Last updated on 2025-05-18 19:50:53 CEST.
| Package | FAIL | NOTE | OK |
|---|---|---|---|
| BGGE | 3 | 10 | |
| snpReady | 1 | 12 |
Current CRAN status: NOTE: 3, OK: 10
Version: 0.6.5
Check: LazyData
Result: NOTE
'LazyData' is specified without a 'data' directory
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: FAIL: 1, NOTE: 12
Version: 0.9.6
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘Italo Granato <italo.granato@gmail.com>’
File 'R/snpReady-internal.R' sets .Random.seed.
This is usually neither needed nor wanted.
Found the following \keyword or \concept entries
which likely give several index terms:
File ‘maize.hyb.Rd’:
\keyword{datasets;}
File ‘maize.line.Rd’:
\keyword{datasets;}
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.9.6
Check: Rd files
Result: NOTE
checkRd: (-1) maize.line.Rd:9: Lost braces in \itemize; meant \describe ?
checkRd: (-1) maize.line.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) maize.line.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) maize.line.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) raw.data.Rd:26: Lost braces; missing escapes or markup?
26 | \item{call.rate}{\code{numeric}. Threshold for removing marker by missing genotype rate. SNP with \code{call rate} below threshold are removed from dataset. Must be between {0, 1}}
| ^
checkRd: (-1) raw.data.Rd:28: Lost braces; missing escapes or markup?
28 | \item{maf}{Threshold for removing SNP by minor allele frequency. Must be between {0, 1}}
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.9.6
Check: PDF version of manual
Result: FAIL
Check process probably crashed or hung up for 20 minutes ... killed
Most likely this happened in the example checks (?),
if not, ignore the following last lines of example output:
>
> ### Name: raw.data
> ### Title: Preparation of genomic data
> ### Aliases: raw.data
>
> ### ** Examples
>
> data(maize.line)
> M <- as.matrix(maize.line)
> mrc <- raw.data(M, frame="long", base=TRUE, sweep.sample= 0.8,
+ call.rate=0.95, maf=0.05, imput=FALSE, outfile="-101")
>
>
>
>
> ### * <FOOTER>
> ###
> cleanEx()
> options(digits = 7L)
> base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n")
Time elapsed: 2.75 0.39 3.18 NA NA
> grDevices::dev.off()
null device
1
> ###
> ### Local variables: ***
> ### mode: outline-minor ***
> ### outline-regexp: "\\(> \\)?### [*]+" ***
> ### End: ***
> quit('no')
======== End of example output (where/before crash/hang up occured ?) ========
Flavor: r-release-windows-x86_64