects(predictions, verbose = FALSE)
3. ├─base::do.call(test_predictions.default, c(my_args, dot_args))
4. └─ggeffects (local) `<fn>`(...)
5. └─ggeffects:::.call_me(fun, fun_args, dot_args, include_random)
6. ├─base::suppressMessages(...)
7. │ └─base::withCallingHandlers(...)
8. ├─base::suppressWarnings(...)
9. │ └─base::withCallingHandlers(...)
10. ├─base::do.call(get(fun, asNamespace("marginaleffects")), all_args)
11. └─marginaleffects (local) `<fn>`(...)
12. └─marginaleffects::predictions(...)
13. └─marginaleffects:::sanitize_hypothesis(hypothesis, ...)
14. └─checkmate::assert(...)
15. └─checkmate:::mstopOrPush(res = msgs, v_name = .var.name, collection = add)
16. └─checkmate:::mstop("Assertion failed. %s", res)
── Error ('test-test_predictions.R:331:3'): test_predictions, correct order of character vectors ──
Error: Assertion failed. One of the following must apply:
* checkmate::check_character(hypothesis): Must comply to pattern '='
* checkmate::check_numeric(hypothesis): Must be of type 'numeric', not
* 'character'
* checkmate::check_formula(hypothesis): Must be a formula, not
* character
* checkmate::check_matrix(hypothesis): Must be of type 'matrix', not
* 'character'
* checkmate::check_function(hypothesis): Must be a function, not
* 'character'
* checkmate::check_null(hypothesis): Must be NULL
Backtrace:
▆
1. ├─ggeffects::test_predictions(pr1) at test-test_predictions.R:331:3
2. └─ggeffects:::test_predictions.ggeffects(pr1)
3. ├─base::do.call(test_predictions.default, c(my_args, dot_args))
4. └─ggeffects (local) `<fn>`(...)
5. └─ggeffects:::.call_me(fun, fun_args, dot_args, include_random)
6. ├─base::do.call(get(fun, asNamespace("marginaleffects")), all_args)
7. └─marginaleffects (local) `<fn>`(...)
8. └─marginaleffects:::sanitize_hypothesis(hypothesis, ...)
9. └─checkmate::assert(...)
10. └─checkmate:::mstopOrPush(res = msgs, v_name = .var.name, collection = add)
11. └─checkmate:::mstop("Assertion failed. %s", res)
── Error ('test-test_predictions.R:350:3'): test_predictions, zero-inflated models ──
Error: Assertion failed. One of the following must apply:
* checkmate::check_character(hypothesis): Must comply to pattern '='
* checkmate::check_numeric(hypothesis): Must be of type 'numeric', not
* 'character'
* checkmate::check_formula(hypothesis): Must be a formula, not
* character
* checkmate::check_matrix(hypothesis): Must be of type 'matrix', not
* 'character'
* checkmate::check_function(hypothesis): Must be a function, not
* 'character'
* checkmate::check_null(hypothesis): Must be NULL
Backtrace:
▆
1. ├─ggeffects::test_predictions(pr1) at test-test_predictions.R:350:3
2. └─ggeffects:::test_predictions.ggeffects(pr1)
3. ├─base::do.call(test_predictions.default, c(my_args, dot_args))
4. └─ggeffects (local) `<fn>`(...)
5. └─ggeffects:::.call_me(fun, fun_args, dot_args, include_random)
6. ├─base::suppressMessages(...)
7. │ └─base::withCallingHandlers(...)
8. ├─base::suppressWarnings(...)
9. │ └─base::withCallingHandlers(...)
10. ├─base::do.call(get(fun, asNamespace("marginaleffects")), all_args)
11. └─marginaleffects (local) `<fn>`(...)
12. └─marginaleffects::predictions(...)
13. └─marginaleffects:::sanitize_hypothesis(hypothesis, ...)
14. └─checkmate::assert(...)
15. └─checkmate:::mstopOrPush(res = msgs, v_name = .var.name, collection = add)
16. └─checkmate:::mstop("Assertion failed. %s", res)
── Error ('test-test_predictions_emmeans.R:18:3'): test_predictions, engine emmeans ──
Error: Assertion failed. One of the following must apply:
* checkmate::check_character(hypothesis): Must comply to pattern '='
* checkmate::check_numeric(hypothesis): Must be of type 'numeric', not
* 'character'
* checkmate::check_formula(hypothesis): Must be a formula, not
* character
* checkmate::check_matrix(hypothesis): Must be of type 'matrix', not
* 'character'
* checkmate::check_function(hypothesis): Must be a function, not
* 'character'
* checkmate::check_null(hypothesis): Must be NULL
Backtrace:
▆
1. ├─ggeffects::test_predictions(m, "c172code") at test-test_predictions_emmeans.R:18:3
2. └─ggeffects:::test_predictions.default(m, "c172code")
3. └─ggeffects:::.call_me(fun, fun_args, dot_args, include_random)
4. ├─base::do.call(get(fun, asNamespace("marginaleffects")), all_args)
5. └─marginaleffects (local) `<fn>`(...)
6. └─marginaleffects:::sanitize_hypothesis(hypothesis, ...)
7. └─checkmate::assert(...)
8. └─checkmate:::mstopOrPush(res = msgs, v_name = .var.name, collection = add)
9. └─checkmate:::mstop("Assertion failed. %s", res)
── Error ('test-test_predictions_emmeans.R:80:3'): test_predictions, engine emmeans, glm binomial ──
Error: Assertion failed. One of the following must apply:
* checkmate::check_character(hypothesis): Must comply to pattern '='
* checkmate::check_numeric(hypothesis): Must be of type 'numeric', not
* 'character'
* checkmate::check_formula(hypothesis): Must be a formula, not
* character
* checkmate::check_matrix(hypothesis): Must be of type 'matrix', not
* 'character'
* checkmate::check_function(hypothesis): Must be a function, not
* 'character'
* checkmate::check_null(hypothesis): Must be NULL
Backtrace:
▆
1. ├─ggeffects::test_predictions(m, "var_binom", margin = "marginaleffects") at test-test_predictions_emmeans.R:80:3
2. └─ggeffects:::test_predictions.default(m, "var_binom", margin = "marginaleffects")
3. └─ggeffects:::.call_me(fun, fun_args, dot_args, include_random)
4. ├─base::do.call(get(fun, asNamespace("marginaleffects")), all_args)
5. └─marginaleffects (local) `<fn>`(...)
6. └─marginaleffects:::sanitize_hypothesis(hypothesis, ...)
7. └─checkmate::assert(...)
8. └─checkmate:::mstopOrPush(res = msgs, v_name = .var.name, collection = add)
9. └─checkmate:::mstop("Assertion failed. %s", res)
[ FAIL 15 | WARN 0 | SKIP 74 | PASS 500 ]
Error: Test failures
Execution halted
Flavor: r-release-linux-x86_64
Version: 2.2.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [4s/4s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(ggeffects)
> test_check("ggeffects")
[ FAIL 1 | WARN 0 | SKIP 114 | PASS 12 ]
══ Skipped tests (114) ═════════════════════════════════════════════════════════
• On CRAN (46): 'test-MCMCglmm.R:1:1', 'test-MixMod.R:1:1',
'test-averaging.R:1:1', 'test-avg_predictions.R:1:1',
'test-backtransform_response.R:1:1', 'test-bias_correction.R:1:1',
'test-brms-categ-cum.R:1:1', 'test-brms-monotonic.R:1:1',
'test-brms-ppd.R:1:1', 'test-brms-trial.R:1:1', 'test-clean_vars.R:1:1',
'test-clm.R:1:1', 'test-clm2.R:1:1', 'test-clmm.R:1:1',
'test-condition.R:1:1', 'test-correct_se_sorting.R:1:1',
'test-decimals.R:1:1', 'test-fixest.R:1:1', 'test-focal_only_random.R:1:1',
'test-format.R:1:1', 'test-gamlss.R:1:1', 'test-gamm4.R:1:1',
'test-glmmTMB.R:1:1', 'test-interval_re.R:1:1', 'test-ivreg.R:1:1',
'test-johnson_neyman.R:1:1', 'test-lmer.R:1:1', 'test-mgcv.R:1:1',
'test-plot-ordinal-latent.R:1:1', 'test-plot-show_data.R:1:1',
'test-plot.R:1:1', 'test-pool_comparisons.R:1:1', 'test-print.R:1:1',
'test-print_digits.R:1:1', 'test-print_md.R:1:1',
'test-print_zero_inflation.R:1:1', 'test-rstanarm-ppd.R:1:1',
'test-rstanarm.R:1:1', 'test-sdmTMB.R:1:1', 'test-simulate.R:1:1',
'test-test_predictions-formula.R:1:1', 'test-test_predictions-margin.R:1:1',
'test-test_predictions-mixed.R:1:1', 'test-vcov.R:1:1', 'test-vglm.R:1:1',
'test-zi_prob.R:1:1'
• On Mac (68): 'test-Gam2.R:1:1', 'test-add_data_missings.R:1:1',
'test-afex.R:1:1', 'test-as_data_frame.R:1:1', 'test-betareg.R:1:1',
'test-brglm.R:1:1', 'test-check_vars.R:1:1', 'test-ci_backticks-names.R:1:1',
'test-contrasts.R:1:1', 'test-contrasts2.R:1:1', 'test-contrasts3.R:1:1',
'test-coxph.R:1:1', 'test-data_grid.R:1:1', 'test-emmeans_factor_char.R:1:1',
'test-extract_values.R:1:1', 'test-focal_character.R:1:1', 'test-gee.R:1:1',
'test-geeglm.R:1:1', 'test-get_titles.R:1:1', 'test-glm.R:1:1',
'test-glmer.R:1:1', 'test-glmrob_base.R:1:1', 'test-gls.R:1:1',
'test-linear-models.R:1:1', 'test-list_terms.R:1:1', 'test-lmrob_base.R:1:1',
'test-logistf.R:1:1', 'test-logitr.R:1:1', 'test-lrm.R:1:1',
'test-mclogit.R:1:1', 'test-mlogit.R:1:1', 'test-negbin.R:1:1',
'test-nestedLogit.R:1:1', 'test-nlme.R:1:1', 'test-offset.R:1:1',
'test-offset_zeroinfl.R:1:1', 'test-on-the-fly-factor.R:1:1',
'test-ordinal.R:1:1', 'test-orm.R:1:1', 'test-parsnip.R:1:1',
'test-percentile_at_values.R:1:1', 'test-plm.R:1:1',
'test-plot-from-vignettes.R:1:1', 'test-plot-survival.R:1:1',
'test-poisson.R:1:1', 'test-polr.R:1:1', 'test-poly-zeroinf.R:1:1',
'test-pool_predictions.R:1:1', 'test-prediction_interval.R:1:1',
'test-print_subsets.R:1:1', 'test-print_test_predictions-ordinal.R:1:1',
'test-print_test_predictions.R:1:1', 'test-raw_data.R:1:1',
'test-resid_over_grid.R:1:1', 'test-rq.R:1:1', 'test-scoping.R:1:1',
'test-speedglm.R:1:1', 'test-splines.R:1:1', 'test-survey.R:1:1',
'test-survreg.R:1:1', 'test-svyglmnb.R:1:1',
'test-test_predictions_emmeans.R:1:1',
'test-test_predictions_ggeffects.R:1:1', 'test-tibble.R:1:1',
'test-tobit.R:1:1', 'test-typical.R:1:1', 'test-vgam.R:1:1',
'test-zeroinfl.R:1:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-ggaverage.R:25:3'): ggaverage works with condition ─────────────
Error in `if (adjust %in% c("bh", "by")) adjust = toupper(adjust)`: argument is of length zero
Backtrace:
▆
1. ├─ggeffects::test_predictions(moff, c("x2", "offset_1 = 1")) at test-ggaverage.R:25:3
2. └─ggeffects:::test_predictions.default(moff, c("x2", "offset_1 = 1"))
3. └─modelbased::estimate_contrasts(...)
4. ├─base::as.data.frame(...)
5. ├─base::merge(...)
6. ├─base::merge.data.frame(...)
7. │ ├─base::nrow(y <- as.data.frame(y))
8. │ └─base::as.data.frame(y)
9. ├─stats::confint(estimated, level = ci, adjust = p_adjust)
10. └─emmeans:::confint.emmGrid(estimated, level = ci, adjust = p_adjust)
11. ├─base::summary(...)
12. └─emmeans:::summary.emmGrid(...)
[ FAIL 1 | WARN 0 | SKIP 114 | PASS 12 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-arm64
Version: 2.1.0
Check: examples
Result: ERROR
Running examples in 'ggeffects-Ex.R' failed
The error most likely occurred in:
> ### Name: pool_comparisons
> ### Title: Pool contrasts and comparisons from 'test_predictions()'
> ### Aliases: pool_comparisons
>
> ### ** Examples
>
> ## Don't show:
> if (require("mice")) (if (getRversion() >= "3.4") withAutoprint else force)({ # examplesIf
+ ## End(Don't show)
+ data("nhanes2", package = "mice")
+ imp <- mice::mice(nhanes2, printFlag = FALSE)
+ comparisons <- lapply(1:5, function(i) {
+ m <- lm(bmi ~ age + hyp + chl, data = mice::complete(imp, action = i))
+ test_predictions(m, "age")
+ })
+ pool_comparisons(comparisons)
+ ## Don't show:
+ }) # examplesIf
Loading required package: mice
Attaching package: 'mice'
The following object is masked from 'package:stats':
filter
The following objects are masked from 'package:base':
cbind, rbind
> data("nhanes2", package = "mice")
> imp <- mice::mice(nhanes2, printFlag = FALSE)
> comparisons <- lapply(1:5, function(i) {
+ m <- lm(bmi ~ age + hyp + chl, data = mice::complete(imp, action = i))
+ test_predictions(m, "age")
+ })
Error: Assertion failed. One of the following must apply:
* checkmate::check_character(hypothesis): Must comply to pattern '='
* checkmate::check_numeric(hypothesis): Must be of type 'numeric', not
* 'character'
* checkmate::check_formula(hypothesis): Must be a formula, not
* character
* checkmate::check_matrix(hypothesis): Must be of type 'matrix', not
* 'character'
* checkmate::check_function(hypothesis): Must be a function, not
* 'character'
* checkmate::check_null(hypothesis): Must be NULL
Execution halted
Flavor: r-oldrel-windows-x86_64
Version: 2.1.0
Check: tests
Result: ERROR
Running 'testthat.R' [194s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(ggeffects)
> test_check("ggeffects")
(Intercept) tensionM tensionH
36.38889 -10.00000 -14.72222
You are calculating adjusted predictions on the population-level (i.e.
`type = "fixed"`) for a *generalized* linear mixed model.
This may produce biased estimates due to Jensen's inequality. Consider
setting `bias_correction = TRUE` to correct for this bias.
See also the documentation of the `bias_correction` argument.
Not all rows are shown in the output. Use `print(..., n = Inf)` to show
all rows.
Not all rows are shown in the output. Use `print(..., n = Inf)` to show
all rows.
Running model...
Done!
Some of the focal terms are of type `character`. This may lead to
unexpected results. It is recommended to convert these variables to
factors before fitting the model.
The following variables are of type character: `brand`
Some of the focal terms are of type `character`. This may lead to
unexpected results. It is recommended to convert these variables to
factors before fitting the model.
The following variables are of type character: `brand`
Some of the focal terms are of type `character`. This may lead to
unexpected results. It is recommended to convert these variables to
factors before fitting the model.
The following variables are of type character: `brand`
Iteration 1 - deviance = 39.74973 - criterion = 0.8590917
Iteration 2 - deviance = 10.50328 - criterion = 2.758244
Iteration 3 - deviance = 9.231325 - criterion = 0.1363107
Iteration 4 - deviance = 9.227742 - criterion = 0.0003840654
Iteration 5 - deviance = 9.227742 - criterion = 3.446463e-09
converged
Data were 'prettified'. Consider using `terms="price [all]"` to get
smooth plots.
NOTE: Results may be misleading due to involvement in interactions
NOTE: Results may be misleading due to involvement in interactions
# weights: 16 (9 variable)
initial value 1149.238025
iter 10 value 1015.404427
final value 1013.443395
converged
Re-fitting to get Hessian
Re-fitting to get Hessian
Re-fitting to get Hessian
Model contains splines or polynomial terms. Consider using `terms="mined
[all]"` to get smooth plots. See also package-vignette 'Adjusted
Predictions at Specific Values'.
Model contains splines or polynomial terms. Consider using `terms="cover
[all]"` to get smooth plots. See also package-vignette 'Adjusted
Predictions at Specific Values'.
Model contains splines or polynomial terms. Consider using `terms="mined
[all]"` to get smooth plots. See also package-vignette 'Adjusted
Predictions at Specific Values'.
Model contains splines or polynomial terms. Consider using `terms="cover
[all]"` to get smooth plots. See also package-vignette 'Adjusted
Predictions at Specific Values'.
Can't compute adjusted predictions, `effects::Effect()` returned an error.
Reason: Invalid operation on a survival time
You may try `ggpredict()` or `ggemmeans()`.
Can't compute adjusted predictions, `effects::Effect()` returned an error.
Reason: non-conformable arguments
You may try `ggpredict()` or `ggemmeans()`.
[ FAIL 31 | WARN 0 | SKIP 70 | PASS 565 ]
══ Skipped tests (70) ══════════════════════════════════════════════════════════
• On CRAN (68): 'test-MCMCglmm.R:1:1', 'test-MixMod.R:1:1',
'test-averaging.R:1:1', 'test-avg_predictions.R:1:1',
'test-backtransform_response.R:1:1', 'test-bias_correction.R:1:1',
'test-brms-categ-cum.R:1:1', 'test-brms-monotonic.R:1:1',
'test-brms-ppd.R:1:1', 'test-brms-trial.R:1:1', 'test-clean_vars.R:1:1',
'test-clm.R:1:1', 'test-clm2.R:1:1', 'test-clmm.R:1:1',
'test-condition.R:1:1', 'test-correct_se_sorting.R:1:1',
'test-decimals.R:1:1', 'test-fixest.R:1:1', 'test-focal_only_random.R:1:1',
'test-format.R:1:1', 'test-gamlss.R:1:1', 'test-gamm4.R:1:1',
'test-glmer.R:2:1', 'test-glmmTMB.R:1:1', 'test-interval_re.R:1:1',
'test-ivreg.R:1:1', 'test-johnson_neyman.R:1:1',
'test-johnson_neyman_numcat.R:1:1', 'test-list_terms.R:36:3',
'test-lmer.R:1:1', 'test-mgcv.R:1:1', 'test-plot-from-vignettes.R:5:1',
'test-plot-ordinal-latent.R:1:1', 'test-plot-show_data.R:1:1',
'test-plot-survival.R:2:1', 'test-plot.R:1:1', 'test-polr.R:21:7',
'test-polr.R:60:7', 'test-pool_comparisons.R:1:1', 'test-print.R:1:1',
'test-print_digits.R:1:1', 'test-print_md.R:1:1', 'test-print_subsets.R:7:3',
'test-print_subsets.R:12:3', 'test-print_test_predictions.R:24:3',
'test-print_test_predictions.R:40:3', 'test-print_test_predictions.R:44:3',
'test-print_test_predictions.R:53:3', 'test-print_test_predictions.R:65:3',
'test-print_zero_inflation.R:1:1', 'test-resid_over_grid.R:33:5',
'test-rstanarm-ppd.R:1:1', 'test-rstanarm.R:1:1', 'test-sdmTMB.R:1:1',
'test-simulate.R:1:1', 'test-test_predictions-formula.R:1:1',
'test-test_predictions-margin.R:1:1', 'test-test_predictions-mixed.R:1:1',
'test-test_predictions_emmeans.R:133:3',
'test-test_predictions_emmeans.R:168:3',
'test-test_predictions_ggeffects.R:140:3',
'test-test_predictions_ggeffects.R:184:3',
'test-test_predictions_ggeffects.R:193:3',
'test-test_predictions_ggeffects.R:236:5', 'test-vcov.R:1:1',
'test-vglm.R:1:1', 'test-zeroinfl.R:27:3', 'test-zi_prob.R:1:1'
• empty test (2): 'test-polr.R:136:5', 'test-polr.R:142:5'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-betareg.R:51:3'): ggpredict ────────────────────────────────────
Error: Assertion failed. One of the following must apply:
* checkmate::check_character(hypothesis): Must comply to pattern '='
* checkmate::check_numeric(hypothesis): Must be of type 'numeric', not
* 'character'
* checkmate::check_formula(hypothesis): Must be a formula, not
* character
* checkmate::check_matrix(hypothesis): Must be of type 'matrix', not
* 'character'
* checkmate::check_function(hypothesis): Must be a function, not
* 'character'
* checkmate::check_null(hypothesis): Must be NULL
Backtrace:
▆
1. ├─ggeffects::test_predictions(p) at test-betareg.R:51:3
2. └─ggeffects:::test_predictions.ggeffects(p)
3. ├─base::do.call(test_predictions.default, c(my_args, dot_args))
4. └─ggeffects (local) `<fn>`(...)
5. └─ggeffects:::.call_me(fun, fun_args, dot_args, include_random)
6. ├─base::do.call(get(fun, asNamespace("marginaleffects")), all_args)
7. └─marginaleffects (local) `<fn>`(...)
8. └─marginaleffects:::sanitize_hypothesis(hypothesis, ...)
9. └─checkmate::assert(...)
10. └─checkmate:::mstopOrPush(res = msgs, v_name = .var.name, collection = add)
11. └─checkmate:::mstop("Assertion failed. %s", res)
── Error ('test-brglm.R:23:3'): ggpredict brglm ───────────────────────────────
Error: Assertion failed. One of the following must apply:
* checkmate::check_character(hypothesis): Must comply to pattern '='
* checkmate::check_numeric(hypothesis): Must be of type 'numeric', not
* 'character'
* checkmate::check_formula(hypothesis): Must be a formula, not
* character
* checkmate::check_matrix(hypothesis): Must be of type 'matrix', not
* 'character'
* checkmate::check_function(hypothesis): Must be a function, not
* 'character'
* checkmate::check_null(hypothesis): Must be NULL
Backtrace:
▆
1. ├─ggeffects::test_predictions(out) at test-brglm.R:23:3
2. └─ggeffects:::test_predictions.ggeffects(out)
3. ├─base::do.call(test_predictions.default, c(my_args, dot_args))
4. └─ggeffects (local) `<fn>`(...)
5. └─ggeffects:::.call_me(fun, fun_args, dot_args, include_random)
6. ├─base::do.call(get(fun, asNamespace("marginaleffects")), all_args)
7. └─marginaleffects (local) `<fn>`(...)
8. └─marginaleffects:::sanitize_hypothesis(hypothesis, ...)
9. └─checkmate::assert(...)
10. └─checkmate:::mstopOrPush(res = msgs, v_name = .var.name, collection = add)
11. └─checkmate:::mstop("Assertion failed. %s", res)
── Error ('test-ggaverage.R:25:3'): ggaverage works with condition ─────────────
Error: Assertion failed. One of the following must apply:
* checkmate::check_character(hypothesis): Must comply to pattern '='
* checkmate::check_numeric(hypothesis): Must be of type 'numeric', not
* 'character'
* checkmate::check_formula(hypothesis): Must be a formula, not
* character
* checkmate::check_matrix(hypothesis): Must be of type 'matrix', not
* 'character'
* checkmate::check_function(hypothesis): Must be a function, not
* 'character'
* checkmate::check_null(hypothesis): Must be NULL
Backtrace:
▆
1. ├─ggeffects::test_predictions(out1) at test-ggaverage.R:25:3
2. └─ggeffects:::test_predictions.ggeffects(out1)
3. ├─base::do.call(test_predictions.default, c(my_args, dot_args))
4. └─ggeffects (local) `<fn>`(...)
5. └─ggeffects:::.call_me(fun, fun_args, dot_args, include_random)
6. ├─base::do.call(get(fun, asNamespace("marginaleffects")), all_args)
7. └─marginaleffects (local) `<fn>`(...)
8. └─marginaleffects:::sanitize_hypothesis(hypothesis, ...)
9. └─checkmate::assert(...)
10. └─checkmate:::mstopOrPush(res = msgs, v_name = .var.name, collection = add)
11. └─checkmate:::mstop("Assertion failed. %s", res)
── Error ('test-print_test_predictions-ordinal.R:13:3'): print hypothesis_test ordinal outcome ──
Error: Assertion failed. One of the following must apply:
* checkmate::check_character(hypothesis): Must comply to pattern '='
* checkmate::check_numeric(hypothesis): Must be of type 'numeric', not
* 'character'
* checkmate::check_formula(hypothesis): Must be a formula, not
* character
* checkmate::check_matrix(hypothesis): Must be of type 'matrix', not
* 'character'
* checkmate::check_function(hypothesis): Must be a function, not
* 'character'
* checkmate::check_null(hypothesis): Must be NULL
Backtrace:
▆
1. ├─base::suppressMessages(...) at test-print_test_predictions-ordinal.R:13:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressWarnings(...)
4. │ └─base::withCallingHandlers(...)
5. ├─ggeffects::hypothesis_test(ggpredict(m_polr, "Type"), scale = "probs")
6. └─ggeffects:::test_predictions.ggeffects(...)
7. ├─base::do.call(test_predictions.default, c(my_args, dot_args))
8. └─ggeffects (local) `<fn>`(...)
9. └─ggeffects:::.call_me(fun, fun_args, dot_args, include_random)
10. ├─base::do.call(get(fun, asNamespace("marginaleffects")), all_args)
11. └─marginaleffects (local) `<fn>`(...)
12. └─marginaleffects:::sanitize_hypothesis(hypothesis, ...)
13. └─checkmate::assert(...)
14. └─checkmate:::mstopOrPush(res = msgs, v_name = .var.name, collection = add)
15. └─checkmate:::mstop("Assertion failed. %s", res)
── Error ('test-print_test_predictions.R:19:3'): print hypothesis_test simple contrast link scale ──
Error: Assertion failed. One of the following must apply:
* checkmate::check_character(hypothesis): Must comply to pattern '='
* checkmate::check_numeric(hypothesis): Must be of type 'numeric', not
* 'character'
* checkmate::check_formula(hypothesis): Must be a formula, not
* character
* checkmate::check_matrix(hypothesis): Must be of type 'matrix', not
* 'character'
* checkmate::check_function(hypothesis): Must be a function, not
* 'character'
* checkmate::check_null(hypothesis): Must be NULL
Backtrace:
▆
1. ├─ggeffects::hypothesis_test(m, "var_binom", scale = "link") at test-print_test_predictions.R:19:3
2. └─ggeffects:::test_predictions.default(m, "var_binom", scale = "link")
3. └─ggeffects:::.call_me(fun, fun_args, dot_args, include_random)
4. ├─base::do.call(get(fun, asNamespace("marginaleffects")), all_args)
5. └─marginaleffects (local) `<fn>`(...)
6. └─marginaleffects:::sanitize_hypothesis(hypothesis, ...)
7. └─checkmate::assert(...)
8. └─checkmate:::mstopOrPush(res = msgs, v_name = .var.name, collection = add)
9. └─checkmate:::mstop("Assertion failed. %s", res)
── Error ('test-print_test_predictions.R:27:3'): print hypothesis_test simple contrast exp scale ──
Error: Assertion failed. One of the following must apply:
* checkmate::check_character(hypothesis): Must comply to pattern '='
* checkmate::check_numeric(hypothesis): Must be of type 'numeric', not
* 'character'
* checkmate::check_formula(hypothesis): Must be a formula, not
* character
* checkmate::check_matrix(hypothesis): Must be of type 'matrix', not
* 'character'
* checkmate::check_function(hypothesis): Must be a function, not
* 'character'
* checkmate::check_null(hypothesis): Must be NULL
Backtrace:
▆
1. ├─ggeffects::hypothesis_test(m, "var_binom", scale = "exp") at test-print_test_predictions.R:27:3
2. └─ggeffects:::test_predictions.default(m, "var_binom", scale = "exp")
3. └─ggeffects:::.call_me(fun, fun_args, dot_args, include_random)
4. ├─base::do.call(get(fun, asNamespace("marginaleffects")), all_args)
5. └─marginaleffects (local) `<fn>`(...)
6. └─marginaleffects:::sanitize_hypothesis(hypothesis, ...)
7. └─checkmate::assert(...)
8. └─checkmate:::mstopOrPush(res = msgs, v_name = .var.name, collection = add)
9. └─checkmate:::mstop("Assertion failed. %s", res)
── Error ('test-print_test_predictions.R:31:3'): print hypothesis_test simple contrast odds ratio scale ──
Error: Assertion failed. One of the following must apply:
* checkmate::check_character(hypothesis): Must comply to pattern '='
* checkmate::check_numeric(hypothesis): Must be of type 'numeric', not
* 'character'
* checkmate::check_formula(hypothesis): Must be a formula, not
* character
* checkmate::check_matrix(hypothesis): Must be of type 'matrix', not
* 'character'
* checkmate::check_function(hypothesis): Must be a function, not
* 'character'
* checkmate::check_null(hypothesis): Must be NULL
Backtrace:
▆
1. ├─ggeffects::hypothesis_test(m, "var_binom", scale = "oddsratios") at test-print_test_predictions.R:31:3
2. └─ggeffects:::test_predictions.default(m, "var_binom", scale = "oddsratios")
3. └─ggeffects:::.call_me(fun, fun_args, dot_args, include_random)
4. ├─base::do.call(get(fun, asNamespace("marginaleffects")), all_args)
5. └─marginaleffects (local) `<fn>`(...)
6. └─marginaleffects:::sanitize_hypothesis(hypothesis, ...)
7. └─checkmate::assert(...)
8. └─checkmate:::mstopOrPush(res = msgs, v_name = .var.name, collection = add)
9. └─checkmate:::mstop("Assertion failed. %s", res)
── Error ('test-print_test_predictions.R:35:3'): print hypothesis_test simple contrast response scale ──
Error: Assertion failed. One of the following must apply:
* checkmate::check_character(hypothesis): Must comply to pattern '='
* checkmate::check_numeric(hypothesis): Must be of type 'numeric', not
* 'character'
* checkmate::check_formula(hypothesis): Must be a formula, not
* character
* checkmate::check_matrix(hypothesis): Must be of type 'matrix', not
* 'character'
* checkmate::check_function(hypothesis): Must be a function, not
* 'character'
* checkmate::check_null(hypothesis): Must be NULL
Backtrace:
▆
1. ├─ggeffects::hypothesis_test(m, "var_binom", scale = "response") at test-print_test_predictions.R:35:3
2. └─ggeffects:::test_predictions.default(m, "var_binom", scale = "response")
3. └─ggeffects:::.call_me(fun, fun_args, dot_args, include_random)
4. ├─base::do.call(get(fun, asNamespace("marginaleffects")), all_args)
5. └─marginaleffects (local) `<fn>`(...)
6. └─marginaleffects:::sanitize_hypothesis(hypothesis, ...)
7. └─checkmate::assert(...)
8. └─checkmate:::mstopOrPush(res = msgs, v_name = .var.name, collection = add)
9. └─checkmate:::mstop("Assertion failed. %s", res)
── Error ('test-print_test_predictions.R:48:3'): print hypothesis_test contrasts link scale ──
Error: Assertion failed. One of the following must apply:
* checkmate::check_character(hypothesis): Must comply to pattern '='
* checkmate::check_numeric(hypothesis): Must be of type 'numeric', not
* 'character'
* checkmate::check_formula(hypothesis): Must be a formula, not
* character
* checkmate::check_matrix(hypothesis): Must be of type 'matrix', not
* 'character'
* checkmate::check_function(hypothesis): Must be a function, not
* 'character'
* checkmate::check_null(hypothesis): Must be NULL
Backtrace:
▆
1. ├─ggeffects::hypothesis_test(m, c("var_binom", "var_cont"), scale = "link") at test-print_test_predictions.R:48:3
2. └─ggeffects:::test_predictions.default(...)
3. └─ggeffects:::.call_me(fun, fun_args, dot_args, include_random)
4. ├─base::do.call(get(fun, asNamespace("marginaleffects")), all_args)
5. └─marginaleffects (local) `<fn>`(...)
6. └─marginaleffects:::sanitize_hypothesis(hypothesis, ...)
7. └─checkmate::assert(...)
8. └─checkmate:::mstopOrPush(res = msgs, v_name = .var.name, collection = add)
9. └─checkmate:::mstop("Assertion failed. %s", res)
── Error ('test-print_test_predictions.R:56:3'): print hypothesis_test contrasts exp scale ──
Error: Assertion failed. One of the following must apply:
* checkmate::check_character(hypothesis): Must comply to pattern '='
* checkmate::check_numeric(hypothesis): Must be of type 'numeric', not
* 'character'
* checkmate::check_formula(hypothesis): Must be a formula, not
* character
* checkmate::check_matrix(hypothesis): Must be of type 'matrix', not
* 'character'
* checkmate::check_function(hypothesis): Must be a function, not
* 'character'
* checkmate::check_null(hypothesis): Must be NULL
Backtrace:
▆
1. ├─ggeffects::hypothesis_test(m, c("var_binom", "var_cont"), scale = "exp") at test-print_test_predictions.R:56:3
2. └─ggeffects:::test_predictions.default(...)
3. └─ggeffects:::.call_me(fun, fun_args, dot_args, include_random)
4. ├─base::do.call(get(fun, asNamespace("marginaleffects")), all_args)
5. └─marginaleffects (local) `<fn>`(...)
6. └─marginaleffects:::sanitize_hypothesis(hypothesis, ...)
7. └─checkmate::assert(...)
8. └─checkmate:::mstopOrPush(res = msgs, v_name = .var.name, collection = add)
9. └─checkmate:::mstop("Assertion failed. %s", res)
── Error ('test-print_test_predictions.R:60:3'): print hypothesis_test contrasts response scale ──
Error: Assertion failed. One of the following must apply:
* checkmate::check_character(hypothesis): Must comply to pattern '='
* checkmate::check_numeric(hypothesis): Must be of type 'numeric', not
* 'character'
* checkmate::check_formula(hypothesis): Must be a formula, not
* character
* checkmate::check_matrix(hypothesis): Must be of type 'matrix', not
* 'character'
* checkmate::check_function(hypothesis): Must be a function, not
* 'character'
* checkmate::check_null(hypothesis): Must be NULL
Backtrace:
▆
1. ├─ggeffects::hypothesis_test(m, c("var_binom", "var_cont"), scale = "response") at test-print_test_predictions.R:60:3
2. └─ggeffects:::test_predictions.default(...)
3. └─ggeffects:::.call_me(fun, fun_args, dot_args, include_random)
4. ├─base::do.call(get(fun, asNamespace("marginaleffects")), all_args)
5. └─marginaleffects (local) `<fn>`(...)
6. └─marginaleffects:::sanitize_hypothesis(hypothesis, ...)
7. └─checkmate::assert(...)
8. └─checkmate:::mstopOrPush(res = msgs, v_name = .var.name, collection = add)
9. └─checkmate:::mstop("Assertion failed. %s", res)
── Error ('test-print_test_predictions.R:74:3'): print hypothesis_test many rows ──
Error in `.tp_label_hypothesis_categorical(.comparisons, need_average_predictions = need_average_predictions,
margin = margin, object = object, by_variables = by_variables,
datagrid = datagrid, df = df, ci_level = ci_level, dot_args = dot_args,
include_random = include_random, focal = focal, test = test)`: object 'hypothesis_label' not found
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-print_test_predictions.R:74:3
2. │ └─base::withCallingHandlers(...)
3. ├─ggeffects::hypothesis_test(...)
4. └─ggeffects:::test_predictions.default(...)
5. └─ggeffects:::.tp_label_hypothesis_categorical(...)
── Error ('test-print_test_predictions.R:170:3'): print hypothesis_test comma and dash levels ──
Error: Assertion failed. One of the following must apply:
* checkmate::check_character(hypothesis): Must comply to pattern '='
* checkmate::check_numeric(hypothesis): Must be of type 'numeric', not
* 'character'
* checkmate::check_formula(hypothesis): Must be a formula, not
* character
* checkmate::check_matrix(hypothesis): Must be of type 'matrix', not
* 'character'
* checkmate::check_function(hypothesis): Must be a function, not
* 'character'
* checkmate::check_null(hypothesis): Must be NULL
Backtrace:
▆
1. ├─ggeffects::hypothesis_test(m, c("f1", "f2")) at test-print_test_predictions.R:170:3
2. └─ggeffects:::test_predictions.default(m, c("f1", "f2"))
3. └─ggeffects:::.call_me(fun, fun_args, dot_args, include_random)
4. ├─base::suppressMessages(...)
5. │ └─base::withCallingHandlers(...)
6. ├─base::suppressWarnings(...)
7. │ └─base::withCallingHandlers(...)
8. ├─base::do.call(get(fun, asNamespace("marginaleffects")), all_args)
9. └─marginaleffects (local) `<fn>`(...)
10. └─marginaleffects::predictions(...)
11. └─marginaleffects:::sanitize_hypothesis(hypothesis, ...)
12. └─checkmate::assert(...)
13. └─checkmate:::mstopOrPush(res = msgs, v_name = .var.name, collection = add)
14. └─checkmate:::mstop("Assertion failed. %s", res)
── Error ('test-print_test_predictions.R:230:3'): print hypothesis_test collapse levels ──
Error: Assertion failed. One of the following must apply:
* checkmate::check_character(hypothesis): Must comply to pattern '='
* checkmate::check_numeric(hypothesis): Must be of type 'numeric', not
* 'character'
* checkmate::check_formula(hypothesis): Must be a formula, not
* character
* checkmate::check_matrix(hypothesis): Must be of type 'matrix', not
* 'character'
* checkmate::check_function(hypothesis): Must be a function, not
* 'character'
* checkmate::check_null(hypothesis): Must be NULL
Backtrace:
▆
1. ├─ggeffects::hypothesis_test(m, c("c172code", "c161sex"), collapse_levels = TRUE) at test-print_test_predictions.R:230:3
2. └─ggeffects:::test_predictions.default(...)
3. └─ggeffects:::.call_me(fun, fun_args, dot_args, include_random)
4. ├─base::do.call(get(fun, asNamespace("marginaleffects")), all_args)
5. └─marginaleffects (local) `<fn>`(...)
6. └─marginaleffects:::sanitize_hypothesis(hypothesis, ...)
7. └─checkmate::assert(...)
8. └─checkmate:::mstopOrPush(res = msgs, v_name = .var.name, collection = add)
9. └─checkmate:::mstop("Assertion failed. %s", res)
── Error ('test-print_test_predictions.R:238:3'): hypothesis_test, ci-level ────
Error: Assertion failed. One of the following must apply:
* checkmate::check_character(hypothesis): Must comply to pattern '='
* checkmate::check_numeric(hypothesis): Must be of type 'numeric', not
* 'character'
* checkmate::check_formula(hypothesis): Must be a formula, not
* character
* checkmate::check_matrix(hypothesis): Must be of type 'matrix', not
* 'character'
* checkmate::check_function(hypothesis): Must be a function, not
* 'character'
* checkmate::check_null(hypothesis): Must be NULL
Backtrace:
▆
1. ├─ggeffects::hypothesis_test(m, "Species") at test-print_test_predictions.R:238:3
2. └─ggeffects:::test_predictions.default(m, "Species")
3. └─ggeffects:::.call_me(fun, fun_args, dot_args, include_random)
4. ├─base::do.call(get(fun, asNamespace("marginaleffects")), all_args)
5. └─marginaleffects (local) `<fn>`(...)
6. └─marginaleffects:::sanitize_hypothesis(hypothesis, ...)
7. └─checkmate::assert(...)
8. └─checkmate:::mstopOrPush(res = msgs, v_name = .var.name, collection = add)
9. └─checkmate:::mstop("Assertion failed. %s", res)
── Error ('test-print_test_predictions.R:256:3'): glmmTMB, orderedbeta ─────────
Error: Assertion failed. One of the following must apply:
* checkmate::check_character(hypothesis): Must comply to pattern '='
* checkmate::check_numeric(hypothesis): Must be of type 'numeric', not
* 'character'
* checkmate::check_formula(hypothesis): Must be a formula, not
* character
* checkmate::check_matrix(hypothesis): Must be of type 'matrix', not
* 'character'
* checkmate::check_function(hypothesis): Must be a function, not
* 'character'
* checkmate::check_null(hypothesis): Must be NULL
Backtrace:
▆
1. └─testthat::expect_snapshot(print(test_predictions(out2))) at test-print_test_predictions.R:256:3
2. └─rlang::cnd_signal(state$error)
── Error ('test-print_test_predictions.R:268:5'): print hypothesis_test collapse CI ──
Error: Assertion failed. One of the following must apply:
* checkmate::check_character(hypothesis): Must comply to pattern '='
* checkmate::check_numeric(hypothesis): Must be of type 'numeric', not
* 'character'
* checkmate::check_formula(hypothesis): Must be a formula, not
* character
* checkmate::check_matrix(hypothesis): Must be of type 'matrix', not
* 'character'
* checkmate::check_function(hypothesis): Must be a function, not
* 'character'
* checkmate::check_null(hypothesis): Must be NULL
Backtrace:
▆
1. ├─ggeffects::hypothesis_test(pr) at test-print_test_predictions.R:268:5
2. └─ggeffects:::test_predictions.ggeffects(pr)
3. ├─base::do.call(test_predictions.default, c(my_args, dot_args))
4. └─ggeffects (local) `<fn>`(...)
5. └─ggeffects:::.call_me(fun, fun_args, dot_args, include_random)
6. ├─base::do.call(get(fun, asNamespace("marginaleffects")), all_args)
7. └─marginaleffects (local) `<fn>`(...)
8. └─marginaleffects:::sanitize_hypothesis(hypothesis, ...)
9. └─checkmate::assert(...)
10. └─checkmate:::mstopOrPush(res = msgs, v_name = .var.name, collection = add)
11. └─checkmate:::mstop("Assertion failed. %s", res)
── Error ('test-test_predictions.R:30:3'): test_predictions, categorical, pairwise ──
Error: Assertion failed. One of the following must apply:
* checkmate::check_character(hypothesis): Must comply to pattern '='
* checkmate::check_numeric(hypothesis): Must be of type 'numeric', not
* 'character'
* checkmate::check_formula(hypothesis): Must be a formula, not
* character
* checkmate::check_matrix(hypothesis): Must be of type 'matrix', not
* 'character'
* checkmate::check_function(hypothesis): Must be a function, not
* 'character'
* checkmate::check_null(hypothesis): Must be NULL
Backtrace:
▆
1. ├─ggeffects::test_predictions(model1, c("groups", "episode")) at test-test_predictions.R:30:3
2. └─ggeffects:::test_predictions.default(model1, c("groups", "episode"))
3. └─ggeffects:::.call_me(fun, fun_args, dot_args, include_random)
4. ├─base::do.call(get(fun, asNamespace("marginaleffects")), all_args)
5. └─marginaleffects (local) `<fn>`(...)
6. └─marginaleffects:::sanitize_hypothesis(hypothesis, ...)
7. └─checkmate::assert(...)
8. └─checkmate:::mstopOrPush(res = msgs, v_name = .var.name, collection = add)
9. └─checkmate:::mstop("Assertion failed. %s", res)
── Error ('test-test_predictions.R:63:3'): test_predictions, categorical, pairwise, p_adjust ──
Error: Assertion failed. One of the following must apply:
* checkmate::check_character(hypothesis): Must comply to pattern '='
* checkmate::check_numeric(hypothesis): Must be of type 'numeric', not
* 'character'
* checkmate::check_formula(hypothesis): Must be a formula, not
* character
* checkmate::check_matrix(hypothesis): Must be of type 'matrix', not
* 'character'
* checkmate::check_function(hypothesis): Must be a function, not
* 'character'
* checkmate::check_null(hypothesis): Must be NULL
Backtrace:
▆
1. ├─ggeffects::test_predictions(model1, c("groups", "episode")) at test-test_predictions.R:63:3
2. └─ggeffects:::test_predictions.default(model1, c("groups", "episode"))
3. └─ggeffects:::.call_me(fun, fun_args, dot_args, include_random)
4. ├─base::do.call(get(fun, asNamespace("marginaleffects")), all_args)
5. └─marginaleffects (local) `<fn>`(...)
6. └─marginaleffects:::sanitize_hypothesis(hypothesis, ...)
7. └─checkmate::assert(...)
8. └─checkmate:::mstopOrPush(res = msgs, v_name = .var.name, collection = add)
9. └─checkmate:::mstop("Assertion failed. %s", res)
── Error ('test-test_predictions.R:107:3'): test_predictions, interaction ──────
Error: Assertion failed. One of the following must apply:
* checkmate::check_character(hypothesis): Must comply to pattern '='
* checkmate::check_numeric(hypothesis): Must be of type 'numeric', not
* 'character'
* checkmate::check_formula(hypothesis): Must be a formula, not
* character
* checkmate::check_matrix(hypothesis): Must be of type 'matrix', not
* 'character'
* checkmate::check_function(hypothesis): Must be a function, not
* 'character'
* checkmate::check_null(hypothesis): Must be NULL
Backtrace:
▆
1. ├─ggeffects::test_predictions(model2, c("Sepal.Length", "Species")) at test-test_predictions.R:107:3
2. └─ggeffects:::test_predictions.default(...)
3. └─ggeffects:::.call_me("slopes", fun_args, dot_args, include_random)
4. ├─base::do.call(get(fun, asNamespace("marginaleffects")), all_args)
5. └─marginaleffects (local) `<fn>`(...)
6. └─marginaleffects::comparisons(...)
7. └─marginaleffects:::sanitize_hypothesis(hypothesis, ...)
8. └─checkmate::assert(...)
9. └─checkmate:::mstopOrPush(res = msgs, v_name = .var.name, collection = add)
10. └─checkmate:::mstop("Assertion failed. %s", res)
── Error ('test-test_predictions.R:125:3'): test_predictions, by-argument ──────
Error: Assertion failed. One of the following must apply:
* checkmate::check_character(hypothesis): Must comply to pattern '='
* checkmate::check_numeric(hypothesis): Must be of type 'numeric', not
* 'character'
* checkmate::check_formula(hypothesis): Must be a formula, not
* character
* checkmate::check_matrix(hypothesis): Must be of type 'matrix', not
* 'character'
* checkmate::check_function(hypothesis): Must be a function, not
* 'character'
* checkmate::check_null(hypothesis): Must be NULL
Backtrace:
▆
1. ├─ggeffects::test_predictions(prfilter, by = "c161sex") at test-test_predictions.R:125:3
2. └─ggeffects:::test_predictions.ggeffects(prfilter, by = "c161sex")
3. ├─base::do.call(test_predictions.default, c(my_args, dot_args))
4. └─ggeffects (local) `<fn>`(...)
5. └─ggeffects:::.call_me(fun, fun_args, dot_args, include_random)
6. ├─base::do.call(get(fun, asNamespace("marginaleffects")), all_args)
7. └─marginaleffects (local) `<fn>`(...)
8. └─marginaleffects:::sanitize_hypothesis(hypothesis, ...)
9. └─checkmate::assert(...)
10. └─checkmate:::mstopOrPush(res = msgs, v_name = .var.name, collection = add)
11. └─checkmate:::mstop("Assertion failed. %s", res)
── Error ('test-test_predictions.R:155:3'): test_predictions, categorical, pairwise ──
Error: Assertion failed. One of the following must apply:
* checkmate::check_character(hypothesis): Must comply to pattern '='
* checkmate::check_numeric(hypothesis): Must be of type 'numeric', not
* 'character'
* checkmate::check_formula(hypothesis): Must be a formula, not
* character
* checkmate::check_matrix(hypothesis): Must be of type 'matrix', not
* 'character'
* checkmate::check_function(hypothesis): Must be a function, not
* 'character'
* checkmate::check_null(hypothesis): Must be NULL
Backtrace:
▆
1. ├─ggeffects::test_predictions(model3, c("groups", "episode")) at test-test_predictions.R:155:3
2. └─ggeffects:::test_predictions.default(model3, c("groups", "episode"))
3. └─ggeffects:::.call_me(fun, fun_args, dot_args, include_random)
4. ├─base::suppressMessages(...)
5. │ └─base::withCallingHandlers(...)
6. ├─base::suppressWarnings(...)
7. │ └─base::withCallingHandlers(...)
8. ├─base::do.call(get(fun, asNamespace("marginaleffects")), all_args)
9. └─marginaleffects (local) `<fn>`(...)
10. └─marginaleffects::predictions(...)
11. └─marginaleffects:::sanitize_hypothesis(hypothesis, ...)
12. └─checkmate::assert(...)
13. └─checkmate:::mstopOrPush(res = msgs, v_name = .var.name, collection = add)
14. └─checkmate:::mstop("Assertion failed. %s", res)
── Error ('test-test_predictions.R:221:3'): test_predictions, categorical, one focal, pairwise ──
Error: Assertion failed. One of the following must apply:
* checkmate::check_character(hypothesis): Must comply to pattern '='
* checkmate::check_numeric(hypothesis): Must be of type 'numeric', not
* 'character'
* checkmate::check_formula(hypothesis): Must be a formula, not
* character
* checkmate::check_matrix(hypothesis): Must be of type 'matrix', not
* 'character'
* checkmate::check_function(hypothesis): Must be a function, not
* 'character'
* checkmate::check_null(hypothesis): Must be NULL
Backtrace:
▆
1. ├─ggeffects::test_predictions(m, "Sex") at test-test_predictions.R:221:3
2. └─ggeffects:::test_predictions.default(m, "Sex")
3. └─ggeffects:::.call_me(fun, fun_args, dot_args, include_random)
4. ├─base::suppressMessages(...)
5. │ └─base::withCallingHandlers(...)
6. ├─base::suppressWarnings(...)
7. │ └─base::withCallingHandlers(...)
8. ├─base::do.call(get(fun, asNamespace("marginaleffects")), all_args)
9. └─marginaleffects (local) `<fn>`(...)
10. └─marginaleffects::predictions(...)
11. └─marginaleffects:::sanitize_hypothesis(hypothesis, ...)
12. └─checkmate::assert(...)
13. └─checkmate:::mstopOrPush(res = msgs, v_name = .var.name, collection = add)
14. └─checkmate:::mstop("Assertion failed. %s", res)
── Error ('test-test_predictions.R:244:3'): test_predictions, masked chars in levels ──
Error: Assertion failed. One of the following must apply:
* checkmate::check_character(hypothesis): Must comply to pattern '='
* checkmate::check_numeric(hypothesis): Must be of type 'numeric', not
* 'character'
* checkmate::check_formula(hypothesis): Must be a formula, not
* character
* checkmate::check_matrix(hypothesis): Must be of type 'matrix', not
* 'character'
* checkmate::check_function(hypothesis): Must be a function, not
* 'character'
* checkmate::check_null(hypothesis): Must be NULL
Backtrace:
▆
1. ├─ggeffects::test_predictions(model, c("groups", "sex")) at test-test_predictions.R:244:3
2. └─ggeffects:::test_predictions.default(model, c("groups", "sex"))
3. └─ggeffects:::.call_me(fun, fun_args, dot_args, include_random)
4. ├─base::suppressMessages(...)
5. │ └─base::withCallingHandlers(...)
6. ├─base::suppressWarnings(...)
7. │ └─base::withCallingHandlers(...)
8. ├─base::do.call(get(fun, asNamespace("marginaleffects")), all_args)
9. └─marginaleffects (local) `<fn>`(...)
10. └─marginaleffects::predictions(...)
11. └─marginaleffects:::sanitize_hypothesis(hypothesis, ...)
12. └─checkmate::assert(...)
13. └─checkmate:::mstopOrPush(res = msgs, v_name = .var.name, collection = add)
14. └─checkmate:::mstop("Assertion failed. %s", res)
── Error ('test-test_predictions.R:268:3'): test_predictions, don't drop single columns ──
Error: Assertion failed. One of the following must apply:
* checkmate::check_character(hypothesis): Must comply to pattern '='
* checkmate::check_numeric(hypothesis): Must be of type 'numeric', not
* 'character'
* checkmate::check_formula(hypothesis): Must be a formula, not
* character
* checkmate::check_matrix(hypothesis): Must be of type 'matrix', not
* 'character'
* checkmate::check_function(hypothesis): Must be a function, not
* 'character'
* checkmate::check_null(hypothesis): Must be NULL
Backtrace:
▆
1. ├─testthat::expect_s3_class(...) at test-test_predictions.R:268:3
2. │ └─testthat::quasi_label(enquo(object), arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─ggeffects::test_predictions(m, c("Sepal.Width.factor", "Petal.Width [0.5]"))
5. └─ggeffects:::test_predictions.default(...)
6. └─ggeffects:::.call_me(fun, fun_args, dot_args, include_random)
7. ├─base::suppressMessages(...)
8. │ └─base::withCallingHandlers(...)
9. ├─base::suppressWarnings(...)
10. │ └─base::withCallingHandlers(...)
11. ├─base::do.call(get(fun, asNamespace("marginaleffects")), all_args)
12. └─marginaleffects (local) `<fn>`(...)
13. └─marginaleffects::predictions(...)
14. └─marginaleffects:::sanitize_hypothesis(hypothesis, ...)
15. └─checkmate::assert(...)
16. └─checkmate:::mstopOrPush(res = msgs, v_name = .var.name, collection = add)
17. └─checkmate:::mstop("Assertion failed. %s", res)
── Error ('test-test_predictions.R:284:3'): test_predictions, make sure random effects group is categorical ──
Error: Assertion failed. One of the following must apply:
* checkmate::check_character(hypothesis): Must comply to pattern '='
* checkmate::check_numeric(hypothesis): Must be of type 'numeric', not
* 'character'
* checkmate::check_formula(hypothesis): Must be a formula, not
* character
* checkmate::check_matrix(hypothesis): Must be of type 'matrix', not
* 'character'
* checkmate::check_function(hypothesis): Must be a function, not
* 'character'
* checkmate::check_null(hypothesis): Must be NULL
Backtrace:
▆
1. ├─ggeffects::test_predictions(ggpredict(m, c("Days", "grp"))) at test-test_predictions.R:284:3
2. └─ggeffects:::test_predictions.ggeffects(...)
3. ├─base::do.call(test_predictions.default, c(my_args, dot_args))
4. └─ggeffects (local) `<fn>`(...)
5. └─ggeffects:::.call_me("slopes", fun_args, dot_args, include_random)
6. ├─base::suppressMessages(...)
7. │ └─base::withCallingHandlers(...)
8. ├─base::suppressWarnings(...)
9. │ └─base::withCallingHandlers(...)
10. ├─base::do.call(get(fun, asNamespace("marginaleffects")), all_args)
11. └─marginaleffects (local) `<fn>`(...)
12. └─marginaleffects::comparisons(...)
13. └─marginaleffects:::sanitize_hypothesis(hypothesis, ...)
14. └─checkmate::assert(...)
15. └─checkmate:::mstopOrPush(res = msgs, v_name = .var.name, collection = add)
16. └─checkmate:::mstop("Assertion failed. %s", res)
── Error ('test-test_predictions.R:307:3'): test_predictions, works with glmmTMB and w/o vcov ──
Error: Assertion failed. One of the following must apply:
* checkmate::check_character(hypothesis): Must comply to pattern '='
* checkmate::check_numeric(hypothesis): Must be of type 'numeric', not
* 'character'
* checkmate::check_formula(hypothesis): Must be a formula, not
* character
* checkmate::check_matrix(hypothesis): Must be of type 'matrix', not
* 'character'
* checkmate::check_function(hypothesis): Must be a function, not
* 'character'
* checkmate::check_null(hypothesis): Must be NULL
Backtrace:
▆
1. ├─ggeffects::test_predictions(predictions, verbose = FALSE) at test-test_predictions.R:307:3
2. └─ggeffects:::test_predictions.ggeffects(predictions, verbose = FALSE)
3. ├─base::do.call(test_predictions.default, c(my_args, dot_args))
4. └─ggeffects (local) `<fn>`(...)
5. └─ggeffects:::.call_me(fun, fun_args, dot_args, include_random)
6. ├─base::suppressMessages(...)
7. │ └─base::withCallingHandlers(...)
8. ├─base::suppressWarnings(...)
9. │ └─base::withCallingHandlers(...)
10. ├─base::do.call(get(fun, asNamespace("marginaleffects")), all_args)
11. └─marginaleffects (local) `<fn>`(...)
12. └─marginaleffects::predictions(...)
13. └─marginaleffects:::sanitize_hypothesis(hypothesis, ...)
14. └─checkmate::assert(...)
15. └─checkmate:::mstopOrPush(res = msgs, v_name = .var.name, collection = add)
16. └─checkmate:::mstop("Assertion failed. %s", res)
── Error ('test-test_predictions.R:331:3'): test_predictions, correct order of character vectors ──
Error: Assertion failed. One of the following must apply:
* checkmate::check_character(hypothesis): Must comply to pattern '='
* checkmate::check_numeric(hypothesis): Must be of type 'numeric', not
* 'character'
* checkmate::check_formula(hypothesis): Must be a formula, not
* character
* checkmate::check_matrix(hypothesis): Must be of type 'matrix', not
* 'character'
* checkmate::check_function(hypothesis): Must be a function, not
* 'character'
* checkmate::check_null(hypothesis): Must be NULL
Backtrace:
▆
1. ├─ggeffects::test_predictions(pr1) at test-test_predictions.R:331:3
2. └─ggeffects:::test_predictions.ggeffects(pr1)
3. ├─base::do.call(test_predictions.default, c(my_args, dot_args))
4. └─ggeffects (local) `<fn>`(...)
5. └─ggeffects:::.call_me(fun, fun_args, dot_args, include_random)
6. ├─base::do.call(get(fun, asNamespace("marginaleffects")), all_args)
7. └─marginaleffects (local) `<fn>`(...)
8. └─marginaleffects:::sanitize_hypothesis(hypothesis, ...)
9. └─checkmate::assert(...)
10. └─checkmate:::mstopOrPush(res = msgs, v_name = .var.name, collection = add)
11. └─checkmate:::mstop("Assertion failed. %s", res)
── Error ('test-test_predictions.R:350:3'): test_predictions, zero-inflated models ──
Error: Assertion failed. One of the following must apply:
* checkmate::check_character(hypothesis): Must comply to pattern '='
* checkmate::check_numeric(hypothesis): Must be of type 'numeric', not
* 'character'
* checkmate::check_formula(hypothesis): Must be a formula, not
* character
* checkmate::check_matrix(hypothesis): Must be of type 'matrix', not
* 'character'
* checkmate::check_function(hypothesis): Must be a function, not
* 'character'
* checkmate::check_null(hypothesis): Must be NULL
Backtrace:
▆
1. ├─ggeffects::test_predictions(pr1) at test-test_predictions.R:350:3
2. └─ggeffects:::test_predictions.ggeffects(pr1)
3. ├─base::do.call(test_predictions.default, c(my_args, dot_args))
4. └─ggeffects (local) `<fn>`(...)
5. └─ggeffects:::.call_me(fun, fun_args, dot_args, include_random)
6. ├─base::suppressMessages(...)
7. │ └─base::withCallingHandlers(...)
8. ├─base::suppressWarnings(...)
9. │ └─base::withCallingHandlers(...)
10. ├─base::do.call(get(fun, asNamespace("marginaleffects")), all_args)
11. └─marginaleffects (local) `<fn>`(...)
12. └─marginaleffects::predictions(...)
13. └─marginaleffects:::sanitize_hypothesis(hypothesis, ...)
14. └─checkmate::assert(...)
15. └─checkmate:::mstopOrPush(res = msgs, v_name = .var.name, collection = add)
16. └─checkmate:::mstop("Assertion failed. %s", res)
── Error ('test-test_predictions_emmeans.R:18:3'): test_predictions, engine emmeans ──
Error: Assertion failed. One of the following must apply:
* checkmate::check_character(hypothesis): Must comply to pattern '='
* checkmate::check_numeric(hypothesis): Must be of type 'numeric', not
* 'character'
* checkmate::check_formula(hypothesis): Must be a formula, not
* character
* checkmate::check_matrix(hypothesis): Must be of type 'matrix', not
* 'character'
* checkmate::check_function(hypothesis): Must be a function, not
* 'character'
* checkmate::check_null(hypothesis): Must be NULL
Backtrace:
▆
1. ├─ggeffects::test_predictions(m, "c172code") at test-test_predictions_emmeans.R:18:3
2. └─ggeffects:::test_predictions.default(m, "c172code")
3. └─ggeffects:::.call_me(fun, fun_args, dot_args, include_random)
4. ├─base::do.call(get(fun, asNamespace("marginaleffects")), all_args)
5. └─marginaleffects (local) `<fn>`(...)
6. └─marginaleffects:::sanitize_hypothesis(hypothesis, ...)
7. └─checkmate::assert(...)
8. └─checkmate:::mstopOrPush(res = msgs, v_name = .var.name, collection = add)
9. └─checkmate:::mstop("Assertion failed. %s", res)
── Error ('test-test_predictions_emmeans.R:80:3'): test_predictions, engine emmeans, glm binomial ──
Error: Assertion failed. One of the following must apply:
* checkmate::check_character(hypothesis): Must comply to pattern '='
* checkmate::check_numeric(hypothesis): Must be of type 'numeric', not
* 'character'
* checkmate::check_formula(hypothesis): Must be a formula, not
* character
* checkmate::check_matrix(hypothesis): Must be of type 'matrix', not
* 'character'
* checkmate::check_function(hypothesis): Must be a function, not
* 'character'
* checkmate::check_null(hypothesis): Must be NULL
Backtrace:
▆
1. ├─ggeffects::test_predictions(m, "var_binom", margin = "marginaleffects") at test-test_predictions_emmeans.R:80:3
2. └─ggeffects:::test_predictions.default(m, "var_binom", margin = "marginaleffects")
3. └─ggeffects:::.call_me(fun, fun_args, dot_args, include_random)
4. ├─base::do.call(get(fun, asNamespace("marginaleffects")), all_args)
5. └─marginaleffects (local) `<fn>`(...)
6. └─marginaleffects:::sanitize_hypothesis(hypothesis, ...)
7. └─checkmate::assert(...)
8. └─checkmate:::mstopOrPush(res = msgs, v_name = .var.name, collection = add)
9. └─checkmate:::mstop("Assertion failed. %s", res)
[ FAIL 31 | WARN 0 | SKIP 70 | PASS 565 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-windows-x86_64
Current CRAN status: ERROR: 7, OK: 6
Version: 1.0.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [327s/169s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(insight)
> test_check("insight")
Starting 2 test processes
[ FAIL 2 | WARN 0 | SKIP 72 | PASS 3413 ]
══ Skipped tests (72) ══════════════════════════════════════════════════════════
• On CRAN (64): 'test-GLMMadaptive.R:1:1', 'test-averaging.R:3:1',
'test-brms.R:1:1', 'test-brms_aterms.R:1:1',
'test-brms_gr_random_effects.R:1:1', 'test-brms_missing.R:1:1',
'test-brms_von_mises.R:1:1', 'test-blmer.R:249:3',
'test-clean_names.R:103:3', 'test-clean_parameters.R:2:3',
'test-clean_parameters.R:35:3', 'test-clmm.R:165:3', 'test-cpglmm.R:145:3',
'test-export_table.R:4:3', 'test-export_table.R:8:3',
'test-export_table.R:106:3', 'test-export_table.R:133:3',
'test-export_table.R:164:3', 'test-export_table.R:193:3',
'test-export_table.R:205:3', 'test-export_table.R:233:3',
'test-find_random.R:27:3', 'test-format_table.R:1:1',
'test-format_table_ci.R:71:3', 'test-gam.R:1:1', 'test-find_smooth.R:31:3',
'test-get_data.R:385:1', 'test-get_loglikelihood.R:93:3',
'test-get_loglikelihood.R:158:3', 'test-get_predicted.R:2:1',
'test-get_priors.R:3:3', 'test-get_varcov.R:40:3',
'test-is_converged.R:28:1', 'test-lme.R:34:3', 'test-lme.R:210:3',
'test-glmmTMB.R:71:3', 'test-glmmTMB.R:755:3', 'test-glmmTMB.R:787:3',
'test-marginaleffects.R:1:1', 'test-mgcv.R:1:1', 'test-mipo.R:1:1',
'test-mvrstanarm.R:1:1', 'test-panelr-asym.R:142:3', 'test-panelr.R:272:3',
'test-phylolm.R:5:1', 'test-r2_nakagawa_bernoulli.R:1:1',
'test-r2_nakagawa_beta.R:1:1', 'test-r2_nakagawa_binomial.R:1:1',
'test-r2_nakagawa_gamma.R:1:1', 'test-r2_nakagawa_linear.R:1:1',
'test-r2_nakagawa_negbin.R:1:1', 'test-r2_nakagawa_negbin_zi.R:1:1',
'test-r2_nakagawa_ordered_beta.R:1:1', 'test-r2_nakagawa_poisson.R:1:1',
'test-r2_nakagawa_poisson_zi.R:1:1',
'test-r2_nakagawa_truncated_poisson.R:1:1', 'test-r2_nakagawa_tweedie.R:1:1',
'test-rlmer.R:259:3', 'test-rqss.R:1:1', 'test-rstanarm.R:1:1',
'test-spatial.R:1:1', 'test-svylme.R:1:1', 'test-vgam.R:1:1',
'test-weightit.R:1:1'
• On Linux (3): 'test-BayesFactorBF.R:1:1', 'test-MCMCglmm.R:1:1',
'test-get_data.R:150:3'
• Package `logistf` is loaded and breaks `mmrm::mmrm()` (1): 'test-mmrm.R:4:1'
• TRUE is TRUE (1): 'test-fixest.R:2:1'
• works interactively (2): 'test-coxph-panel.R:34:3', 'test-coxph.R:38:3'
• {bigglm} is not installed (1): 'test-model_info.R:24:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-ggeffects.R:7:3'): get_parameters, hypothesis_test ─────────────
Error: Please specify the `by` argument to calculate contrasts of slopes.
Backtrace:
▆
1. ├─ggeffects::hypothesis_test(...) at test-ggeffects.R:7:3
2. └─ggeffects:::test_predictions.ggeffects(...)
3. ├─base::do.call(test_predictions.default, c(my_args, dot_args))
4. └─ggeffects (local) `<fn>`(...)
5. ├─modelbased::estimate_contrasts(...)
6. └─modelbased:::estimate_contrasts.default(...)
7. └─modelbased::get_marginalcontrasts(...)
8. └─insight::format_error("Please specify the `by` argument to calculate contrasts of slopes.")
9. └─insight::format_alert(..., type = "error")
── Error ('test-ggeffects.R:66:3'): get_statistic, hypothesis_test ─────────────
Error: Please specify the `by` argument to calculate contrasts of slopes.
Backtrace:
▆
1. ├─ggeffects::hypothesis_test(...) at test-ggeffects.R:66:3
2. └─ggeffects:::test_predictions.ggeffects(...)
3. ├─base::do.call(test_predictions.default, c(my_args, dot_args))
4. └─ggeffects (local) `<fn>`(...)
5. ├─modelbased::estimate_contrasts(...)
6. └─modelbased:::estimate_contrasts.default(...)
7. └─modelbased::get_marginalcontrasts(...)
8. └─insight::format_error("Please specify the `by` argument to calculate contrasts of slopes.")
9. └─insight::format_alert(..., type = "error")
[ FAIL 2 | WARN 0 | SKIP 72 | PASS 3413 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.0.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [212s/111s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(insight)
> test_check("insight")
Starting 2 test processes
[ FAIL 2 | WARN 0 | SKIP 72 | PASS 3413 ]
══ Skipped tests (72) ══════════════════════════════════════════════════════════
• On CRAN (64): 'test-GLMMadaptive.R:1:1', 'test-averaging.R:3:1',
'test-brms.R:1:1', 'test-brms_aterms.R:1:1',
'test-brms_gr_random_effects.R:1:1', 'test-brms_missing.R:1:1',
'test-brms_von_mises.R:1:1', 'test-blmer.R:249:3',
'test-clean_names.R:103:3', 'test-clean_parameters.R:2:3',
'test-clean_parameters.R:35:3', 'test-clmm.R:165:3', 'test-cpglmm.R:145:3',
'test-export_table.R:4:3', 'test-export_table.R:8:3',
'test-export_table.R:106:3', 'test-export_table.R:133:3',
'test-export_table.R:164:3', 'test-export_table.R:193:3',
'test-export_table.R:205:3', 'test-export_table.R:233:3',
'test-find_random.R:27:3', 'test-format_table.R:1:1',
'test-format_table_ci.R:71:3', 'test-gam.R:1:1', 'test-find_smooth.R:31:3',
'test-get_data.R:385:1', 'test-get_loglikelihood.R:93:3',
'test-get_loglikelihood.R:158:3', 'test-get_predicted.R:2:1',
'test-get_priors.R:3:3', 'test-get_varcov.R:40:3',
'test-is_converged.R:28:1', 'test-lme.R:34:3', 'test-lme.R:210:3',
'test-glmmTMB.R:71:3', 'test-glmmTMB.R:755:3', 'test-glmmTMB.R:787:3',
'test-marginaleffects.R:1:1', 'test-mgcv.R:1:1', 'test-mipo.R:1:1',
'test-mvrstanarm.R:1:1', 'test-panelr-asym.R:142:3', 'test-panelr.R:272:3',
'test-phylolm.R:5:1', 'test-r2_nakagawa_bernoulli.R:1:1',
'test-r2_nakagawa_beta.R:1:1', 'test-r2_nakagawa_binomial.R:1:1',
'test-r2_nakagawa_gamma.R:1:1', 'test-r2_nakagawa_linear.R:1:1',
'test-r2_nakagawa_negbin.R:1:1', 'test-r2_nakagawa_negbin_zi.R:1:1',
'test-r2_nakagawa_ordered_beta.R:1:1', 'test-r2_nakagawa_poisson.R:1:1',
'test-r2_nakagawa_poisson_zi.R:1:1',
'test-r2_nakagawa_truncated_poisson.R:1:1', 'test-r2_nakagawa_tweedie.R:1:1',
'test-rlmer.R:259:3', 'test-rqss.R:1:1', 'test-rstanarm.R:1:1',
'test-spatial.R:1:1', 'test-svylme.R:1:1', 'test-vgam.R:1:1',
'test-weightit.R:1:1'
• On Linux (3): 'test-BayesFactorBF.R:1:1', 'test-MCMCglmm.R:1:1',
'test-get_data.R:150:3'
• Package `logistf` is loaded and breaks `mmrm::mmrm()` (1): 'test-mmrm.R:4:1'
• TRUE is TRUE (1): 'test-fixest.R:2:1'
• works interactively (2): 'test-coxph-panel.R:34:3', 'test-coxph.R:38:3'
• {bigglm} is not installed (1): 'test-model_info.R:24:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-ggeffects.R:7:3'): get_parameters, hypothesis_test ─────────────
Error: Please specify the `by` argument to calculate contrasts of slopes.
Backtrace:
▆
1. ├─ggeffects::hypothesis_test(...) at test-ggeffects.R:7:3
2. └─ggeffects:::test_predictions.ggeffects(...)
3. ├─base::do.call(test_predictions.default, c(my_args, dot_args))
4. └─ggeffects (local) `<fn>`(...)
5. ├─modelbased::estimate_contrasts(...)
6. └─modelbased:::estimate_contrasts.default(...)
7. └─modelbased::get_marginalcontrasts(...)
8. └─insight::format_error("Please specify the `by` argument to calculate contrasts of slopes.")
9. └─insight::format_alert(..., type = "error")
── Error ('test-ggeffects.R:66:3'): get_statistic, hypothesis_test ─────────────
Error: Please specify the `by` argument to calculate contrasts of slopes.
Backtrace:
▆
1. ├─ggeffects::hypothesis_test(...) at test-ggeffects.R:66:3
2. └─ggeffects:::test_predictions.ggeffects(...)
3. ├─base::do.call(test_predictions.default, c(my_args, dot_args))
4. └─ggeffects (local) `<fn>`(...)
5. ├─modelbased::estimate_contrasts(...)
6. └─modelbased:::estimate_contrasts.default(...)
7. └─modelbased::get_marginalcontrasts(...)
8. └─insight::format_error("Please specify the `by` argument to calculate contrasts of slopes.")
9. └─insight::format_alert(..., type = "error")
[ FAIL 2 | WARN 0 | SKIP 72 | PASS 3413 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [329s/253s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(insight)
> test_check("insight")
Starting 2 test processes
[ FAIL 2 | WARN 0 | SKIP 72 | PASS 3427 ]
══ Skipped tests (72) ══════════════════════════════════════════════════════════
• On CRAN (64): 'test-GLMMadaptive.R:1:1', 'test-averaging.R:3:1',
'test-brms.R:1:1', 'test-brms_aterms.R:1:1',
'test-brms_gr_random_effects.R:1:1', 'test-brms_missing.R:1:1',
'test-brms_von_mises.R:1:1', 'test-blmer.R:249:3',
'test-clean_names.R:103:3', 'test-clean_parameters.R:2:3',
'test-clean_parameters.R:35:3', 'test-clmm.R:165:3', 'test-cpglmm.R:145:3',
'test-export_table.R:4:3', 'test-export_table.R:8:3',
'test-export_table.R:106:3', 'test-export_table.R:133:3',
'test-export_table.R:164:3', 'test-export_table.R:193:3',
'test-export_table.R:205:3', 'test-export_table.R:233:3',
'test-find_random.R:27:3', 'test-format_table.R:1:1',
'test-format_table_ci.R:71:3', 'test-gam.R:1:1', 'test-find_smooth.R:31:3',
'test-get_data.R:385:1', 'test-get_loglikelihood.R:93:3',
'test-get_loglikelihood.R:158:3', 'test-get_predicted.R:2:1',
'test-get_priors.R:3:3', 'test-get_varcov.R:40:3',
'test-is_converged.R:28:1', 'test-lme.R:34:3', 'test-lme.R:210:3',
'test-glmmTMB.R:71:3', 'test-glmmTMB.R:755:3', 'test-glmmTMB.R:787:3',
'test-marginaleffects.R:1:1', 'test-mgcv.R:1:1', 'test-mipo.R:1:1',
'test-mvrstanarm.R:1:1', 'test-panelr-asym.R:142:3', 'test-panelr.R:272:3',
'test-phylolm.R:5:1', 'test-r2_nakagawa_bernoulli.R:1:1',
'test-r2_nakagawa_beta.R:1:1', 'test-r2_nakagawa_binomial.R:1:1',
'test-r2_nakagawa_gamma.R:1:1', 'test-r2_nakagawa_linear.R:1:1',
'test-r2_nakagawa_negbin.R:1:1', 'test-r2_nakagawa_negbin_zi.R:1:1',
'test-r2_nakagawa_ordered_beta.R:1:1', 'test-r2_nakagawa_poisson.R:1:1',
'test-r2_nakagawa_poisson_zi.R:1:1',
'test-r2_nakagawa_truncated_poisson.R:1:1', 'test-r2_nakagawa_tweedie.R:1:1',
'test-rlmer.R:259:3', 'test-rqss.R:1:1', 'test-rstanarm.R:1:1',
'test-spatial.R:1:1', 'test-svylme.R:1:1', 'test-vgam.R:1:1',
'test-weightit.R:1:1'
• On Linux (3): 'test-BayesFactorBF.R:1:1', 'test-MCMCglmm.R:1:1',
'test-get_data.R:150:3'
• Package `logistf` is loaded and breaks `mmrm::mmrm()` (1): 'test-mmrm.R:4:1'
• TRUE is TRUE (1): 'test-fixest.R:2:1'
• works interactively (2): 'test-coxph-panel.R:34:3', 'test-coxph.R:38:3'
• {bigglm} is not installed (1): 'test-model_info.R:24:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-ggeffects.R:43:3'): get_parameters, hypothesis_test ────────────
Error: Assertion failed. One of the following must apply:
* checkmate::check_character(hypothesis): Must comply to pattern '='
* checkmate::check_numeric(hypothesis): Must be of type 'numeric', not
* 'character'
* checkmate::check_formula(hypothesis): Must be a formula, not
* character
* checkmate::check_matrix(hypothesis): Must be of type 'matrix', not
* 'character'
* checkmate::check_function(hypothesis): Must be a function, not
* 'character'
* checkmate::check_null(hypothesis): Must be NULL
Backtrace:
▆
1. ├─ggeffects::hypothesis_test(...) at test-ggeffects.R:43:3
2. └─ggeffects:::test_predictions.ggeffects(...)
3. ├─base::do.call(test_predictions.default, c(my_args, dot_args))
4. └─ggeffects (local) `<fn>`(...)
5. └─ggeffects:::.call_me("slopes", fun_args, dot_args, include_random)
6. ├─base::do.call(get(fun, asNamespace("marginaleffects")), all_args)
7. └─marginaleffects (local) `<fn>`(...)
8. └─marginaleffects::comparisons(...)
9. └─marginaleffects:::sanitize_hypothesis(hypothesis, ...)
10. └─checkmate::assert(...)
11. └─checkmate:::mstopOrPush(res = msgs, v_name = .var.name, collection = add)
12. └─checkmate:::mstop("Assertion failed. %s", res)
── Error ('test-ggeffects.R:102:3'): get_statistic, hypothesis_test ────────────
Error: Assertion failed. One of the following must apply:
* checkmate::check_character(hypothesis): Must comply to pattern '='
* checkmate::check_numeric(hypothesis): Must be of type 'numeric', not
* 'character'
* checkmate::check_formula(hypothesis): Must be a formula, not
* character
* checkmate::check_matrix(hypothesis): Must be of type 'matrix', not
* 'character'
* checkmate::check_function(hypothesis): Must be a function, not
* 'character'
* checkmate::check_null(hypothesis): Must be NULL
Backtrace:
▆
1. ├─ggeffects::hypothesis_test(...) at test-ggeffects.R:102:3
2. └─ggeffects:::test_predictions.ggeffects(...)
3. ├─base::do.call(test_predictions.default, c(my_args, dot_args))
4. └─ggeffects (local) `<fn>`(...)
5. └─ggeffects:::.call_me("slopes", fun_args, dot_args, include_random)
6. ├─base::do.call(get(fun, asNamespace("marginaleffects")), all_args)
7. └─marginaleffects (local) `<fn>`(...)
8. └─marginaleffects::comparisons(...)
9. └─marginaleffects:::sanitize_hypothesis(hypothesis, ...)
10. └─checkmate::assert(...)
11. └─checkmate:::mstopOrPush(res = msgs, v_name = .var.name, collection = add)
12. └─checkmate:::mstop("Assertion failed. %s", res)
[ FAIL 2 | WARN 0 | SKIP 72 | PASS 3427 ]
Error: Test failures
Execution halted
Flavor: r-patched-linux-x86_64
Version: 1.0.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [309s/254s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(insight)
> test_check("insight")
Starting 2 test processes
[ FAIL 2 | WARN 0 | SKIP 72 | PASS 3427 ]
══ Skipped tests (72) ══════════════════════════════════════════════════════════
• On CRAN (64): 'test-GLMMadaptive.R:1:1', 'test-averaging.R:3:1',
'test-brms.R:1:1', 'test-brms_aterms.R:1:1',
'test-brms_gr_random_effects.R:1:1', 'test-brms_missing.R:1:1',
'test-brms_von_mises.R:1:1', 'test-blmer.R:249:3',
'test-clean_names.R:103:3', 'test-clean_parameters.R:2:3',
'test-clean_parameters.R:35:3', 'test-clmm.R:165:3', 'test-cpglmm.R:145:3',
'test-export_table.R:4:3', 'test-export_table.R:8:3',
'test-export_table.R:106:3', 'test-export_table.R:133:3',
'test-export_table.R:164:3', 'test-export_table.R:193:3',
'test-export_table.R:205:3', 'test-export_table.R:233:3',
'test-find_random.R:27:3', 'test-format_table.R:1:1',
'test-format_table_ci.R:71:3', 'test-gam.R:1:1', 'test-find_smooth.R:31:3',
'test-get_data.R:385:1', 'test-get_loglikelihood.R:93:3',
'test-get_loglikelihood.R:158:3', 'test-get_predicted.R:2:1',
'test-get_priors.R:3:3', 'test-get_varcov.R:40:3',
'test-is_converged.R:28:1', 'test-lme.R:34:3', 'test-lme.R:210:3',
'test-glmmTMB.R:71:3', 'test-glmmTMB.R:755:3', 'test-glmmTMB.R:787:3',
'test-marginaleffects.R:1:1', 'test-mgcv.R:1:1', 'test-mipo.R:1:1',
'test-mvrstanarm.R:1:1', 'test-panelr-asym.R:142:3', 'test-panelr.R:272:3',
'test-phylolm.R:5:1', 'test-r2_nakagawa_bernoulli.R:1:1',
'test-r2_nakagawa_beta.R:1:1', 'test-r2_nakagawa_binomial.R:1:1',
'test-r2_nakagawa_gamma.R:1:1', 'test-r2_nakagawa_linear.R:1:1',
'test-r2_nakagawa_negbin.R:1:1', 'test-r2_nakagawa_negbin_zi.R:1:1',
'test-r2_nakagawa_ordered_beta.R:1:1', 'test-r2_nakagawa_poisson.R:1:1',
'test-r2_nakagawa_poisson_zi.R:1:1',
'test-r2_nakagawa_truncated_poisson.R:1:1', 'test-r2_nakagawa_tweedie.R:1:1',
'test-rqss.R:1:1', 'test-rstanarm.R:1:1', 'test-spatial.R:1:1',
'test-svylme.R:1:1', 'test-vgam.R:1:1', 'test-rlmer.R:259:3',
'test-weightit.R:1:1'
• On Linux (3): 'test-BayesFactorBF.R:1:1', 'test-MCMCglmm.R:1:1',
'test-get_data.R:150:3'
• Package `logistf` is loaded and breaks `mmrm::mmrm()` (1): 'test-mmrm.R:4:1'
• TRUE is TRUE (1): 'test-fixest.R:2:1'
• works interactively (2): 'test-coxph-panel.R:34:3', 'test-coxph.R:38:3'
• {bigglm} is not installed (1): 'test-model_info.R:24:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-ggeffects.R:43:3'): get_parameters, hypothesis_test ────────────
Error: Assertion failed. One of the following must apply:
* checkmate::check_character(hypothesis): Must comply to pattern '='
* checkmate::check_numeric(hypothesis): Must be of type 'numeric', not
* 'character'
* checkmate::check_formula(hypothesis): Must be a formula, not
* character
* checkmate::check_matrix(hypothesis): Must be of type 'matrix', not
* 'character'
* checkmate::check_function(hypothesis): Must be a function, not
* 'character'
* checkmate::check_null(hypothesis): Must be NULL
Backtrace:
▆
1. ├─ggeffects::hypothesis_test(...) at test-ggeffects.R:43:3
2. └─ggeffects:::test_predictions.ggeffects(...)
3. ├─base::do.call(test_predictions.default, c(my_args, dot_args))
4. └─ggeffects (local) `<fn>`(...)
5. └─ggeffects:::.call_me("slopes", fun_args, dot_args, include_random)
6. ├─base::do.call(get(fun, asNamespace("marginaleffects")), all_args)
7. └─marginaleffects (local) `<fn>`(...)
8. └─marginaleffects::comparisons(...)
9. └─marginaleffects:::sanitize_hypothesis(hypothesis, ...)
10. └─checkmate::assert(...)
11. └─checkmate:::mstopOrPush(res = msgs, v_name = .var.name, collection = add)
12. └─checkmate:::mstop("Assertion failed. %s", res)
── Error ('test-ggeffects.R:102:3'): get_statistic, hypothesis_test ────────────
Error: Assertion failed. One of the following must apply:
* checkmate::check_character(hypothesis): Must comply to pattern '='
* checkmate::check_numeric(hypothesis): Must be of type 'numeric', not
* 'character'
* checkmate::check_formula(hypothesis): Must be a formula, not
* character
* checkmate::check_matrix(hypothesis): Must be of type 'matrix', not
* 'character'
* checkmate::check_function(hypothesis): Must be a function, not
* 'character'
* checkmate::check_null(hypothesis): Must be NULL
Backtrace:
▆
1. ├─ggeffects::hypothesis_test(...) at test-ggeffects.R:102:3
2. └─ggeffects:::test_predictions.ggeffects(...)
3. ├─base::do.call(test_predictions.default, c(my_args, dot_args))
4. └─ggeffects (local) `<fn>`(...)
5. └─ggeffects:::.call_me("slopes", fun_args, dot_args, include_random)
6. ├─base::do.call(get(fun, asNamespace("marginaleffects")), all_args)
7. └─marginaleffects (local) `<fn>`(...)
8. └─marginaleffects::comparisons(...)
9. └─marginaleffects:::sanitize_hypothesis(hypothesis, ...)
10. └─checkmate::assert(...)
11. └─checkmate:::mstopOrPush(res = msgs, v_name = .var.name, collection = add)
12. └─checkmate:::mstop("Assertion failed. %s", res)
[ FAIL 2 | WARN 0 | SKIP 72 | PASS 3427 ]
Error: Test failures
Execution halted
Flavor: r-release-linux-x86_64
Version: 1.0.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [109s/57s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(insight)
> test_check("insight")
Starting 2 test processes
[ FAIL 2 | WARN 2 | SKIP 75 | PASS 3187 ]
══ Skipped tests (75) ══════════════════════════════════════════════════════════
• On CRAN (57): 'test-GLMMadaptive.R:1:1', 'test-averaging.R:3:1',
'test-brms.R:1:1', 'test-brms_aterms.R:1:1',
'test-brms_gr_random_effects.R:1:1', 'test-brms_missing.R:1:1',
'test-brms_von_mises.R:1:1', 'test-blmer.R:249:3',
'test-clean_names.R:103:3', 'test-clean_parameters.R:2:3',
'test-clean_parameters.R:35:3', 'test-clmm.R:165:3', 'test-cpglmm.R:145:3',
'test-export_table.R:4:3', 'test-export_table.R:8:3',
'test-export_table.R:106:3', 'test-export_table.R:133:3',
'test-export_table.R:164:3', 'test-export_table.R:193:3',
'test-export_table.R:205:3', 'test-export_table.R:233:3',
'test-find_smooth.R:31:3', 'test-find_random.R:27:3',
'test-format_table.R:1:1', 'test-format_table_ci.R:71:3', 'test-gam.R:1:1',
'test-get_loglikelihood.R:93:3', 'test-get_loglikelihood.R:158:3',
'test-get_varcov.R:40:3', 'test-lme.R:34:3', 'test-lme.R:210:3',
'test-marginaleffects.R:1:1', 'test-mgcv.R:1:1', 'test-mipo.R:1:1',
'test-mvrstanarm.R:1:1', 'test-panelr-asym.R:142:3', 'test-panelr.R:272:3',
'test-phylolm.R:5:1', 'test-r2_nakagawa_bernoulli.R:1:1',
'test-r2_nakagawa_beta.R:1:1', 'test-r2_nakagawa_binomial.R:1:1',
'test-r2_nakagawa_gamma.R:1:1', 'test-r2_nakagawa_linear.R:1:1',
'test-r2_nakagawa_negbin.R:1:1', 'test-r2_nakagawa_negbin_zi.R:1:1',
'test-r2_nakagawa_ordered_beta.R:1:1', 'test-r2_nakagawa_poisson.R:1:1',
'test-r2_nakagawa_poisson_zi.R:1:1',
'test-r2_nakagawa_truncated_poisson.R:1:1', 'test-r2_nakagawa_tweedie.R:1:1',
'test-rlmer.R:259:3', 'test-rqss.R:1:1', 'test-rstanarm.R:1:1',
'test-spatial.R:1:1', 'test-svylme.R:1:1', 'test-vgam.R:1:1',
'test-weightit.R:1:1'
• On Mac (12): 'test-MCMCglmm.R:1:1', 'test-epiR.R:1:1', 'test-get_data.R:1:1',
'test-get_datagrid.R:218:3', 'test-get_predicted.R:1:1',
'test-get_priors.R:2:3', 'test-get_random.R:1:1', 'test-glmmTMB.R:1:1',
'test-is_converged.R:27:1', 'test-model_data.R:26:1',
'test-null_model.R:13:1', 'test-vglm.R:1:1'
• Package `logistf` is loaded and breaks `mmrm::mmrm()` (1): 'test-mmrm.R:4:1'
• TRUE is TRUE (1): 'test-fixest.R:2:1'
• works interactively (2): 'test-coxph-panel.R:34:3', 'test-coxph.R:38:3'
• {bigglm} is not installed (1): 'test-model_info.R:24:3'
• {logistf} cannot be loaded (1): 'test-logistf.R:2:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-ggeffects.R:7:3'): get_parameters, hypothesis_test ─────────────
Error: Assertion failed. One of the following must apply:
* checkmate::check_character(hypothesis): Must comply to pattern '='
* checkmate::check_numeric(hypothesis): Must be of type 'numeric', not
* 'character'
* checkmate::check_formula(hypothesis): Must be a formula, not
* character
* checkmate::check_matrix(hypothesis): Must be of type 'matrix', not
* 'character'
* checkmate::check_function(hypothesis): Must be a function, not
* 'character'
* checkmate::check_null(hypothesis): Must be NULL
Backtrace:
▆
1. ├─ggeffects::test_predictions(mgg, "Sepal.Length", by = "Species") at test-ggeffects.R:7:3
2. └─ggeffects:::test_predictions.default(mgg, "Sepal.Length", by = "Species")
3. └─ggeffects:::.call_me("slopes", fun_args, dot_args, include_random)
4. ├─base::do.call(get(fun, asNamespace("marginaleffects")), all_args)
5. └─marginaleffects (local) `<fn>`(...)
6. └─marginaleffects::comparisons(...)
7. └─marginaleffects:::sanitize_hypothesis(hypothesis, ...)
8. └─checkmate::assert(...)
9. └─checkmate:::mstopOrPush(res = msgs, v_name = .var.name, collection = add)
10. └─checkmate:::mstop("Assertion failed. %s", res)
── Error ('test-ggeffects.R:42:3'): get_statistic, hypothesis_test ─────────────
Error: Assertion failed. One of the following must apply:
* checkmate::check_character(hypothesis): Must comply to pattern '='
* checkmate::check_numeric(hypothesis): Must be of type 'numeric', not
* 'character'
* checkmate::check_formula(hypothesis): Must be a formula, not
* character
* checkmate::check_matrix(hypothesis): Must be of type 'matrix', not
* 'character'
* checkmate::check_function(hypothesis): Must be a function, not
* 'character'
* checkmate::check_null(hypothesis): Must be NULL
Backtrace:
▆
1. ├─ggeffects::hypothesis_test(mgg, "Sepal.Length", by = "Species") at test-ggeffects.R:42:3
2. └─ggeffects:::test_predictions.default(mgg, "Sepal.Length", by = "Species")
3. └─ggeffects:::.call_me("slopes", fun_args, dot_args, include_random)
4. ├─base::do.call(get(fun, asNamespace("marginaleffects")), all_args)
5. └─marginaleffects (local) `<fn>`(...)
6. └─marginaleffects::comparisons(...)
7. └─marginaleffects:::sanitize_hypothesis(hypothesis, ...)
8. └─checkmate::assert(...)
9. └─checkmate:::mstopOrPush(res = msgs, v_name = .var.name, collection = add)
10. └─checkmate:::mstop("Assertion failed. %s", res)
[ FAIL 2 | WARN 2 | SKIP 75 | PASS 3187 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-arm64
Version: 1.0.1
Check: tests
Result: ERROR
Running 'testthat.R' [168s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(insight)
> test_check("insight")
Starting 2 test processes
[ FAIL 2 | WARN 0 | SKIP 69 | PASS 3512 ]
══ Skipped tests (69) ══════════════════════════════════════════════════════════
• On CRAN (63): 'test-GLMMadaptive.R:1:1', 'test-averaging.R:3:1',
'test-brms.R:1:1', 'test-brms_aterms.R:1:1',
'test-brms_gr_random_effects.R:1:1', 'test-brms_missing.R:1:1',
'test-brms_von_mises.R:1:1', 'test-blmer.R:249:3',
'test-clean_names.R:103:3', 'test-clean_parameters.R:2:3',
'test-clean_parameters.R:35:3', 'test-clmm.R:165:3', 'test-cpglmm.R:145:3',
'test-export_table.R:4:3', 'test-export_table.R:8:3',
'test-export_table.R:106:3', 'test-export_table.R:133:3',
'test-export_table.R:164:3', 'test-export_table.R:193:3',
'test-export_table.R:205:3', 'test-export_table.R:233:3',
'test-find_smooth.R:31:3', 'test-find_random.R:27:3',
'test-format_table.R:1:1', 'test-format_table_ci.R:71:3', 'test-gam.R:1:1',
'test-get_data.R:385:1', 'test-get_loglikelihood.R:93:3',
'test-get_loglikelihood.R:158:3', 'test-get_predicted.R:2:1',
'test-get_varcov.R:40:3', 'test-is_converged.R:28:1', 'test-lme.R:34:3',
'test-lme.R:210:3', 'test-glmmTMB.R:71:3', 'test-glmmTMB.R:755:3',
'test-glmmTMB.R:787:3', 'test-marginaleffects.R:1:1', 'test-mgcv.R:1:1',
'test-mipo.R:1:1', 'test-mvrstanarm.R:1:1', 'test-panelr-asym.R:142:3',
'test-panelr.R:272:3', 'test-phylolm.R:5:1',
'test-r2_nakagawa_bernoulli.R:1:1', 'test-r2_nakagawa_beta.R:1:1',
'test-r2_nakagawa_binomial.R:1:1', 'test-r2_nakagawa_gamma.R:1:1',
'test-r2_nakagawa_linear.R:1:1', 'test-r2_nakagawa_negbin.R:1:1',
'test-r2_nakagawa_negbin_zi.R:1:1', 'test-r2_nakagawa_ordered_beta.R:1:1',
'test-r2_nakagawa_poisson.R:1:1', 'test-r2_nakagawa_poisson_zi.R:1:1',
'test-r2_nakagawa_truncated_poisson.R:1:1', 'test-r2_nakagawa_tweedie.R:1:1',
'test-rqss.R:1:1', 'test-rstanarm.R:1:1', 'test-spatial.R:1:1',
'test-rlmer.R:259:3', 'test-svylme.R:1:1', 'test-vgam.R:1:1',
'test-weightit.R:1:1'
• On Windows (1): 'test-get_priors.R:2:3'
• Package `logistf` is loaded and breaks `mmrm::mmrm()` (1): 'test-mmrm.R:4:1'
• TRUE is TRUE (1): 'test-fixest.R:2:1'
• works interactively (2): 'test-coxph-panel.R:34:3', 'test-coxph.R:38:3'
• {bigglm} is not installed (1): 'test-model_info.R:24:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-ggeffects.R:7:3'): get_parameters, hypothesis_test ─────────────
Error: Please specify the `by` argument to calculate contrasts of slopes.
Backtrace:
▆
1. ├─ggeffects::hypothesis_test(...) at test-ggeffects.R:7:3
2. └─ggeffects:::test_predictions.ggeffects(...)
3. ├─base::do.call(test_predictions.default, c(my_args, dot_args))
4. └─ggeffects (local) `<fn>`(...)
5. ├─modelbased::estimate_contrasts(...)
6. └─modelbased:::estimate_contrasts.default(...)
7. └─modelbased::get_marginalcontrasts(...)
8. └─insight::format_error("Please specify the `by` argument to calculate contrasts of slopes.")
9. └─insight::format_alert(..., type = "error")
── Error ('test-ggeffects.R:66:3'): get_statistic, hypothesis_test ─────────────
Error: Please specify the `by` argument to calculate contrasts of slopes.
Backtrace:
▆
1. ├─ggeffects::hypothesis_test(...) at test-ggeffects.R:66:3
2. └─ggeffects:::test_predictions.ggeffects(...)
3. ├─base::do.call(test_predictions.default, c(my_args, dot_args))
4. └─ggeffects (local) `<fn>`(...)
5. ├─modelbased::estimate_contrasts(...)
6. └─modelbased:::estimate_contrasts.default(...)
7. └─modelbased::get_marginalcontrasts(...)
8. └─insight::format_error("Please specify the `by` argument to calculate contrasts of slopes.")
9. └─insight::format_alert(..., type = "error")
[ FAIL 2 | WARN 0 | SKIP 69 | PASS 3512 ]
Error: Test failures
Execution halted
Flavor: r-release-windows-x86_64
Version: 1.0.1
Check: tests
Result: ERROR
Running 'testthat.R' [226s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(insight)
> test_check("insight")
Starting 2 test processes
[ FAIL 2 | WARN 0 | SKIP 69 | PASS 3494 ]
══ Skipped tests (69) ══════════════════════════════════════════════════════════
• On CRAN (62): 'test-GLMMadaptive.R:1:1', 'test-averaging.R:3:1',
'test-brms.R:1:1', 'test-brms_aterms.R:1:1',
'test-brms_gr_random_effects.R:1:1', 'test-brms_missing.R:1:1',
'test-brms_von_mises.R:1:1', 'test-blmer.R:249:3',
'test-clean_names.R:103:3', 'test-clean_parameters.R:2:3',
'test-clean_parameters.R:35:3', 'test-clmm.R:165:3',
'test-export_table.R:4:3', 'test-export_table.R:8:3',
'test-export_table.R:106:3', 'test-export_table.R:133:3',
'test-export_table.R:164:3', 'test-export_table.R:193:3',
'test-export_table.R:205:3', 'test-export_table.R:233:3',
'test-find_random.R:27:3', 'test-format_table.R:1:1',
'test-find_smooth.R:31:3', 'test-format_table_ci.R:71:3', 'test-gam.R:1:1',
'test-get_data.R:385:1', 'test-get_loglikelihood.R:93:3',
'test-get_loglikelihood.R:158:3', 'test-get_predicted.R:2:1',
'test-get_varcov.R:40:3', 'test-is_converged.R:28:1', 'test-lme.R:34:3',
'test-lme.R:210:3', 'test-glmmTMB.R:71:3', 'test-glmmTMB.R:755:3',
'test-glmmTMB.R:787:3', 'test-marginaleffects.R:1:1', 'test-mgcv.R:1:1',
'test-mipo.R:1:1', 'test-mvrstanarm.R:1:1', 'test-panelr-asym.R:142:3',
'test-panelr.R:272:3', 'test-phylolm.R:5:1',
'test-r2_nakagawa_bernoulli.R:1:1', 'test-r2_nakagawa_beta.R:1:1',
'test-r2_nakagawa_binomial.R:1:1', 'test-r2_nakagawa_gamma.R:1:1',
'test-r2_nakagawa_linear.R:1:1', 'test-r2_nakagawa_negbin.R:1:1',
'test-r2_nakagawa_negbin_zi.R:1:1', 'test-r2_nakagawa_ordered_beta.R:1:1',
'test-r2_nakagawa_poisson.R:1:1', 'test-r2_nakagawa_poisson_zi.R:1:1',
'test-r2_nakagawa_truncated_poisson.R:1:1', 'test-r2_nakagawa_tweedie.R:1:1',
'test-rlmer.R:259:3', 'test-rqss.R:1:1', 'test-rstanarm.R:1:1',
'test-spatial.R:1:1', 'test-svylme.R:1:1', 'test-vgam.R:1:1',
'test-weightit.R:1:1'
• On Windows (1): 'test-get_priors.R:2:3'
• Package `logistf` is loaded and breaks `mmrm::mmrm()` (1): 'test-mmrm.R:4:1'
• TRUE is TRUE (1): 'test-fixest.R:2:1'
• getRversion() >= "4.4.0" is not TRUE (1): 'test-cpglmm.R:1:1'
• works interactively (2): 'test-coxph-panel.R:34:3', 'test-coxph.R:38:3'
• {bigglm} is not installed (1): 'test-model_info.R:24:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-ggeffects.R:43:3'): get_parameters, hypothesis_test ────────────
Error: Assertion failed. One of the following must apply:
* checkmate::check_character(hypothesis): Must comply to pattern '='
* checkmate::check_numeric(hypothesis): Must be of type 'numeric', not
* 'character'
* checkmate::check_formula(hypothesis): Must be a formula, not
* character
* checkmate::check_matrix(hypothesis): Must be of type 'matrix', not
* 'character'
* checkmate::check_function(hypothesis): Must be a function, not
* 'character'
* checkmate::check_null(hypothesis): Must be NULL
Backtrace:
▆
1. ├─ggeffects::hypothesis_test(...) at test-ggeffects.R:43:3
2. └─ggeffects:::test_predictions.ggeffects(...)
3. ├─base::do.call(test_predictions.default, c(my_args, dot_args))
4. └─ggeffects (local) `<fn>`(...)
5. └─ggeffects:::.call_me("slopes", fun_args, dot_args, include_random)
6. ├─base::do.call(get(fun, asNamespace("marginaleffects")), all_args)
7. └─marginaleffects (local) `<fn>`(...)
8. └─marginaleffects::comparisons(...)
9. └─marginaleffects:::sanitize_hypothesis(hypothesis, ...)
10. └─checkmate::assert(...)
11. └─checkmate:::mstopOrPush(res = msgs, v_name = .var.name, collection = add)
12. └─checkmate:::mstop("Assertion failed. %s", res)
── Error ('test-ggeffects.R:102:3'): get_statistic, hypothesis_test ────────────
Error: Assertion failed. One of the following must apply:
* checkmate::check_character(hypothesis): Must comply to pattern '='
* checkmate::check_numeric(hypothesis): Must be of type 'numeric', not
* 'character'
* checkmate::check_formula(hypothesis): Must be a formula, not
* character
* checkmate::check_matrix(hypothesis): Must be of type 'matrix', not
* 'character'
* checkmate::check_function(hypothesis): Must be a function, not
* 'character'
* checkmate::check_null(hypothesis): Must be NULL
Backtrace:
▆
1. ├─ggeffects::hypothesis_test(...) at test-ggeffects.R:102:3
2. └─ggeffects:::test_predictions.ggeffects(...)
3. ├─base::do.call(test_predictions.default, c(my_args, dot_args))
4. └─ggeffects (local) `<fn>`(...)
5. └─ggeffects:::.call_me("slopes", fun_args, dot_args, include_random)
6. ├─base::do.call(get(fun, asNamespace("marginaleffects")), all_args)
7. └─marginaleffects (local) `<fn>`(...)
8. └─marginaleffects::comparisons(...)
9. └─marginaleffects:::sanitize_hypothesis(hypothesis, ...)
10. └─checkmate::assert(...)
11. └─checkmate:::mstopOrPush(res = msgs, v_name = .var.name, collection = add)
12. └─checkmate:::mstop("Assertion failed. %s", res)
[ FAIL 2 | WARN 0 | SKIP 69 | PASS 3494 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: NOTE: 3, OK: 10
Version: 2.8.10
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
to_value.Rd: set_labels
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13