CRAN Package Check Results for Maintainer ‘June Choe <jchoe001 at gmail.com>’

Last updated on 2024-12-18 19:49:39 CET.

Package ERROR OK
jlme 1 12
jlmerclusterperm 1 12
JuliaFormulae 13

Package jlme

Current CRAN status: ERROR: 1, OK: 12

Version: 0.4.1
Check: tests
Result: ERROR Running 'testthat.R' [136s] Running the tests in 'tests/testthat.R' failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(jlme) > > test_check("jlme") Starting Julia ... Connecting to Julia TCP server at localhost:11980 ... [1] 11980 Julia version 1.8.0 detected. No active Julia connection. Please call `jlme_setup()`. [1] FALSE julia "C:\\PROGRA~1\\Julia\\bin\\julia.exe" Starting Julia (v1.8.0) ... Activating new project at `D:\temp\2024_12_16_01_50_00_4579\jl_OwDRtQ` Updating registry at `C:\Users\CRAN\.julia\registries\General.toml` Resolving package versions... Installed ConcurrentUtilities ─ v2.4.3 Installed Distributions ─────── v0.25.114 Updating `D:\temp\2024_12_16_01_50_00_4579\jl_OwDRtQ\Project.toml` [38e38edf] + GLM v1.9.0 [ff71e718] + MixedModels v4.28.0 [3eaba693] + StatsModels v0.7.4 Updating `D:\temp\2024_12_16_01_50_00_4579\jl_OwDRtQ\Manifest.toml` [79e6a3ab] + Adapt v4.1.1 [66dad0bd] + AliasTables v1.1.3 ⌅ [4c555306] + ArrayLayouts v1.10.4 ⌅ [69666777] + Arrow v2.7.4 [31f734f8] + ArrowTypes v2.3.0 [093aae92] + BSplineKit v0.17.7 ⌅ [aae01518] + BandedMatrices v1.7.6 [6e4b80f9] + BenchmarkTools v1.5.0 [c3b6d118] + BitIntegers v0.3.2 [fa961155] + CEnum v0.5.0 [d360d2e6] + ChainRulesCore v1.25.0 [9e997f8a] + ChangesOfVariables v0.1.9 [523fee87] + CodecBzip2 v0.8.4 [5ba52731] + CodecLz4 v0.4.5 [944b1d66] + CodecZlib v0.7.6 [6b39b394] + CodecZstd v0.8.6 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.16.0 [f0e56b4a] + ConcurrentUtilities v2.4.3 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.20 [e2d170a0] + DataValueInterfaces v1.0.0 [b429d917] + DensityInterface v0.4.0 [85a47980] + Dictionaries v0.4.3 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [31c24e10] + Distributions v0.25.114 [ffbed154] + DocStringExtensions v0.9.3 [4e289a0a] + EnumX v1.0.4 [e2ba6199] + ExprTools v0.1.10 [442a2c76] + FastGaussQuadrature v1.0.2 [1a297f60] + FillArrays v1.13.0 [f6369f11] + ForwardDiff v0.10.38 [38e38edf] + GLM v1.9.0 [34004b35] + HypergeometricFunctions v0.3.25 [615f187c] + IfElse v0.1.1 [313cdc1a] + Indexing v1.1.1 [842dd82b] + InlineStrings v1.4.2 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.2 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.6.1 [682c06a0] + JSON v0.21.4 [0f8b85d8] + JSON3 v1.14.1 ⌅ [2ab3a3ac] + LogExpFunctions v0.3.28 [1914dd2f] + MacroTools v0.5.13 [b8f27783] + MathOptInterface v1.34.0 [e1d29d7a] + Missings v1.2.0 [ff71e718] + MixedModels v4.28.0 [7e9fb7ac] + MixedModelsDatasets v0.1.1 [78c3b35d] + Mocking v0.8.1 [d8a4904e] + MutableArithmetics v1.6.0 [76087f3c] + NLopt v1.1.1 [77ba4419] + NaNMath v1.0.2 [bac558e1] + OrderedCollections v1.7.0 [90014a1f] + PDMats v0.11.31 [69de0a69] + Parsers v2.8.1 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [92933f4c] + ProgressMeter v1.10.2 [43287f4e] + PtrArrays v1.2.1 [1fd47b50] + QuadGK v2.11.1 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.0 [79098fc4] + Rmath v0.8.0 [6c6a2e73] + Scratch v1.2.1 [91c51154] + SentinelArrays v1.4.8 [1277b4bf] + ShiftedArrays v2.0.0 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.0 [03a91e81] + SplitApplyCombine v1.2.3 ⌅ [aedffcd0] + Static v0.8.9 [90137ffa] + StaticArrays v1.9.8 [1e83bf80] + StaticArraysCore v1.4.3 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.4 [4c63d2b9] + StatsFuns v1.3.2 [3eaba693] + StatsModels v0.7.4 [856f2bd8] + StructTypes v1.11.0 [dc5dba14] + TZJData v1.3.0+2024b [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [f269a46b] + TimeZones v1.19.0 [3bb67fe8] + TranscodingStreams v0.11.3 [9d95f2ec] + TypedTables v1.4.6 [6e34b625] + Bzip2_jll v1.0.8+2 [5ced341a] + Lz4_jll v1.10.0+1 [079eb43e] + NLopt_jll v2.8.0+0 [efe28fd5] + OpenSpecFun_jll v0.5.5+0 [f50d1b31] + Rmath_jll v0.5.1+0 [3161d3a3] + Zstd_jll v1.5.6+1 [0dad84c5] + ArgTools v1.1.1 [56f22d72] + Artifacts [2a0f44e3] + Base64 [ade2ca70] + Dates [8ba89e20] + Distributed [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching [9fa8497b] + Future [b77e0a4c] + InteractiveUtils [4af54fe1] + LazyArtifacts [b27032c2] + LibCURL v0.6.3 [76f85450] + LibGit2 [8f399da3] + Libdl [37e2e46d] + LinearAlgebra [56ddb016] + Logging [d6f4376e] + Markdown [a63ad114] + Mmap [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.8.0 [de0858da] + Printf [9abbd945] + Profile [3fa0cd96] + REPL [9a3f8284] + Random [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization [6462fe0b] + Sockets [2f01184e] + SparseArrays [10745b16] + Statistics [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.0 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test [cf7118a7] + UUIDs [4ec0a83e] + Unicode [e66e0078] + CompilerSupportLibraries_jll v0.5.2+0 [deac9b47] + LibCURL_jll v7.84.0+0 [29816b5a] + LibSSH2_jll v1.10.2+0 [c8ffd9c3] + MbedTLS_jll v2.28.0+0 [14a3606d] + MozillaCACerts_jll v2022.2.1 [4536629a] + OpenBLAS_jll v0.3.20+0 [05823500] + OpenLibm_jll v0.8.1+0 [83775a58] + Zlib_jll v1.2.12+3 [8e850b90] + libblastrampoline_jll v5.1.1+0 [8e850ede] + nghttp2_jll v1.48.0+0 [3f19e933] + p7zip_jll v17.4.0+0 Info Packages marked with ⌅ have new versions available but cannot be upgraded. To see why use `status --outdated -m` Precompiling project... ✓ ConcurrentUtilities ✗ Distributions ✓ Arrow ✓ MixedModelsDatasets ✗ MixedModels 3 dependencies successfully precompiled in 73 seconds. 95 already precompiled. 2 dependencies errored. To see a full report either run `import Pkg; Pkg.precompile()` or load the packages ERROR: LoadError: SystemError: opening file "C:\\Users\\CRAN\\.julia\\packages\\Distributions\\gGoCk\\ext\\DistributionsChainRulesCoreExt\\DistributionsChainRulesCoreExt.jl": No such file or directory Stacktrace: [1] systemerror(p::String, errno::Int32; extrainfo::Nothing) @ Base .\error.jl:176 [2] #systemerror#80 @ .\error.jl:175 [inlined] [3] systemerror @ .\error.jl:175 [inlined] [4] open(fname::String; lock::Bool, read::Nothing, write::Nothing, create::Nothing, truncate::Nothing, append::Nothing) @ Base .\iostream.jl:293 [5] open @ .\iostream.jl:275 [inlined] [6] open(f::Base.var"#386#387"{String}, args::String; kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}}) @ Base .\io.jl:382 [7] open @ .\io.jl:381 [inlined] [8] read @ .\io.jl:462 [inlined] [9] _include(mapexpr::Function, mod::Module, _path::String) @ Base .\loading.jl:1484 [10] include(mod::Module, _path::String) @ Base .\Base.jl:419 [11] include(x::String) @ Distributions C:\Users\CRAN\.julia\packages\Distributions\gGoCk\src\Distributions.jl:1 [12] top-level scope @ C:\Users\CRAN\.julia\packages\Distributions\gGoCk\src\Distributions.jl:325 [13] include @ .\Base.jl:419 [inlined] [14] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt64}}, source::String) @ Base .\loading.jl:1554 [15] top-level scope @ stdin:1 in expression starting at C:\Users\CRAN\.julia\packages\Distributions\gGoCk\src\Distributions.jl:1 in expression starting at stdin:1 ERROR: LoadError: Failed to precompile Distributions [31c24e10-a181-5473-b8eb-7969acd0382f] to C:\Users\CRAN\.julia\compiled\v1.8\Distributions\jl_B94E.tmp. Stacktrace: [1] error(s::String) @ Base .\error.jl:35 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool) @ Base .\loading.jl:1705 [3] compilecache @ .\loading.jl:1649 [inlined] [4] _require(pkg::Base.PkgId) @ Base .\loading.jl:1337 [5] _require_prelocked(uuidkey::Base.PkgId) @ Base .\loading.jl:1200 [6] macro expansion @ .\loading.jl:1180 [inlined] [7] macro expansion @ .\lock.jl:223 [inlined] [8] require(into::Module, mod::Symbol) @ Base .\loading.jl:1144 [9] include @ .\Base.jl:419 [inlined] [10] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt64}}, source::Nothing) @ Base .\loading.jl:1554 [11] top-level scope @ stdin:1 in expression starting at C:\Users\CRAN\.julia\packages\GLM\vM20T\src\GLM.jl:1 in expression starting at stdin:1 Timing stopped at: 0.06 0.04 120.9 [ FAIL 1 | WARN 0 | SKIP 0 | PASS 14 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-model.R:11:3'): (code run outside of `test_that()`) ──────────── Error: Evaluation in Julia failed. Original Julia error message: LoadError: Failed to precompile GLM [38e38edf-8417-5370-95a0-9cbb8c7f171a] to C:\Users\CRAN\.julia\compiled\v1.8\GLM\jl_B703.tmp. Stacktrace: [1] error(s::String) @ Base .\error.jl:35 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool) @ Base .\loading.jl:1705 [3] compilecache @ .\loading.jl:1649 [inlined] [4] _require(pkg::Base.PkgId) @ Base .\loading.jl:1337 [5] _require_prelocked(uuidkey::Base.PkgId) @ Base .\loading.jl:1200 [6] macro expansion @ .\loading.jl:1180 [inlined] [7] macro expansion @ .\lock.jl:223 [inlined] [8] require(into::Module, mod::Symbol) @ Base .\loading.jl:1144 [9] eval @ .\boot.jl:368 [inlined] [10] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base .\loading.jl:1428 [11] include_string (repeats 2 times) @ .\loading.jl:1438 [inlined] [12] mainevalcmd(str::String) @ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\evaluating.jl:150 [13] invokelatest(::Any, ::Any, ::Vararg{Any}; kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}}) @ Base .\essentials.jl:729 [14] invokelatest(::Any, ::Any, ::Vararg{Any}) @ Base .\essentials.jl:726 [15] evaluate!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket}) @ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\evaluating.jl:67 [16] evaluate_checked!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket}) @ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\evaluating.jl:55 [17] serve_repl(sock::Sockets.TCPSocket) @ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\communicating.jl:185 [18] (::Main.RConnector.var"#3#5")() @ Main.RConnector .\task.jl:484 in expression starting at string:3 Backtrace: ▆ 1. ├─base::print(...) at test-model.R:10:1 2. ├─base::system.time(...) 3. └─jlme::jlme_setup(restart = TRUE, verbose = TRUE) at test-model.R:11:3 4. ├─base::do.call(.jlme_setup, params) 5. └─jlme (local) `<fn>`(add = NULL, threads = NULL, verbose = TRUE) 6. └─jlme:::load_libs(add = add) 7. └─jlme::jl("\n using StatsModels;\n using GLM;\n using MixedModels;\n ") 8. └─JuliaConnectoR::juliaEval(expr) 9. └─JuliaConnectoR::juliaCall("RConnector.mainevalcmd", expr) 10. ├─base::tryCatch(...) 11. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) 12. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 13. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) 14. └─JuliaConnectoR:::doCallJulia(funName, jlargs) 15. └─JuliaConnectoR:::handleCallbacksAndOutput() [ FAIL 1 | WARN 0 | SKIP 0 | PASS 14 ] Error: Test failures Execution halted Flavor: r-oldrel-windows-x86_64

Package jlmerclusterperm

Current CRAN status: ERROR: 1, OK: 12

Version: 1.1.4
Check: tests
Result: ERROR Running 'testthat.R' [142s] Running the tests in 'tests/testthat.R' failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(jlmerclusterperm) > > test_check("jlmerclusterperm") Julia Version 1.8.0 Commit 5544a0fab7 (2022-08-17 13:38 UTC) Platform Info: OS: Windows (x86_64-w64-mingw32) CPU: 56 × Intel(R) Xeon(R) CPU E5-2680 v4 @ 2.40GHz WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-13.0.1 (ORCJIT, broadwell) Threads: 1 on 56 virtual cores nothing ℹ Starting Julia with 2 threads ✔ Starting Julia with 2 threads [6.9s] ℹ Activating package environment ✖ Activating package environment [12.1s] i Starting Julia with 2 threads v Starting Julia with 2 threads [6.6s] i Activating package environment Precompiling project... ✗ Distributions ✗ JlmerClusterPerm 0 dependencies successfully precompiled in 37 seconds. 107 already precompiled. 2 dependencies errored. To see a full report either run `import Pkg; Pkg.precompile()` or load the packages v Activating package environment [47.9s] i Running package setup scripts (1/11) i Running package setup scripts (5/11) ERROR: LoadError: SystemError: opening file "C:\\Users\\CRAN\\.julia\\packages\\Distributions\\gGoCk\\ext\\DistributionsChainRulesCoreExt\\DistributionsChainRulesCoreExt.jl": No such file or directory Stacktrace: [1] systemerror(p::String, errno::Int32; extrainfo::Nothing) @ Base .\error.jl:176 [2] #systemerror#80 @ .\error.jl:175 [inlined] [3] systemerror @ .\error.jl:175 [inlined] [4] open(fname::String; lock::Bool, read::Nothing, write::Nothing, create::Nothing, truncate::Nothing, append::Nothing) @ Base .\iostream.jl:293 [5] open @ .\iostream.jl:275 [inlined] [6] open(f::Base.var"#386#387"{String}, args::String; kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}}) @ Base .\io.jl:382 [7] open @ .\io.jl:381 [inlined] [8] read @ .\io.jl:462 [inlined] [9] _include(mapexpr::Function, mod::Module, _path::String) @ Base .\loading.jl:1484 [10] include(mod::Module, _path::String) @ Base .\Base.jl:419 [11] include(x::String) @ Distributions C:\Users\CRAN\.julia\packages\Distributions\gGoCk\src\Distributions.jl:1 [12] top-level scope @ C:\Users\CRAN\.julia\packages\Distributions\gGoCk\src\Distributions.jl:325 [13] include @ .\Base.jl:419 [inlined] [14] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt64}}, source::Nothing) @ Base .\loading.jl:1554 [15] top-level scope @ stdin:1 in expression starting at C:\Users\CRAN\.julia\packages\Distributions\gGoCk\src\Distributions.jl:1 in expression starting at stdin:1 x Failed to compile jlmerclusterperm. Please submit an issue to <https://github.com/yjunechoe/jlmerclusterperm/issues>. i Running package setup scripts (5/11) x Running package setup scripts (6/11) [16.5s] Starting Julia ... ERROR: LoadError: SystemError: opening file "C:\\Users\\CRAN\\.julia\\packages\\Distributions\\gGoCk\\ext\\DistributionsChainRulesCoreExt\\DistributionsChainRulesCoreExt.jl": No such file or directory Stacktrace: [1] systemerror(p::String, errno::Int32; extrainfo::Nothing) @ Base .\error.jl:176 [2] #systemerror#80 @ .\error.jl:175 [inlined] [3] systemerror @ .\error.jl:175 [inlined] [4] open(fname::String; lock::Bool, read::Nothing, write::Nothing, create::Nothing, truncate::Nothing, append::Nothing) @ Base .\iostream.jl:293 [5] open @ .\iostream.jl:275 [inlined] [6] open(f::Base.var"#386#387"{String}, args::String; kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}}) @ Base .\io.jl:382 [7] open @ .\io.jl:381 [inlined] [8] read @ .\io.jl:462 [inlined] [9] _include(mapexpr::Function, mod::Module, _path::String) @ Base .\loading.jl:1484 [10] include(mod::Module, _path::String) @ Base .\Base.jl:419 [11] include(x::String) @ Distributions C:\Users\CRAN\.julia\packages\Distributions\gGoCk\src\Distributions.jl:1 [12] top-level scope @ C:\Users\CRAN\.julia\packages\Distributions\gGoCk\src\Distributions.jl:325 [13] include @ .\Base.jl:419 [inlined] [14] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt64}}, source::Nothing) @ Base .\loading.jl:1554 [15] top-level scope @ stdin:1 in expression starting at C:\Users\CRAN\.julia\packages\Distributions\gGoCk\src\Distributions.jl:1 in expression starting at stdin:1 ✖ Failed to compile jlmerclusterperm. Please submit an issue to <https://github.com/yjunechoe/jlmerclusterperm/issues>. [ FAIL 5 | WARN 0 | SKIP 7 | PASS 5 ] ══ Skipped tests (7) ═══════════════════════════════════════════════════════════ • On CRAN (7): 'test-jlmer.R:1:1', 'test-julia_rng.R:1:1', 'test-permute.R:1:1', 'test-progress.R:1:1', 'test-singularity.R:1:1', 'test-threshold_search.R:1:1', 'test-timewise_statistics.R:1:1' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-aaa-a-logging.R:7:1'): (code run outside of `test_that()`) ───── Error: Evaluation in Julia failed. Original Julia error message: LoadError: Error when installing package Distributions: IOError: rm("C:\\Users\\CRAN\\.julia\\packages\\Distributions\\gGoCk\\ext\\DistributionsChainRulesCoreExt"): directory not empty (ENOTEMPTY) Stacktrace: [1] uv_error @ .\libuv.jl:97 [inlined] [2] rm(path::String; force::Bool, recursive::Bool) @ Base.Filesystem .\file.jl:306 [3] rm(path::String; force::Bool, recursive::Bool) (repeats 2 times) @ Base.Filesystem .\file.jl:294 [4] checkfor_mv_cp_cptree(src::String, dst::String, txt::String; force::Bool) @ Base.Filesystem .\file.jl:330 [5] #mv#15 @ .\file.jl:425 [inlined] [6] install_archive(urls::Vector{Pair{String, Bool}}, hash::Base.SHA1, version_path::String; io::Base.DevNull) @ Pkg.Operations C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Operations.jl:563 [7] macro expansion @ C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Operations.jl:761 [inlined] [8] (::Pkg.Operations.var"#46#51"{Bool, Pkg.Types.Context, Tuple{SubString{String}, Dict{Base.UUID, Base.SHA1}}, Channel{Any}, Channel{NamedTuple{(:pkg, :urls, :path), Tuple{Pkg.Types.PackageEntry, Set{String}, String}}}})() @ Pkg.Operations .\task.jl:484 Stacktrace: [1] pkgerror(::String, ::Vararg{String}) @ Pkg.Types C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Types.jl:67 [2] macro expansion @ C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Operations.jl:783 [inlined] [3] macro expansion @ .\task.jl:454 [inlined] [4] download_source(ctx::Pkg.Types.Context; readonly::Bool) @ Pkg.Operations C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Operations.jl:724 [5] download_source @ C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Operations.jl:700 [inlined] [6] develop(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}, new_git::Set{Base.UUID}; preserve::Pkg.Types.PreserveLevel, platform::Base.BinaryPlatforms.Platform) @ Pkg.Operations C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Operations.jl:1300 [7] develop(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; shared::Bool, preserve::Pkg.Types.PreserveLevel, platform::Base.BinaryPlatforms.Platform, kwargs::Base.Pairs{Symbol, Base.DevNull, Tuple{Symbol}, NamedTuple{(:io,), Tuple{Base.DevNull}}}) @ Pkg.API C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\API.jl:222 [8] develop(pkgs::Vector{Pkg.Types.PackageSpec}; io::Base.DevNull, kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}}) @ Pkg.API C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\API.jl:156 [9] #develop#14 @ C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\API.jl:143 [inlined] [10] develop(; name::Nothing, uuid::Nothing, version::Nothing, url::Nothing, rev::Nothing, path::String, mode::Pkg.Types.PackageMode, subdir::Nothing, kwargs::Base.Pairs{Symbol, Base.DevNull, Tuple{Symbol}, NamedTuple{(:io,), Tuple{Base.DevNull}}}) @ Pkg.API C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\API.jl:173 [11] top-level scope @ string:1 [12] eval @ .\boot.jl:368 [inlined] [13] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base .\loading.jl:1428 [14] include_string (repeats 2 times) @ .\loading.jl:1438 [inlined] [15] mainevalcmd(str::String) @ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\evaluating.jl:150 [16] invokelatest(::Any, ::Any, ::Vararg{Any}; kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}}) @ Base .\essentials.jl:729 [17] invokelatest(::Any, ::Any, ::Vararg{Any}) @ Base .\essentials.jl:726 [18] evaluate!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket}) @ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\evaluating.jl:67 [19] evaluate_checked!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket}) @ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\evaluating.jl:55 [20] serve_repl(sock::Sockets.TCPSocket) @ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\communicating.jl:185 [21] (::Main.RConnector.var"#3#5")() @ Main.RConnector .\task.jl:484 in expression starting at string:1 Backtrace: ▆ 1. └─jlmerclusterperm:::set_projenv(cache_dir = tempdir(), verbose = TRUE) at test-aaa-a-logging.R:7:1 2. └─JuliaConnectoR::juliaEval("Pkg.develop(path = \"JlmerClusterPerm\", io = devnull)") 3. └─JuliaConnectoR::juliaCall("RConnector.mainevalcmd", expr) 4. ├─base::tryCatch(...) 5. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) 6. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 7. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) 8. └─JuliaConnectoR:::doCallJulia(funName, jlargs) 9. └─JuliaConnectoR:::handleCallbacksAndOutput() ── Error ('test-aaa-b-setup.R:7:3'): Setup with seed works (use 2 for testing) ── Error: Evaluation in Julia failed. Original Julia error message: LoadError: Failed to precompile Distributions [31c24e10-a181-5473-b8eb-7969acd0382f] to C:\Users\CRAN\.julia\compiled\v1.8\Distributions\jl_5C0D.tmp. Stacktrace: [1] error(s::String) @ Base .\error.jl:35 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool) @ Base .\loading.jl:1705 [3] compilecache @ .\loading.jl:1649 [inlined] [4] _require(pkg::Base.PkgId) @ Base .\loading.jl:1337 [5] _require_prelocked(uuidkey::Base.PkgId) @ Base .\loading.jl:1200 [6] macro expansion @ .\loading.jl:1180 [inlined] [7] macro expansion @ .\lock.jl:223 [inlined] [8] require(into::Module, mod::Symbol) @ Base .\loading.jl:1144 [9] eval @ .\boot.jl:368 [inlined] [10] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base .\loading.jl:1428 [11] include_string (repeats 2 times) @ .\loading.jl:1438 [inlined] [12] mainevalcmd(str::String) @ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\evaluating.jl:150 [13] invokelatest(::Any, ::Any, ::Vararg{Any}; kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}}) @ Base .\essentials.jl:729 [14] invokelatest(::Any, ::Any, ::Vararg{Any}) @ Base .\essentials.jl:726 [15] evaluate!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket}) @ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\evaluating.jl:67 [16] evaluate_checked!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket}) @ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\evaluating.jl:55 [17] serve_repl(sock::Sockets.TCPSocket) @ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\communicating.jl:185 [18] (::Main.RConnector.var"#3#5")() @ Main.RConnector .\task.jl:484 in expression starting at string:1 Backtrace: ▆ 1. ├─testthat::expect_true(...) at test-aaa-b-setup.R:7:3 2. │ └─testthat::quasi_label(enquo(object), label, arg = "object") 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. └─jlmerclusterperm::jlmerclusterperm_setup(...) 5. └─jlmerclusterperm:::setup_with_progress(...) 6. ├─base::withCallingHandlers(...) 7. └─jlmerclusterperm:::source_jl(verbose = verbose) 8. └─JuliaConnectoR::juliaEval(jl_pkgs[i]) 9. └─JuliaConnectoR::juliaCall("RConnector.mainevalcmd", expr) 10. ├─base::tryCatch(...) 11. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) 12. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 13. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) 14. └─JuliaConnectoR:::doCallJulia(funName, jlargs) 15. └─JuliaConnectoR:::handleCallbacksAndOutput() ── Failure ('test-aaa-b-setup.R:13:3'): RNG initializes to seed=1 counter=0 ──── get_rng_seed() (`actual`) not equal to 1 (`expected`). `actual` is NULL `expected` is a double vector (1) ── Error ('test-aaa-b-setup.R:14:3'): RNG initializes to seed=1 counter=0 ────── Error: Evaluation in Julia failed. Original Julia error message: LoadError: UndefVarError: rng not defined Stacktrace: [1] top-level scope @ string:1 [2] eval @ .\boot.jl:368 [inlined] [3] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base .\loading.jl:1428 [4] include_string (repeats 2 times) @ .\loading.jl:1438 [inlined] [5] mainevalcmd(str::String) @ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\evaluating.jl:150 [6] invokelatest(::Any, ::Any, ::Vararg{Any}; kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}}) @ Base .\essentials.jl:729 [7] invokelatest(::Any, ::Any, ::Vararg{Any}) @ Base .\essentials.jl:726 [8] evaluate!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket}) @ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\evaluating.jl:67 [9] evaluate_checked!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket}) @ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\evaluating.jl:55 [10] serve_repl(sock::Sockets.TCPSocket) @ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\communicating.jl:185 [11] serve(port_hint::Int64; multiclient::Bool, portfile::String) @ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\communicating.jl:152 [12] top-level scope @ D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\main.jl:23 [13] include(mod::Module, _path::String) @ Base .\Base.jl:419 [14] exec_options(opts::Base.JLOptions) @ Base .\client.jl:303 [15] _start() @ Base .\client.jl:522 in expression starting at string:1 Backtrace: ▆ 1. ├─testthat::expect_equal(get_rng_state(), 0) at test-aaa-b-setup.R:14:3 2. │ └─testthat::quasi_label(enquo(object), label, arg = "object") 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. └─jlmerclusterperm::get_rng_state() 5. └─JuliaConnectoR::juliaEval("Int(rng.ctr1)") 6. └─JuliaConnectoR::juliaCall("RConnector.mainevalcmd", expr) 7. ├─base::tryCatch(...) 8. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) 9. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 10. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) 11. └─JuliaConnectoR:::doCallJulia(funName, jlargs) 12. └─JuliaConnectoR:::handleCallbacksAndOutput() ── Error ('test-clusterpermute.R:3:1'): (code run outside of `test_that()`) ──── Error: Evaluation in Julia failed. Original Julia error message: LoadError: Failed to precompile Distributions [31c24e10-a181-5473-b8eb-7969acd0382f] to C:\Users\CRAN\.julia\compiled\v1.8\Distributions\jl_7DC.tmp. Stacktrace: [1] error(s::String) @ Base .\error.jl:35 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool) @ Base .\loading.jl:1705 [3] compilecache @ .\loading.jl:1649 [inlined] [4] _require(pkg::Base.PkgId) @ Base .\loading.jl:1337 [5] _require_prelocked(uuidkey::Base.PkgId) @ Base .\loading.jl:1200 [6] macro expansion @ .\loading.jl:1180 [inlined] [7] macro expansion @ .\lock.jl:223 [inlined] [8] require(into::Module, mod::Symbol) @ Base .\loading.jl:1144 [9] eval @ .\boot.jl:368 [inlined] [10] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base .\loading.jl:1428 [11] include_string (repeats 2 times) @ .\loading.jl:1438 [inlined] [12] mainevalcmd(str::String) @ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\evaluating.jl:150 [13] invokelatest(::Any, ::Any, ::Vararg{Any}; kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}}) @ Base .\essentials.jl:729 [14] invokelatest(::Any, ::Any, ::Vararg{Any}) @ Base .\essentials.jl:726 [15] evaluate!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket}) @ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\evaluating.jl:67 [16] evaluate_checked!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket}) @ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\evaluating.jl:55 [17] serve_repl(sock::Sockets.TCPSocket) @ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\communicating.jl:185 [18] (::Main.RConnector.var"#3#5")() @ Main.RConnector .\task.jl:484 in expression starting at string:1 Backtrace: ▆ 1. └─jlmerclusterperm::jlmerclusterperm_setup(...) at test-clusterpermute.R:3:1 2. └─jlmerclusterperm:::setup_with_progress(...) 3. ├─base::withCallingHandlers(...) 4. └─jlmerclusterperm:::source_jl(verbose = verbose) 5. └─JuliaConnectoR::juliaEval(jl_pkgs[i]) 6. └─JuliaConnectoR::juliaCall("RConnector.mainevalcmd", expr) 7. ├─base::tryCatch(...) 8. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) 9. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 10. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) 11. └─JuliaConnectoR:::doCallJulia(funName, jlargs) 12. └─JuliaConnectoR:::handleCallbacksAndOutput() [ FAIL 5 | WARN 0 | SKIP 7 | PASS 5 ] Error: Test failures Execution halted Flavor: r-oldrel-windows-x86_64

Package JuliaFormulae

Current CRAN status: OK: 13