Last updated on 2024-12-18 19:49:35 CET.
| Package | ERROR | OK |
|---|---|---|
| APCalign | 4 | 9 |
Current CRAN status: ERROR: 4, OK: 9
Version: 1.1.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [2s/3s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(APCalign)
>
> test_check("APCalign")
Downloading...
trying URL 'https://github.com/traitecoevo/APCalign/releases/download/0.0.2.9000/apc.parquet'
Internet or server may be down; error in downloading or reading the file: cannot open URL 'https://github.com/traitecoevo/APCalign/releases/download/0.0.2.9000/apc.parquet'
trying URL 'https://github.com/traitecoevo/APCalign/releases/download/0.0.2.9000/apni.parquet'
Internet or server may be down; error in downloading or reading the file: cannot open URL 'https://github.com/traitecoevo/APCalign/releases/download/0.0.2.9000/apni.parquet'
Loading resources into memory...
===========================Error in `FUN()`:
! In path: "/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/APCalign.Rcheck/tests/testthat/helper.R"
Caused by error in `UseMethod()`:
! no applicable method for 'rename' applied to an object of class "NULL"
Backtrace:
▆
1. ├─testthat::test_check("APCalign")
2. │ └─testthat::test_dir(...)
3. │ └─testthat:::test_files(...)
4. │ └─testthat:::test_files_serial(...)
5. │ └─testthat:::test_files_setup_state(...)
6. │ └─testthat::source_test_helpers(".", env)
7. │ └─testthat::source_dir(path, "^helper.*\\.[rR]$", env = env, wrap = FALSE)
8. │ └─base::lapply(...)
9. │ └─testthat (local) FUN(X[[i]], ...)
10. │ └─testthat::source_file(path, env = env, chdir = chdir, wrap = wrap)
11. │ ├─base::withCallingHandlers(...)
12. │ └─base::eval(exprs, env)
13. │ └─base::eval(exprs, env)
14. │ └─APCalign::load_taxonomic_resources(...) at tests/testthat/helper.R:5:3
15. │ └─... %>% ...
16. ├─dplyr::mutate(., genus = extract_genus(canonical_name), taxon_rank = standardise_taxon_rank(taxon_rank))
17. ├─dplyr::rename(., dplyr::any_of(column_rename))
18. └─base::.handleSimpleError(...)
19. └─testthat (local) h(simpleError(msg, call))
20. └─rlang::abort(...)
Warning messages:
1: In utils::download.file(url, path_to_file, mode = "wb") :
cannot open URL 'https://github.com/traitecoevo/APCalign/releases/download/0.0.2.9000/apc.parquet': HTTP status was '404 Not Found'
2: In utils::download.file(url, path_to_file, mode = "wb") :
cannot open URL 'https://github.com/traitecoevo/APCalign/releases/download/0.0.2.9000/apni.parquet': HTTP status was '404 Not Found'
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.1.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [1s/2s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(APCalign)
>
> test_check("APCalign")
Downloading...
trying URL 'https://github.com/traitecoevo/APCalign/releases/download/0.0.2.9000/apc.parquet'
Internet or server may be down; error in downloading or reading the file: cannot open URL 'https://github.com/traitecoevo/APCalign/releases/download/0.0.2.9000/apc.parquet'
trying URL 'https://github.com/traitecoevo/APCalign/releases/download/0.0.2.9000/apni.parquet'
Internet or server may be down; error in downloading or reading the file: cannot open URL 'https://github.com/traitecoevo/APCalign/releases/download/0.0.2.9000/apni.parquet'
Loading resources into memory...
===========================Error in `FUN()`:
! In path: "/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/APCalign.Rcheck/tests/testthat/helper.R"
Caused by error in `UseMethod()`:
! no applicable method for 'rename' applied to an object of class "NULL"
Backtrace:
▆
1. ├─testthat::test_check("APCalign")
2. │ └─testthat::test_dir(...)
3. │ └─testthat:::test_files(...)
4. │ └─testthat:::test_files_serial(...)
5. │ └─testthat:::test_files_setup_state(...)
6. │ └─testthat::source_test_helpers(".", env)
7. │ └─testthat::source_dir(path, "^helper.*\\.[rR]$", env = env, wrap = FALSE)
8. │ └─base::lapply(...)
9. │ └─testthat (local) FUN(X[[i]], ...)
10. │ └─testthat::source_file(path, env = env, chdir = chdir, wrap = wrap)
11. │ ├─base::withCallingHandlers(...)
12. │ └─base::eval(exprs, env)
13. │ └─base::eval(exprs, env)
14. │ └─APCalign::load_taxonomic_resources(...) at tests/testthat/helper.R:5:3
15. │ └─... %>% ...
16. ├─dplyr::mutate(., genus = extract_genus(canonical_name), taxon_rank = standardise_taxon_rank(taxon_rank))
17. ├─dplyr::rename(., dplyr::any_of(column_rename))
18. └─base::.handleSimpleError(...)
19. └─testthat (local) h(simpleError(msg, call))
20. └─rlang::abort(...)
Warning messages:
1: In utils::download.file(url, path_to_file, mode = "wb") :
cannot open URL 'https://github.com/traitecoevo/APCalign/releases/download/0.0.2.9000/apc.parquet': HTTP status was '404 Not Found'
2: In utils::download.file(url, path_to_file, mode = "wb") :
cannot open URL 'https://github.com/traitecoevo/APCalign/releases/download/0.0.2.9000/apni.parquet': HTTP status was '404 Not Found'
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.1.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [2s/14s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(APCalign)
>
> test_check("APCalign")
Downloading...
trying URL 'https://github.com/traitecoevo/APCalign/releases/download/0.0.2.9000/apc.parquet'
Internet or server may be down; error in downloading or reading the file: cannot open URL 'https://github.com/traitecoevo/APCalign/releases/download/0.0.2.9000/apc.parquet'
trying URL 'https://github.com/traitecoevo/APCalign/releases/download/0.0.2.9000/apni.parquet'
Internet or server may be down; error in downloading or reading the file: cannot open URL 'https://github.com/traitecoevo/APCalign/releases/download/0.0.2.9000/apni.parquet'
Loading resources into memory...
===========================Error in `FUN()`:
! In path: "/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/APCalign.Rcheck/tests/testthat/helper.R"
Caused by error in `UseMethod()`:
! no applicable method for 'rename' applied to an object of class "NULL"
Backtrace:
▆
1. ├─testthat::test_check("APCalign")
2. │ └─testthat::test_dir(...)
3. │ └─testthat:::test_files(...)
4. │ └─testthat:::test_files_serial(...)
5. │ └─testthat:::test_files_setup_state(...)
6. │ └─testthat::source_test_helpers(".", env)
7. │ └─testthat::source_dir(path, "^helper.*\\.[rR]$", env = env, wrap = FALSE)
8. │ └─base::lapply(...)
9. │ └─testthat (local) FUN(X[[i]], ...)
10. │ └─testthat::source_file(path, env = env, chdir = chdir, wrap = wrap)
11. │ ├─base::withCallingHandlers(...)
12. │ └─base::eval(exprs, env)
13. │ └─base::eval(exprs, env)
14. │ └─APCalign::load_taxonomic_resources(...) at tests/testthat/helper.R:5:3
15. │ └─... %>% ...
16. ├─dplyr::mutate(., genus = extract_genus(canonical_name), taxon_rank = standardise_taxon_rank(taxon_rank))
17. ├─dplyr::rename(., dplyr::any_of(column_rename))
18. └─base::.handleSimpleError(...)
19. └─testthat (local) h(simpleError(msg, call))
20. └─rlang::abort(...)
Warning messages:
1: In utils::download.file(url, path_to_file, mode = "wb") :
cannot open URL 'https://github.com/traitecoevo/APCalign/releases/download/0.0.2.9000/apc.parquet': HTTP status was '404 Not Found'
2: In utils::download.file(url, path_to_file, mode = "wb") :
cannot open URL 'https://github.com/traitecoevo/APCalign/releases/download/0.0.2.9000/apni.parquet': HTTP status was '404 Not Found'
Execution halted
Flavor: r-patched-linux-x86_64
Version: 1.1.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [2s/3s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(APCalign)
>
> test_check("APCalign")
Downloading...
trying URL 'https://github.com/traitecoevo/APCalign/releases/download/0.0.2.9000/apc.parquet'
Internet or server may be down; error in downloading or reading the file: cannot open URL 'https://github.com/traitecoevo/APCalign/releases/download/0.0.2.9000/apc.parquet'
trying URL 'https://github.com/traitecoevo/APCalign/releases/download/0.0.2.9000/apni.parquet'
Internet or server may be down; error in downloading or reading the file: cannot open URL 'https://github.com/traitecoevo/APCalign/releases/download/0.0.2.9000/apni.parquet'
Loading resources into memory...
===========================Error in `FUN()`:
! In path: "/home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/APCalign.Rcheck/tests/testthat/helper.R"
Caused by error in `UseMethod()`:
! no applicable method for 'rename' applied to an object of class "NULL"
Backtrace:
▆
1. ├─testthat::test_check("APCalign")
2. │ └─testthat::test_dir(...)
3. │ └─testthat:::test_files(...)
4. │ └─testthat:::test_files_serial(...)
5. │ └─testthat:::test_files_setup_state(...)
6. │ └─testthat::source_test_helpers(".", env)
7. │ └─testthat::source_dir(path, "^helper.*\\.[rR]$", env = env, wrap = FALSE)
8. │ └─base::lapply(...)
9. │ └─testthat (local) FUN(X[[i]], ...)
10. │ └─testthat::source_file(path, env = env, chdir = chdir, wrap = wrap)
11. │ ├─base::withCallingHandlers(...)
12. │ └─base::eval(exprs, env)
13. │ └─base::eval(exprs, env)
14. │ └─APCalign::load_taxonomic_resources(...) at tests/testthat/helper.R:5:3
15. │ └─... %>% ...
16. ├─dplyr::mutate(., genus = extract_genus(canonical_name), taxon_rank = standardise_taxon_rank(taxon_rank))
17. ├─dplyr::rename(., dplyr::any_of(column_rename))
18. └─base::.handleSimpleError(...)
19. └─testthat (local) h(simpleError(msg, call))
20. └─rlang::abort(...)
Warning messages:
1: In utils::download.file(url, path_to_file, mode = "wb") :
cannot open URL 'https://github.com/traitecoevo/APCalign/releases/download/0.0.2.9000/apc.parquet': HTTP status was '404 Not Found'
2: In utils::download.file(url, path_to_file, mode = "wb") :
cannot open URL 'https://github.com/traitecoevo/APCalign/releases/download/0.0.2.9000/apni.parquet': HTTP status was '404 Not Found'
Execution halted
Flavor: r-release-linux-x86_64