Last updated on 2025-02-07 08:51:59 CET.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| easyDifferentialGeneCoexpression | 8 | 5 | |
| geneExpressionFromGEO | 1 | 2 | 10 |
| SaturnCoefficient | 13 |
Current CRAN status: ERROR: 8, OK: 5
Version: 1.4
Check: examples
Result: ERROR
Running examples in ‘easyDifferentialGeneCoexpression-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: easyDifferentialGeneCoexpression
> ### Title: Function that computes the differential coexpression of a list
> ### of probesets in a specific dataset and returns the most significant
> ### pairs
> ### Aliases: easyDifferentialGeneCoexpression
>
> ### ** Examples
>
>
> probesetList <- c("200738_s_at", "217356_s_at", "206686_at")
> verboseFlag <- "TRUE"
> batchCorrection <- "TRUE"
> signDiffCoexpressGenePairs <- easyDifferentialGeneCoexpression(probesetList,
+ "GSE3268", "description", "Normal", "Tumor", verboseFlag)
Processed URL: https://ftp.ncbi.nlm.nih.gov/geo/series/GSE3nnn/GSE3268
Found 1 file(s)
GSE3268_series_matrix.txt.gz
Error in .Call(R_curl_fetch_memory, enc2utf8(url), handle, nonblocking) :
reached elapsed time limit
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 1.4
Check: examples
Result: ERROR
Running examples in ‘easyDifferentialGeneCoexpression-Ex.R’ failed
The error most likely occurred in:
> ### Name: easyDifferentialGeneCoexpression
> ### Title: Function that computes the differential coexpression of a list
> ### of probesets in a specific dataset and returns the most significant
> ### pairs
> ### Aliases: easyDifferentialGeneCoexpression
>
> ### ** Examples
>
>
> probesetList <- c("200738_s_at", "217356_s_at", "206686_at")
> verboseFlag <- "TRUE"
> batchCorrection <- "TRUE"
> signDiffCoexpressGenePairs <- easyDifferentialGeneCoexpression(probesetList,
+ "GSE3268", "description", "Normal", "Tumor", verboseFlag)
Processed URL: https://ftp.ncbi.nlm.nih.gov/geo/series/GSE3nnn/GSE3268
Found 1 file(s)
GSE3268_series_matrix.txt.gz
Error in .Call(R_curl_fetch_memory, enc2utf8(url), handle, nonblocking) :
reached elapsed time limit
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 1.4
Check: examples
Result: ERROR
Running examples in 'easyDifferentialGeneCoexpression-Ex.R' failed
The error most likely occurred in:
> ### Name: easyDifferentialGeneCoexpression
> ### Title: Function that computes the differential coexpression of a list
> ### of probesets in a specific dataset and returns the most significant
> ### pairs
> ### Aliases: easyDifferentialGeneCoexpression
>
> ### ** Examples
>
>
> probesetList <- c("200738_s_at", "217356_s_at", "206686_at")
> verboseFlag <- "TRUE"
> batchCorrection <- "TRUE"
> signDiffCoexpressGenePairs <- easyDifferentialGeneCoexpression(probesetList,
+ "GSE3268", "description", "Normal", "Tumor", verboseFlag)
Processed URL: https://ftp.ncbi.nlm.nih.gov/geo/series/GSE3nnn/GSE3268
Found 1 file(s)
GSE3268_series_matrix.txt.gz
Error in .Call(R_download_curl, url, tmp, quiet, mode, handle, nonblocking) :
reached elapsed time limit
Execution halted
Flavors: r-devel-windows-x86_64, r-oldrel-windows-x86_64
Current CRAN status: ERROR: 1, NOTE: 2, OK: 10
Version: 0.9
Check: dependencies in R code
Result: NOTE
Namespaces in Imports field not imported from:
‘BiocManager’ ‘R.utils’ ‘markdown’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.9
Check: package dependencies
Result: ERROR
Package required but not available: ‘GEOquery’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-oldrel-macos-arm64
Current CRAN status: OK: 13