Last updated on 2024-12-18 19:49:39 CET.
| Package | ERROR | OK |
|---|---|---|
| jlme | 1 | 12 |
| jlmerclusterperm | 1 | 12 |
| JuliaFormulae | 13 |
Current CRAN status: ERROR: 1, OK: 12
Version: 0.4.1
Check: tests
Result: ERROR
Running 'testthat.R' [136s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(jlme)
>
> test_check("jlme")
Starting Julia ...
Connecting to Julia TCP server at localhost:11980 ...
[1] 11980
Julia version 1.8.0 detected.
No active Julia connection. Please call `jlme_setup()`.
[1] FALSE
julia
"C:\\PROGRA~1\\Julia\\bin\\julia.exe"
Starting Julia (v1.8.0) ...
Activating new project at `D:\temp\2024_12_16_01_50_00_4579\jl_OwDRtQ`
Updating registry at `C:\Users\CRAN\.julia\registries\General.toml`
Resolving package versions...
Installed ConcurrentUtilities ─ v2.4.3
Installed Distributions ─────── v0.25.114
Updating `D:\temp\2024_12_16_01_50_00_4579\jl_OwDRtQ\Project.toml`
[38e38edf] + GLM v1.9.0
[ff71e718] + MixedModels v4.28.0
[3eaba693] + StatsModels v0.7.4
Updating `D:\temp\2024_12_16_01_50_00_4579\jl_OwDRtQ\Manifest.toml`
[79e6a3ab] + Adapt v4.1.1
[66dad0bd] + AliasTables v1.1.3
⌅ [4c555306] + ArrayLayouts v1.10.4
⌅ [69666777] + Arrow v2.7.4
[31f734f8] + ArrowTypes v2.3.0
[093aae92] + BSplineKit v0.17.7
⌅ [aae01518] + BandedMatrices v1.7.6
[6e4b80f9] + BenchmarkTools v1.5.0
[c3b6d118] + BitIntegers v0.3.2
[fa961155] + CEnum v0.5.0
[d360d2e6] + ChainRulesCore v1.25.0
[9e997f8a] + ChangesOfVariables v0.1.9
[523fee87] + CodecBzip2 v0.8.4
[5ba52731] + CodecLz4 v0.4.5
[944b1d66] + CodecZlib v0.7.6
[6b39b394] + CodecZstd v0.8.6
[bbf7d656] + CommonSubexpressions v0.3.1
[34da2185] + Compat v4.16.0
[f0e56b4a] + ConcurrentUtilities v2.4.3
[9a962f9c] + DataAPI v1.16.0
[864edb3b] + DataStructures v0.18.20
[e2d170a0] + DataValueInterfaces v1.0.0
[b429d917] + DensityInterface v0.4.0
[85a47980] + Dictionaries v0.4.3
[163ba53b] + DiffResults v1.1.0
[b552c78f] + DiffRules v1.15.1
[31c24e10] + Distributions v0.25.114
[ffbed154] + DocStringExtensions v0.9.3
[4e289a0a] + EnumX v1.0.4
[e2ba6199] + ExprTools v0.1.10
[442a2c76] + FastGaussQuadrature v1.0.2
[1a297f60] + FillArrays v1.13.0
[f6369f11] + ForwardDiff v0.10.38
[38e38edf] + GLM v1.9.0
[34004b35] + HypergeometricFunctions v0.3.25
[615f187c] + IfElse v0.1.1
[313cdc1a] + Indexing v1.1.1
[842dd82b] + InlineStrings v1.4.2
[3587e190] + InverseFunctions v0.1.17
[92d709cd] + IrrationalConstants v0.2.2
[82899510] + IteratorInterfaceExtensions v1.0.0
[692b3bcd] + JLLWrappers v1.6.1
[682c06a0] + JSON v0.21.4
[0f8b85d8] + JSON3 v1.14.1
⌅ [2ab3a3ac] + LogExpFunctions v0.3.28
[1914dd2f] + MacroTools v0.5.13
[b8f27783] + MathOptInterface v1.34.0
[e1d29d7a] + Missings v1.2.0
[ff71e718] + MixedModels v4.28.0
[7e9fb7ac] + MixedModelsDatasets v0.1.1
[78c3b35d] + Mocking v0.8.1
[d8a4904e] + MutableArithmetics v1.6.0
[76087f3c] + NLopt v1.1.1
[77ba4419] + NaNMath v1.0.2
[bac558e1] + OrderedCollections v1.7.0
[90014a1f] + PDMats v0.11.31
[69de0a69] + Parsers v2.8.1
[2dfb63ee] + PooledArrays v1.4.3
[aea7be01] + PrecompileTools v1.2.1
[21216c6a] + Preferences v1.4.3
[92933f4c] + ProgressMeter v1.10.2
[43287f4e] + PtrArrays v1.2.1
[1fd47b50] + QuadGK v2.11.1
[3cdcf5f2] + RecipesBase v1.3.4
[189a3867] + Reexport v1.2.2
[ae029012] + Requires v1.3.0
[79098fc4] + Rmath v0.8.0
[6c6a2e73] + Scratch v1.2.1
[91c51154] + SentinelArrays v1.4.8
[1277b4bf] + ShiftedArrays v2.0.0
[a2af1166] + SortingAlgorithms v1.2.1
[276daf66] + SpecialFunctions v2.5.0
[03a91e81] + SplitApplyCombine v1.2.3
⌅ [aedffcd0] + Static v0.8.9
[90137ffa] + StaticArrays v1.9.8
[1e83bf80] + StaticArraysCore v1.4.3
[82ae8749] + StatsAPI v1.7.0
[2913bbd2] + StatsBase v0.34.4
[4c63d2b9] + StatsFuns v1.3.2
[3eaba693] + StatsModels v0.7.4
[856f2bd8] + StructTypes v1.11.0
[dc5dba14] + TZJData v1.3.0+2024b
[3783bdb8] + TableTraits v1.0.1
[bd369af6] + Tables v1.12.0
[f269a46b] + TimeZones v1.19.0
[3bb67fe8] + TranscodingStreams v0.11.3
[9d95f2ec] + TypedTables v1.4.6
[6e34b625] + Bzip2_jll v1.0.8+2
[5ced341a] + Lz4_jll v1.10.0+1
[079eb43e] + NLopt_jll v2.8.0+0
[efe28fd5] + OpenSpecFun_jll v0.5.5+0
[f50d1b31] + Rmath_jll v0.5.1+0
[3161d3a3] + Zstd_jll v1.5.6+1
[0dad84c5] + ArgTools v1.1.1
[56f22d72] + Artifacts
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8ba89e20] + Distributed
[f43a241f] + Downloads v1.6.0
[7b1f6079] + FileWatching
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[4af54fe1] + LazyArtifacts
[b27032c2] + LibCURL v0.6.3
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[ca575930] + NetworkOptions v1.2.0
[44cfe95a] + Pkg v1.8.0
[de0858da] + Printf
[9abbd945] + Profile
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA v0.7.0
[9e88b42a] + Serialization
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[fa267f1f] + TOML v1.0.0
[a4e569a6] + Tar v1.10.0
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
[e66e0078] + CompilerSupportLibraries_jll v0.5.2+0
[deac9b47] + LibCURL_jll v7.84.0+0
[29816b5a] + LibSSH2_jll v1.10.2+0
[c8ffd9c3] + MbedTLS_jll v2.28.0+0
[14a3606d] + MozillaCACerts_jll v2022.2.1
[4536629a] + OpenBLAS_jll v0.3.20+0
[05823500] + OpenLibm_jll v0.8.1+0
[83775a58] + Zlib_jll v1.2.12+3
[8e850b90] + libblastrampoline_jll v5.1.1+0
[8e850ede] + nghttp2_jll v1.48.0+0
[3f19e933] + p7zip_jll v17.4.0+0
Info Packages marked with ⌅ have new versions available but cannot be upgraded. To see why use `status --outdated -m`
Precompiling project...
✓ ConcurrentUtilities
✗ Distributions
✓ Arrow
✓ MixedModelsDatasets
✗ MixedModels
3 dependencies successfully precompiled in 73 seconds. 95 already precompiled.
2 dependencies errored. To see a full report either run `import Pkg; Pkg.precompile()` or load the packages
ERROR: LoadError: SystemError: opening file "C:\\Users\\CRAN\\.julia\\packages\\Distributions\\gGoCk\\ext\\DistributionsChainRulesCoreExt\\DistributionsChainRulesCoreExt.jl": No such file or directory
Stacktrace:
[1] systemerror(p::String, errno::Int32; extrainfo::Nothing)
@ Base .\error.jl:176
[2] #systemerror#80
@ .\error.jl:175 [inlined]
[3] systemerror
@ .\error.jl:175 [inlined]
[4] open(fname::String; lock::Bool, read::Nothing, write::Nothing, create::Nothing, truncate::Nothing, append::Nothing)
@ Base .\iostream.jl:293
[5] open
@ .\iostream.jl:275 [inlined]
[6] open(f::Base.var"#386#387"{String}, args::String; kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Base .\io.jl:382
[7] open
@ .\io.jl:381 [inlined]
[8] read
@ .\io.jl:462 [inlined]
[9] _include(mapexpr::Function, mod::Module, _path::String)
@ Base .\loading.jl:1484
[10] include(mod::Module, _path::String)
@ Base .\Base.jl:419
[11] include(x::String)
@ Distributions C:\Users\CRAN\.julia\packages\Distributions\gGoCk\src\Distributions.jl:1
[12] top-level scope
@ C:\Users\CRAN\.julia\packages\Distributions\gGoCk\src\Distributions.jl:325
[13] include
@ .\Base.jl:419 [inlined]
[14] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt64}}, source::String)
@ Base .\loading.jl:1554
[15] top-level scope
@ stdin:1
in expression starting at C:\Users\CRAN\.julia\packages\Distributions\gGoCk\src\Distributions.jl:1
in expression starting at stdin:1
ERROR: LoadError: Failed to precompile Distributions [31c24e10-a181-5473-b8eb-7969acd0382f] to C:\Users\CRAN\.julia\compiled\v1.8\Distributions\jl_B94E.tmp.
Stacktrace:
[1] error(s::String)
@ Base .\error.jl:35
[2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool)
@ Base .\loading.jl:1705
[3] compilecache
@ .\loading.jl:1649 [inlined]
[4] _require(pkg::Base.PkgId)
@ Base .\loading.jl:1337
[5] _require_prelocked(uuidkey::Base.PkgId)
@ Base .\loading.jl:1200
[6] macro expansion
@ .\loading.jl:1180 [inlined]
[7] macro expansion
@ .\lock.jl:223 [inlined]
[8] require(into::Module, mod::Symbol)
@ Base .\loading.jl:1144
[9] include
@ .\Base.jl:419 [inlined]
[10] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt64}}, source::Nothing)
@ Base .\loading.jl:1554
[11] top-level scope
@ stdin:1
in expression starting at C:\Users\CRAN\.julia\packages\GLM\vM20T\src\GLM.jl:1
in expression starting at stdin:1
Timing stopped at: 0.06 0.04 120.9
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 14 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-model.R:11:3'): (code run outside of `test_that()`) ────────────
Error: Evaluation in Julia failed.
Original Julia error message:
LoadError: Failed to precompile GLM [38e38edf-8417-5370-95a0-9cbb8c7f171a] to C:\Users\CRAN\.julia\compiled\v1.8\GLM\jl_B703.tmp.
Stacktrace:
[1] error(s::String)
@ Base .\error.jl:35
[2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool)
@ Base .\loading.jl:1705
[3] compilecache
@ .\loading.jl:1649 [inlined]
[4] _require(pkg::Base.PkgId)
@ Base .\loading.jl:1337
[5] _require_prelocked(uuidkey::Base.PkgId)
@ Base .\loading.jl:1200
[6] macro expansion
@ .\loading.jl:1180 [inlined]
[7] macro expansion
@ .\lock.jl:223 [inlined]
[8] require(into::Module, mod::Symbol)
@ Base .\loading.jl:1144
[9] eval
@ .\boot.jl:368 [inlined]
[10] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
@ Base .\loading.jl:1428
[11] include_string (repeats 2 times)
@ .\loading.jl:1438 [inlined]
[12] mainevalcmd(str::String)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\evaluating.jl:150
[13] invokelatest(::Any, ::Any, ::Vararg{Any}; kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Base .\essentials.jl:729
[14] invokelatest(::Any, ::Any, ::Vararg{Any})
@ Base .\essentials.jl:726
[15] evaluate!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket})
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\evaluating.jl:67
[16] evaluate_checked!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket})
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\evaluating.jl:55
[17] serve_repl(sock::Sockets.TCPSocket)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\communicating.jl:185
[18] (::Main.RConnector.var"#3#5")()
@ Main.RConnector .\task.jl:484
in expression starting at string:3
Backtrace:
▆
1. ├─base::print(...) at test-model.R:10:1
2. ├─base::system.time(...)
3. └─jlme::jlme_setup(restart = TRUE, verbose = TRUE) at test-model.R:11:3
4. ├─base::do.call(.jlme_setup, params)
5. └─jlme (local) `<fn>`(add = NULL, threads = NULL, verbose = TRUE)
6. └─jlme:::load_libs(add = add)
7. └─jlme::jl("\n using StatsModels;\n using GLM;\n using MixedModels;\n ")
8. └─JuliaConnectoR::juliaEval(expr)
9. └─JuliaConnectoR::juliaCall("RConnector.mainevalcmd", expr)
10. ├─base::tryCatch(...)
11. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
12. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
13. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
14. └─JuliaConnectoR:::doCallJulia(funName, jlargs)
15. └─JuliaConnectoR:::handleCallbacksAndOutput()
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 14 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-windows-x86_64
Current CRAN status: ERROR: 1, OK: 12
Version: 1.1.4
Check: tests
Result: ERROR
Running 'testthat.R' [142s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(jlmerclusterperm)
>
> test_check("jlmerclusterperm")
Julia Version 1.8.0
Commit 5544a0fab7 (2022-08-17 13:38 UTC)
Platform Info:
OS: Windows (x86_64-w64-mingw32)
CPU: 56 × Intel(R) Xeon(R) CPU E5-2680 v4 @ 2.40GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-13.0.1 (ORCJIT, broadwell)
Threads: 1 on 56 virtual cores
nothing
ℹ Starting Julia with 2 threads
✔ Starting Julia with 2 threads [6.9s]
ℹ Activating package environment
✖ Activating package environment [12.1s]
i Starting Julia with 2 threads
v Starting Julia with 2 threads [6.6s]
i Activating package environment
Precompiling project...
✗ Distributions
✗ JlmerClusterPerm
0 dependencies successfully precompiled in 37 seconds. 107 already precompiled.
2 dependencies errored. To see a full report either run `import Pkg; Pkg.precompile()` or load the packages
v Activating package environment [47.9s]
i Running package setup scripts (1/11)
i Running package setup scripts (5/11)
ERROR: LoadError: SystemError: opening file "C:\\Users\\CRAN\\.julia\\packages\\Distributions\\gGoCk\\ext\\DistributionsChainRulesCoreExt\\DistributionsChainRulesCoreExt.jl": No such file or directory
Stacktrace:
[1] systemerror(p::String, errno::Int32; extrainfo::Nothing)
@ Base .\error.jl:176
[2] #systemerror#80
@ .\error.jl:175 [inlined]
[3] systemerror
@ .\error.jl:175 [inlined]
[4] open(fname::String; lock::Bool, read::Nothing, write::Nothing, create::Nothing, truncate::Nothing, append::Nothing)
@ Base .\iostream.jl:293
[5] open
@ .\iostream.jl:275 [inlined]
[6] open(f::Base.var"#386#387"{String}, args::String; kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Base .\io.jl:382
[7] open
@ .\io.jl:381 [inlined]
[8] read
@ .\io.jl:462 [inlined]
[9] _include(mapexpr::Function, mod::Module, _path::String)
@ Base .\loading.jl:1484
[10] include(mod::Module, _path::String)
@ Base .\Base.jl:419
[11] include(x::String)
@ Distributions C:\Users\CRAN\.julia\packages\Distributions\gGoCk\src\Distributions.jl:1
[12] top-level scope
@ C:\Users\CRAN\.julia\packages\Distributions\gGoCk\src\Distributions.jl:325
[13] include
@ .\Base.jl:419 [inlined]
[14] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt64}}, source::Nothing)
@ Base .\loading.jl:1554
[15] top-level scope
@ stdin:1
in expression starting at C:\Users\CRAN\.julia\packages\Distributions\gGoCk\src\Distributions.jl:1
in expression starting at stdin:1
x Failed to compile jlmerclusterperm. Please submit an issue to <https://github.com/yjunechoe/jlmerclusterperm/issues>.
i Running package setup scripts (5/11)
x Running package setup scripts (6/11) [16.5s]
Starting Julia ...
ERROR: LoadError: SystemError: opening file "C:\\Users\\CRAN\\.julia\\packages\\Distributions\\gGoCk\\ext\\DistributionsChainRulesCoreExt\\DistributionsChainRulesCoreExt.jl": No such file or directory
Stacktrace:
[1] systemerror(p::String, errno::Int32; extrainfo::Nothing)
@ Base .\error.jl:176
[2] #systemerror#80
@ .\error.jl:175 [inlined]
[3] systemerror
@ .\error.jl:175 [inlined]
[4] open(fname::String; lock::Bool, read::Nothing, write::Nothing, create::Nothing, truncate::Nothing, append::Nothing)
@ Base .\iostream.jl:293
[5] open
@ .\iostream.jl:275 [inlined]
[6] open(f::Base.var"#386#387"{String}, args::String; kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Base .\io.jl:382
[7] open
@ .\io.jl:381 [inlined]
[8] read
@ .\io.jl:462 [inlined]
[9] _include(mapexpr::Function, mod::Module, _path::String)
@ Base .\loading.jl:1484
[10] include(mod::Module, _path::String)
@ Base .\Base.jl:419
[11] include(x::String)
@ Distributions C:\Users\CRAN\.julia\packages\Distributions\gGoCk\src\Distributions.jl:1
[12] top-level scope
@ C:\Users\CRAN\.julia\packages\Distributions\gGoCk\src\Distributions.jl:325
[13] include
@ .\Base.jl:419 [inlined]
[14] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt64}}, source::Nothing)
@ Base .\loading.jl:1554
[15] top-level scope
@ stdin:1
in expression starting at C:\Users\CRAN\.julia\packages\Distributions\gGoCk\src\Distributions.jl:1
in expression starting at stdin:1
✖ Failed to compile jlmerclusterperm. Please submit an issue to <https://github.com/yjunechoe/jlmerclusterperm/issues>.
[ FAIL 5 | WARN 0 | SKIP 7 | PASS 5 ]
══ Skipped tests (7) ═══════════════════════════════════════════════════════════
• On CRAN (7): 'test-jlmer.R:1:1', 'test-julia_rng.R:1:1',
'test-permute.R:1:1', 'test-progress.R:1:1', 'test-singularity.R:1:1',
'test-threshold_search.R:1:1', 'test-timewise_statistics.R:1:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-aaa-a-logging.R:7:1'): (code run outside of `test_that()`) ─────
Error: Evaluation in Julia failed.
Original Julia error message:
LoadError: Error when installing package Distributions:
IOError: rm("C:\\Users\\CRAN\\.julia\\packages\\Distributions\\gGoCk\\ext\\DistributionsChainRulesCoreExt"): directory not empty (ENOTEMPTY)
Stacktrace:
[1] uv_error
@ .\libuv.jl:97 [inlined]
[2] rm(path::String; force::Bool, recursive::Bool)
@ Base.Filesystem .\file.jl:306
[3] rm(path::String; force::Bool, recursive::Bool) (repeats 2 times)
@ Base.Filesystem .\file.jl:294
[4] checkfor_mv_cp_cptree(src::String, dst::String, txt::String; force::Bool)
@ Base.Filesystem .\file.jl:330
[5] #mv#15
@ .\file.jl:425 [inlined]
[6] install_archive(urls::Vector{Pair{String, Bool}}, hash::Base.SHA1, version_path::String; io::Base.DevNull)
@ Pkg.Operations C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Operations.jl:563
[7] macro expansion
@ C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Operations.jl:761 [inlined]
[8] (::Pkg.Operations.var"#46#51"{Bool, Pkg.Types.Context, Tuple{SubString{String}, Dict{Base.UUID, Base.SHA1}}, Channel{Any}, Channel{NamedTuple{(:pkg, :urls, :path), Tuple{Pkg.Types.PackageEntry, Set{String}, String}}}})()
@ Pkg.Operations .\task.jl:484
Stacktrace:
[1] pkgerror(::String, ::Vararg{String})
@ Pkg.Types C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Types.jl:67
[2] macro expansion
@ C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Operations.jl:783 [inlined]
[3] macro expansion
@ .\task.jl:454 [inlined]
[4] download_source(ctx::Pkg.Types.Context; readonly::Bool)
@ Pkg.Operations C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Operations.jl:724
[5] download_source
@ C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Operations.jl:700 [inlined]
[6] develop(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}, new_git::Set{Base.UUID}; preserve::Pkg.Types.PreserveLevel, platform::Base.BinaryPlatforms.Platform)
@ Pkg.Operations C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Operations.jl:1300
[7] develop(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; shared::Bool, preserve::Pkg.Types.PreserveLevel, platform::Base.BinaryPlatforms.Platform, kwargs::Base.Pairs{Symbol, Base.DevNull, Tuple{Symbol}, NamedTuple{(:io,), Tuple{Base.DevNull}}})
@ Pkg.API C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\API.jl:222
[8] develop(pkgs::Vector{Pkg.Types.PackageSpec}; io::Base.DevNull, kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Pkg.API C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\API.jl:156
[9] #develop#14
@ C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\API.jl:143 [inlined]
[10] develop(; name::Nothing, uuid::Nothing, version::Nothing, url::Nothing, rev::Nothing, path::String, mode::Pkg.Types.PackageMode, subdir::Nothing, kwargs::Base.Pairs{Symbol, Base.DevNull, Tuple{Symbol}, NamedTuple{(:io,), Tuple{Base.DevNull}}})
@ Pkg.API C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\API.jl:173
[11] top-level scope
@ string:1
[12] eval
@ .\boot.jl:368 [inlined]
[13] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
@ Base .\loading.jl:1428
[14] include_string (repeats 2 times)
@ .\loading.jl:1438 [inlined]
[15] mainevalcmd(str::String)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\evaluating.jl:150
[16] invokelatest(::Any, ::Any, ::Vararg{Any}; kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Base .\essentials.jl:729
[17] invokelatest(::Any, ::Any, ::Vararg{Any})
@ Base .\essentials.jl:726
[18] evaluate!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket})
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\evaluating.jl:67
[19] evaluate_checked!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket})
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\evaluating.jl:55
[20] serve_repl(sock::Sockets.TCPSocket)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\communicating.jl:185
[21] (::Main.RConnector.var"#3#5")()
@ Main.RConnector .\task.jl:484
in expression starting at string:1
Backtrace:
▆
1. └─jlmerclusterperm:::set_projenv(cache_dir = tempdir(), verbose = TRUE) at test-aaa-a-logging.R:7:1
2. └─JuliaConnectoR::juliaEval("Pkg.develop(path = \"JlmerClusterPerm\", io = devnull)")
3. └─JuliaConnectoR::juliaCall("RConnector.mainevalcmd", expr)
4. ├─base::tryCatch(...)
5. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
6. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
7. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
8. └─JuliaConnectoR:::doCallJulia(funName, jlargs)
9. └─JuliaConnectoR:::handleCallbacksAndOutput()
── Error ('test-aaa-b-setup.R:7:3'): Setup with seed works (use 2 for testing) ──
Error: Evaluation in Julia failed.
Original Julia error message:
LoadError: Failed to precompile Distributions [31c24e10-a181-5473-b8eb-7969acd0382f] to C:\Users\CRAN\.julia\compiled\v1.8\Distributions\jl_5C0D.tmp.
Stacktrace:
[1] error(s::String)
@ Base .\error.jl:35
[2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool)
@ Base .\loading.jl:1705
[3] compilecache
@ .\loading.jl:1649 [inlined]
[4] _require(pkg::Base.PkgId)
@ Base .\loading.jl:1337
[5] _require_prelocked(uuidkey::Base.PkgId)
@ Base .\loading.jl:1200
[6] macro expansion
@ .\loading.jl:1180 [inlined]
[7] macro expansion
@ .\lock.jl:223 [inlined]
[8] require(into::Module, mod::Symbol)
@ Base .\loading.jl:1144
[9] eval
@ .\boot.jl:368 [inlined]
[10] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
@ Base .\loading.jl:1428
[11] include_string (repeats 2 times)
@ .\loading.jl:1438 [inlined]
[12] mainevalcmd(str::String)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\evaluating.jl:150
[13] invokelatest(::Any, ::Any, ::Vararg{Any}; kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Base .\essentials.jl:729
[14] invokelatest(::Any, ::Any, ::Vararg{Any})
@ Base .\essentials.jl:726
[15] evaluate!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket})
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\evaluating.jl:67
[16] evaluate_checked!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket})
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\evaluating.jl:55
[17] serve_repl(sock::Sockets.TCPSocket)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\communicating.jl:185
[18] (::Main.RConnector.var"#3#5")()
@ Main.RConnector .\task.jl:484
in expression starting at string:1
Backtrace:
▆
1. ├─testthat::expect_true(...) at test-aaa-b-setup.R:7:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─jlmerclusterperm::jlmerclusterperm_setup(...)
5. └─jlmerclusterperm:::setup_with_progress(...)
6. ├─base::withCallingHandlers(...)
7. └─jlmerclusterperm:::source_jl(verbose = verbose)
8. └─JuliaConnectoR::juliaEval(jl_pkgs[i])
9. └─JuliaConnectoR::juliaCall("RConnector.mainevalcmd", expr)
10. ├─base::tryCatch(...)
11. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
12. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
13. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
14. └─JuliaConnectoR:::doCallJulia(funName, jlargs)
15. └─JuliaConnectoR:::handleCallbacksAndOutput()
── Failure ('test-aaa-b-setup.R:13:3'): RNG initializes to seed=1 counter=0 ────
get_rng_seed() (`actual`) not equal to 1 (`expected`).
`actual` is NULL
`expected` is a double vector (1)
── Error ('test-aaa-b-setup.R:14:3'): RNG initializes to seed=1 counter=0 ──────
Error: Evaluation in Julia failed.
Original Julia error message:
LoadError: UndefVarError: rng not defined
Stacktrace:
[1] top-level scope
@ string:1
[2] eval
@ .\boot.jl:368 [inlined]
[3] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
@ Base .\loading.jl:1428
[4] include_string (repeats 2 times)
@ .\loading.jl:1438 [inlined]
[5] mainevalcmd(str::String)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\evaluating.jl:150
[6] invokelatest(::Any, ::Any, ::Vararg{Any}; kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Base .\essentials.jl:729
[7] invokelatest(::Any, ::Any, ::Vararg{Any})
@ Base .\essentials.jl:726
[8] evaluate!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket})
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\evaluating.jl:67
[9] evaluate_checked!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket})
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\evaluating.jl:55
[10] serve_repl(sock::Sockets.TCPSocket)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\communicating.jl:185
[11] serve(port_hint::Int64; multiclient::Bool, portfile::String)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\communicating.jl:152
[12] top-level scope
@ D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\main.jl:23
[13] include(mod::Module, _path::String)
@ Base .\Base.jl:419
[14] exec_options(opts::Base.JLOptions)
@ Base .\client.jl:303
[15] _start()
@ Base .\client.jl:522
in expression starting at string:1
Backtrace:
▆
1. ├─testthat::expect_equal(get_rng_state(), 0) at test-aaa-b-setup.R:14:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─jlmerclusterperm::get_rng_state()
5. └─JuliaConnectoR::juliaEval("Int(rng.ctr1)")
6. └─JuliaConnectoR::juliaCall("RConnector.mainevalcmd", expr)
7. ├─base::tryCatch(...)
8. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
9. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
10. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
11. └─JuliaConnectoR:::doCallJulia(funName, jlargs)
12. └─JuliaConnectoR:::handleCallbacksAndOutput()
── Error ('test-clusterpermute.R:3:1'): (code run outside of `test_that()`) ────
Error: Evaluation in Julia failed.
Original Julia error message:
LoadError: Failed to precompile Distributions [31c24e10-a181-5473-b8eb-7969acd0382f] to C:\Users\CRAN\.julia\compiled\v1.8\Distributions\jl_7DC.tmp.
Stacktrace:
[1] error(s::String)
@ Base .\error.jl:35
[2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool)
@ Base .\loading.jl:1705
[3] compilecache
@ .\loading.jl:1649 [inlined]
[4] _require(pkg::Base.PkgId)
@ Base .\loading.jl:1337
[5] _require_prelocked(uuidkey::Base.PkgId)
@ Base .\loading.jl:1200
[6] macro expansion
@ .\loading.jl:1180 [inlined]
[7] macro expansion
@ .\lock.jl:223 [inlined]
[8] require(into::Module, mod::Symbol)
@ Base .\loading.jl:1144
[9] eval
@ .\boot.jl:368 [inlined]
[10] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
@ Base .\loading.jl:1428
[11] include_string (repeats 2 times)
@ .\loading.jl:1438 [inlined]
[12] mainevalcmd(str::String)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\evaluating.jl:150
[13] invokelatest(::Any, ::Any, ::Vararg{Any}; kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Base .\essentials.jl:729
[14] invokelatest(::Any, ::Any, ::Vararg{Any})
@ Base .\essentials.jl:726
[15] evaluate!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket})
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\evaluating.jl:67
[16] evaluate_checked!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket})
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\evaluating.jl:55
[17] serve_repl(sock::Sockets.TCPSocket)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\communicating.jl:185
[18] (::Main.RConnector.var"#3#5")()
@ Main.RConnector .\task.jl:484
in expression starting at string:1
Backtrace:
▆
1. └─jlmerclusterperm::jlmerclusterperm_setup(...) at test-clusterpermute.R:3:1
2. └─jlmerclusterperm:::setup_with_progress(...)
3. ├─base::withCallingHandlers(...)
4. └─jlmerclusterperm:::source_jl(verbose = verbose)
5. └─JuliaConnectoR::juliaEval(jl_pkgs[i])
6. └─JuliaConnectoR::juliaCall("RConnector.mainevalcmd", expr)
7. ├─base::tryCatch(...)
8. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
9. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
10. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
11. └─JuliaConnectoR:::doCallJulia(funName, jlargs)
12. └─JuliaConnectoR:::handleCallbacksAndOutput()
[ FAIL 5 | WARN 0 | SKIP 7 | PASS 5 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-windows-x86_64
Current CRAN status: OK: 13