Last updated on 2025-02-07 08:52:00 CET.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| CodelistGenerator | 13 | ||
| CohortConstructor | 6 | 7 | |
| CohortSurvival | 5 | 8 | |
| IncidencePrevalence | 5 | 8 | |
| PhenotypeR | 1 | 12 |
Current CRAN status: OK: 13
Current CRAN status: NOTE: 6, OK: 7
Version: 0.3.4
Check: installed package size
Result: NOTE
installed size is 10.1Mb
sub-directories of 1Mb or more:
doc 9.4Mb
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64
Version: 0.3.3
Check: installed package size
Result: NOTE
installed size is 10.1Mb
sub-directories of 1Mb or more:
doc 9.4Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: NOTE: 5, OK: 8
Version: 0.6.2
Check: DESCRIPTION meta-information
Result: NOTE
Missing dependency on R >= 4.1.0 because package code uses the pipe
|> or function shorthand \(...) syntax added in R 4.1.0.
File(s) using such syntax:
‘inputValidation.R’ ‘plotSurvival.R’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64
Current CRAN status: NOTE: 5, OK: 8
Version: 1.0.0
Check: DESCRIPTION meta-information
Result: NOTE
Missing dependency on R >= 4.1.0 because package code uses the pipe
|> or function shorthand \(...) syntax added in R 4.1.0.
File(s) using such syntax:
‘estimateIncidence.R’ ‘estimatePrevalence.R’
‘generateDenominatorCohortSet.R’ ‘plotting.R’ ‘tables.R’
‘tidyResults.R’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64
Current CRAN status: ERROR: 1, OK: 12
Version: 0.1.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘a01_DatabaseDiagnostics.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip'
Content type 'application/zip' length 593048982 bytes (565.6 MB)
==================================================
downloaded 565.6 MB
Warning in file(con, "w") :
cannot open file 'a01_DatabaseDiagnostics.knit.md': No space left on device
Error: processing vignette 'a01_DatabaseDiagnostics.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘a01_DatabaseDiagnostics.Rmd’
--- re-building ‘a02_CodelistDiagnostics.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip'
Content type 'application/zip' length 593048982 bytes (565.6 MB)
==================================================
downloaded 565.6 MB
Warning in close.connection(con) :
Problem closing connection: No space left on device
Quitting from lines 30-55 [unnamed-chunk-2] (a02_CodelistDiagnostics.Rmd)
Error: processing vignette 'a02_CodelistDiagnostics.Rmd' failed with diagnostics:
rapi_execute: Failed to run query
Error: IO Error: Could not write file "/private/var/folders/k4/0jwzxmln0nb8y6rkzprptb640000gq/T/RtmpxA62aP/synpuf-1k_5.3_1.1.duckdb": No space left on device
--- failed re-building ‘a02_CodelistDiagnostics.Rmd’
--- re-building ‘a03_CohortDiagnostics.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip'
Content type 'application/zip' length 593048982 bytes (565.6 MB)
==================================================
downloaded 565.6 MB
Warning in file(con, "w") :
cannot open file 'a03_CohortDiagnostics.knit.md': No space left on device
Error: processing vignette 'a03_CohortDiagnostics.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘a03_CohortDiagnostics.Rmd’
--- re-building ‘a04_MatchedDiagnostics.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip'
Content type 'application/zip' length 593048982 bytes (565.6 MB)
==================================================
downloaded 565.6 MB
--- finished re-building ‘a04_MatchedDiagnostics.Rmd’
--- re-building ‘a05_PopulationDiagnostics.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip'
Content type 'application/zip' length 593048982 bytes (565.6 MB)
==================================================
downloaded 565.6 MB
Quitting from lines 27-48 [unnamed-chunk-2] (a05_PopulationDiagnostics.Rmd)
Error: processing vignette 'a05_PopulationDiagnostics.Rmd' failed with diagnostics:
rapi_execute: Failed to run query
Error: IO Error: Could not write file "/private/var/folders/k4/0jwzxmln0nb8y6rkzprptb640000gq/T/RtmpNlAW0p/synpuf-1k_5.3_1.1.duckdb": No space left on device
--- failed re-building ‘a05_PopulationDiagnostics.Rmd’
SUMMARY: processing the following files failed:
‘a01_DatabaseDiagnostics.Rmd’ ‘a02_CodelistDiagnostics.Rmd’
‘a03_CohortDiagnostics.Rmd’ ‘a05_PopulationDiagnostics.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-macos-arm64