Last updated on 2025-03-10 18:53:12 CET.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| matrixNormal | 1 | 14 | |
| miWQS | 5 | 2 | 8 |
Current CRAN status: NOTE: 1, OK: 14
Version: 0.1.1
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘MBSP’
Flavor: r-oldrel-macos-x86_64
Current CRAN status: ERROR: 5, NOTE: 2, OK: 8
Version: 0.4.4
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
coef.wqs.Rd: glm2
estimate.wqs.Rd: glm2
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Unknown package ‘wqs’ in Rd xrefs
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.4.4
Check: examples
Result: ERROR
Running examples in ‘miWQS-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: estimate.wqs
> ### Title: Weighted Quantile Sum (WQS) Regression
> ### Aliases: estimate.wqs
> ### Keywords: imputation wqs
>
> ### ** Examples
>
> # Example 1: Binary outcome using the example simulated dataset in this package.
> data(simdata87)
> set.seed(23456)
> W.bin4 <- estimate.wqs(
+ y = simdata87$y.scenario, X = simdata87$X.true[, 1:9],
+ B = 10, family = "binomial",
+ verbose = TRUE
+ )
## Outcome Summary
Min. 1st Qu. Median Mean 3rd Qu. Max.
0.000 0.000 0.000 0.457 1.000 1.000
## Classes:
y X Z
"integer" "data.frame" "NULL"
X
alpha.chlordane dieldrin gamma.chlordane lindane
Min. :0.000e+00 Min. : 0.111 Min. : 13.51 Min. : 3.513
1st Qu.:1.110e+01 1st Qu.: 14.344 1st Qu.: 36.68 1st Qu.:11.163
Median :1.254e+02 Median : 52.536 Median : 46.35 Median :14.981
Mean :4.410e+04 Mean : 433.116 Mean : 49.35 Mean :17.174
3rd Qu.:1.682e+03 3rd Qu.: 218.957 3rd Qu.: 58.91 3rd Qu.:21.129
Max. :1.735e+07 Max. :48673.296 Max. :139.34 Max. :75.360
methoxychlor dde ddt pentachlorophenol
Min. : 17.30 Min. : 0.02 Min. : 1.382 Min. : 1.615
1st Qu.: 55.83 1st Qu.: 13.69 1st Qu.: 7.307 1st Qu.: 8.390
Median : 75.17 Median : 84.22 Median : 12.290 Median : 14.651
Mean : 83.29 Mean : 2546.60 Mean : 16.119 Mean : 20.251
3rd Qu.:101.89 3rd Qu.: 529.84 3rd Qu.: 19.398 3rd Qu.: 23.942
Max. :316.07 Max. :383567.39 Max. :178.854 Max. :285.229
pcb_105
Min. : 0.109
1st Qu.: 3.317
Median : 7.458
Mean : 16.473
3rd Qu.: 17.779
Max. :400.360
y
Min. 1st Qu. Median Mean 3rd Qu. Max.
0.000 0.000 0.000 0.457 1.000 1.000
Z
Length Class Mode
0 NULL NULL
## Place BDLs in Q1? FALSE
#> No missing values in matrix detected. Regular quantiles computed.
Error in sort.int(x, na.last = na.last, decreasing = decreasing, ...) :
'partial' index 1001 outside bounds
Calls: estimate.wqs ... quantile.default -> sort -> sort.default -> sort.int
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.4.4
Check: Rd cross-references
Result: NOTE
Unknown package ‘wqs’ in Rd xrefs
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 0.4.4
Check: examples
Result: ERROR
Running examples in ‘miWQS-Ex.R’ failed
The error most likely occurred in:
> ### Name: estimate.wqs
> ### Title: Weighted Quantile Sum (WQS) Regression
> ### Aliases: estimate.wqs
> ### Keywords: imputation wqs
>
> ### ** Examples
>
> # Example 1: Binary outcome using the example simulated dataset in this package.
> data(simdata87)
> set.seed(23456)
> W.bin4 <- estimate.wqs(
+ y = simdata87$y.scenario, X = simdata87$X.true[, 1:9],
+ B = 10, family = "binomial",
+ verbose = TRUE
+ )
## Outcome Summary
Min. 1st Qu. Median Mean 3rd Qu. Max.
0.000 0.000 0.000 0.457 1.000 1.000
## Classes:
y X Z
"integer" "data.frame" "NULL"
X
alpha.chlordane dieldrin gamma.chlordane lindane
Min. :0.000e+00 Min. : 0.111 Min. : 13.51 Min. : 3.513
1st Qu.:1.110e+01 1st Qu.: 14.344 1st Qu.: 36.68 1st Qu.:11.163
Median :1.254e+02 Median : 52.536 Median : 46.35 Median :14.981
Mean :4.410e+04 Mean : 433.116 Mean : 49.35 Mean :17.174
3rd Qu.:1.682e+03 3rd Qu.: 218.957 3rd Qu.: 58.91 3rd Qu.:21.129
Max. :1.735e+07 Max. :48673.296 Max. :139.34 Max. :75.360
methoxychlor dde ddt pentachlorophenol
Min. : 17.30 Min. : 0.02 Min. : 1.382 Min. : 1.615
1st Qu.: 55.83 1st Qu.: 13.69 1st Qu.: 7.307 1st Qu.: 8.390
Median : 75.17 Median : 84.22 Median : 12.290 Median : 14.651
Mean : 83.29 Mean : 2546.60 Mean : 16.119 Mean : 20.251
3rd Qu.:101.89 3rd Qu.: 529.84 3rd Qu.: 19.398 3rd Qu.: 23.942
Max. :316.07 Max. :383567.39 Max. :178.854 Max. :285.229
pcb_105
Min. : 0.109
1st Qu.: 3.317
Median : 7.458
Mean : 16.473
3rd Qu.: 17.779
Max. :400.360
y
Min. 1st Qu. Median Mean 3rd Qu. Max.
0.000 0.000 0.000 0.457 1.000 1.000
Z
Length Class Mode
0 NULL NULL
## Place BDLs in Q1? FALSE
#> No missing values in matrix detected. Regular quantiles computed.
Error in sort.int(x, na.last = na.last, decreasing = decreasing, ...) :
'partial' index 1001 outside bounds
Calls: estimate.wqs ... quantile.default -> sort -> sort.default -> sort.int
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64
Version: 0.4.4
Check: for detritus in the temp directory
Result: NOTE
Found the following files/directories:
‘par-7269706c6579’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.4.4
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
coef.wqs.Rd: glm2
estimate.wqs.Rd: glm2
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavor: r-devel-windows-x86_64
Version: 0.4.4
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘wqs’
Flavors: r-patched-linux-x86_64, r-release-linux-x86_64