Last updated on 2024-12-18 19:49:39 CET.
| Package | ERROR | OK |
|---|---|---|
| epiCo | 8 | 5 |
Current CRAN status: ERROR: 8, OK: 5
Version: 1.0.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [49s/59s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(epiCo)
>
> test_check("epiCo")
1 codes are invalid.
Remember that the circular plot does not distinguish by sex.
Non-leaf weights ignored
Non-leaf weights ignored
Remember that the circular plot does not distinguish by sex.
Non-leaf weights ignored
Data prior to 2013-12-29 were not used for the endemic channel calculation.
Data after2016-12-25 were not used for the endemic channel calculation.
Municipalities 05659, 91001 are not part of the neighborhood according to the selected thershold in hours. It wil be displayed as 'Not significant' but it was not included in the local moran's index analysis.
Significant municipalities are:
05148 with High-Low (incidence - spatial correlation)
05318 with High-High (incidence - spatial correlation)
05440 with High-Low (incidence - spatial correlation)
05615 with Low-Low (incidence - spatial correlation)
Municipalities 05659, 91001 are not part of the neighborhood according to the selected thershold in hours. It wil be displayed as 'Not significant' but it was not included in the local moran's index analysis.
Significant municipalities are:
05148 with High-Low (incidence - spatial correlation)
05318 with High-High (incidence - spatial correlation)
05440 with High-Low (incidence - spatial correlation)
05615 with Low-Low (incidence - spatial correlation)
Municipalities 05659, 91001 are not part of the neighborhood according to the selected thershold in hours. It wil be displayed as 'Not significant' but it was not included in the local moran's index analysis.
There are no influential municipalities to plot
[ FAIL 1 | WARN 8 | SKIP 0 | PASS 114 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-spatiotemporal.R:78:3'): Morans Index errors and warnings are thrown ──
Error in `expect_message(morans_index(incidence_object, threshold = 12,
plot = TRUE), type = "list")`: Can't specify `...` without `pattern`.
Backtrace:
▆
1. └─testthat::expect_message(...) at test-spatiotemporal.R:78:3
2. └─testthat:::expect_condition_matching(...)
3. └─testthat:::cnd_matcher(...)
4. └─cli::cli_abort(...)
5. └─rlang::abort(...)
[ FAIL 1 | WARN 8 | SKIP 0 | PASS 114 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.0.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [31s/42s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(epiCo)
>
> test_check("epiCo")
1 codes are invalid.
Remember that the circular plot does not distinguish by sex.
Non-leaf weights ignored
Non-leaf weights ignored
Remember that the circular plot does not distinguish by sex.
Non-leaf weights ignored
Data prior to 2013-12-29 were not used for the endemic channel calculation.
Data after2016-12-25 were not used for the endemic channel calculation.
Municipalities 05659, 91001 are not part of the neighborhood according to the selected thershold in hours. It wil be displayed as 'Not significant' but it was not included in the local moran's index analysis.
Significant municipalities are:
05148 with High-Low (incidence - spatial correlation)
05318 with High-High (incidence - spatial correlation)
05440 with High-Low (incidence - spatial correlation)
05615 with Low-Low (incidence - spatial correlation)
Municipalities 05659, 91001 are not part of the neighborhood according to the selected thershold in hours. It wil be displayed as 'Not significant' but it was not included in the local moran's index analysis.
Significant municipalities are:
05148 with High-Low (incidence - spatial correlation)
05318 with High-High (incidence - spatial correlation)
05440 with High-Low (incidence - spatial correlation)
05615 with Low-Low (incidence - spatial correlation)
Municipalities 05659, 91001 are not part of the neighborhood according to the selected thershold in hours. It wil be displayed as 'Not significant' but it was not included in the local moran's index analysis.
There are no influential municipalities to plot
[ FAIL 1 | WARN 8 | SKIP 0 | PASS 114 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-spatiotemporal.R:78:3'): Morans Index errors and warnings are thrown ──
Error in `expect_message(morans_index(incidence_object, threshold = 12,
plot = TRUE), type = "list")`: Can't specify `...` without `pattern`.
Backtrace:
▆
1. └─testthat::expect_message(...) at test-spatiotemporal.R:78:3
2. └─testthat:::expect_condition_matching(...)
3. └─testthat:::cnd_matcher(...)
4. └─cli::cli_abort(...)
5. └─rlang::abort(...)
[ FAIL 1 | WARN 8 | SKIP 0 | PASS 114 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [95s/127s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(epiCo)
>
> test_check("epiCo")
1 codes are invalid.
Remember that the circular plot does not distinguish by sex.
Non-leaf weights ignored
Non-leaf weights ignored
Remember that the circular plot does not distinguish by sex.
Non-leaf weights ignored
Data prior to 2013-12-29 were not used for the endemic channel calculation.
Data after2016-12-25 were not used for the endemic channel calculation.
Municipalities 05659, 91001 are not part of the neighborhood according to the selected thershold in hours. It wil be displayed as 'Not significant' but it was not included in the local moran's index analysis.
Significant municipalities are:
05148 with High-Low (incidence - spatial correlation)
05318 with High-High (incidence - spatial correlation)
05440 with High-Low (incidence - spatial correlation)
05615 with Low-Low (incidence - spatial correlation)
Municipalities 05659, 91001 are not part of the neighborhood according to the selected thershold in hours. It wil be displayed as 'Not significant' but it was not included in the local moran's index analysis.
Significant municipalities are:
05148 with High-Low (incidence - spatial correlation)
05318 with High-High (incidence - spatial correlation)
05440 with High-Low (incidence - spatial correlation)
05615 with Low-Low (incidence - spatial correlation)
Municipalities 05659, 91001 are not part of the neighborhood according to the selected thershold in hours. It wil be displayed as 'Not significant' but it was not included in the local moran's index analysis.
There are no influential municipalities to plot
[ FAIL 1 | WARN 8 | SKIP 0 | PASS 114 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-spatiotemporal.R:78:3'): Morans Index errors and warnings are thrown ──
Error in `expect_message(morans_index(incidence_object, threshold = 12,
plot = TRUE), type = "list")`: Can't specify `...` without `pattern`.
Backtrace:
▆
1. └─testthat::expect_message(...) at test-spatiotemporal.R:78:3
2. └─testthat:::expect_condition_matching(...)
3. └─testthat:::cnd_matcher(...)
4. └─cli::cli_abort(...)
5. └─rlang::abort(...)
[ FAIL 1 | WARN 8 | SKIP 0 | PASS 114 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.0.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [102s/222s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(epiCo)
>
> test_check("epiCo")
1 codes are invalid.
Remember that the circular plot does not distinguish by sex.
Non-leaf weights ignored
Non-leaf weights ignored
Remember that the circular plot does not distinguish by sex.
Non-leaf weights ignored
Data prior to 2013-12-29 were not used for the endemic channel calculation.
Data after2016-12-25 were not used for the endemic channel calculation.
Municipalities 05659, 91001 are not part of the neighborhood according to the selected thershold in hours. It wil be displayed as 'Not significant' but it was not included in the local moran's index analysis.
Significant municipalities are:
05148 with High-Low (incidence - spatial correlation)
05318 with High-High (incidence - spatial correlation)
05440 with High-Low (incidence - spatial correlation)
05615 with Low-Low (incidence - spatial correlation)
Municipalities 05659, 91001 are not part of the neighborhood according to the selected thershold in hours. It wil be displayed as 'Not significant' but it was not included in the local moran's index analysis.
Significant municipalities are:
05148 with High-Low (incidence - spatial correlation)
05318 with High-High (incidence - spatial correlation)
05440 with High-Low (incidence - spatial correlation)
05615 with Low-Low (incidence - spatial correlation)
Municipalities 05659, 91001 are not part of the neighborhood according to the selected thershold in hours. It wil be displayed as 'Not significant' but it was not included in the local moran's index analysis.
There are no influential municipalities to plot
[ FAIL 1 | WARN 8 | SKIP 0 | PASS 114 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-spatiotemporal.R:78:3'): Morans Index errors and warnings are thrown ──
Error in `expect_message(morans_index(incidence_object, threshold = 12,
plot = TRUE), type = "list")`: Can't specify `...` without `pattern`.
Backtrace:
▆
1. └─testthat::expect_message(...) at test-spatiotemporal.R:78:3
2. └─testthat:::expect_condition_matching(...)
3. └─testthat:::cnd_matcher(...)
4. └─cli::cli_abort(...)
5. └─rlang::abort(...)
[ FAIL 1 | WARN 8 | SKIP 0 | PASS 114 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.0.0
Check: tests
Result: ERROR
Running 'testthat.R' [53s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(epiCo)
>
> test_check("epiCo")
1 codes are invalid.
Remember that the circular plot does not distinguish by sex.
Non-leaf weights ignored
Non-leaf weights ignored
Remember that the circular plot does not distinguish by sex.
Non-leaf weights ignored
Data prior to 2013-12-29 were not used for the endemic channel calculation.
Data after2016-12-25 were not used for the endemic channel calculation.
Municipalities 05659, 91001 are not part of the neighborhood according to the selected thershold in hours. It wil be displayed as 'Not significant' but it was not included in the local moran's index analysis.
Significant municipalities are:
05148 with High-Low (incidence - spatial correlation)
05318 with High-High (incidence - spatial correlation)
05440 with High-Low (incidence - spatial correlation)
05615 with Low-Low (incidence - spatial correlation)
Municipalities 05659, 91001 are not part of the neighborhood according to the selected thershold in hours. It wil be displayed as 'Not significant' but it was not included in the local moran's index analysis.
Significant municipalities are:
05148 with High-Low (incidence - spatial correlation)
05318 with High-High (incidence - spatial correlation)
05440 with High-Low (incidence - spatial correlation)
05615 with Low-Low (incidence - spatial correlation)
Municipalities 05659, 91001 are not part of the neighborhood according to the selected thershold in hours. It wil be displayed as 'Not significant' but it was not included in the local moran's index analysis.
There are no influential municipalities to plot
[ FAIL 1 | WARN 8 | SKIP 0 | PASS 114 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-spatiotemporal.R:78:3'): Morans Index errors and warnings are thrown ──
Error in `expect_message(morans_index(incidence_object, threshold = 12,
plot = TRUE), type = "list")`: Can't specify `...` without `pattern`.
Backtrace:
▆
1. └─testthat::expect_message(...) at test-spatiotemporal.R:78:3
2. └─testthat:::expect_condition_matching(...)
3. └─testthat:::cnd_matcher(...)
4. └─cli::cli_abort(...)
5. └─rlang::abort(...)
[ FAIL 1 | WARN 8 | SKIP 0 | PASS 114 ]
Error: Test failures
Execution halted
Flavor: r-devel-windows-x86_64
Version: 1.0.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [43s/60s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(epiCo)
>
> test_check("epiCo")
1 codes are invalid.
Remember that the circular plot does not distinguish by sex.
Non-leaf weights ignored
Non-leaf weights ignored
Remember that the circular plot does not distinguish by sex.
Non-leaf weights ignored
Data prior to 2013-12-29 were not used for the endemic channel calculation.
Data after2016-12-25 were not used for the endemic channel calculation.
Municipalities 05659, 91001 are not part of the neighborhood according to the selected thershold in hours. It wil be displayed as 'Not significant' but it was not included in the local moran's index analysis.
Significant municipalities are:
05148 with High-Low (incidence - spatial correlation)
05318 with High-High (incidence - spatial correlation)
05440 with High-Low (incidence - spatial correlation)
05615 with Low-Low (incidence - spatial correlation)
Municipalities 05659, 91001 are not part of the neighborhood according to the selected thershold in hours. It wil be displayed as 'Not significant' but it was not included in the local moran's index analysis.
Significant municipalities are:
05148 with High-Low (incidence - spatial correlation)
05318 with High-High (incidence - spatial correlation)
05440 with High-Low (incidence - spatial correlation)
05615 with Low-Low (incidence - spatial correlation)
Municipalities 05659, 91001 are not part of the neighborhood according to the selected thershold in hours. It wil be displayed as 'Not significant' but it was not included in the local moran's index analysis.
There are no influential municipalities to plot
[ FAIL 1 | WARN 8 | SKIP 0 | PASS 114 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-spatiotemporal.R:78:3'): Morans Index errors and warnings are thrown ──
Error in `expect_message(morans_index(incidence_object, threshold = 12,
plot = TRUE), type = "list")`: Can't specify `...` without `pattern`.
Backtrace:
▆
1. └─testthat::expect_message(...) at test-spatiotemporal.R:78:3
2. └─testthat:::expect_condition_matching(...)
3. └─testthat:::cnd_matcher(...)
4. └─cli::cli_abort(...)
5. └─rlang::abort(...)
[ FAIL 1 | WARN 8 | SKIP 0 | PASS 114 ]
Error: Test failures
Execution halted
Flavor: r-patched-linux-x86_64
Version: 1.0.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [44s/51s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(epiCo)
>
> test_check("epiCo")
1 codes are invalid.
Remember that the circular plot does not distinguish by sex.
Non-leaf weights ignored
Non-leaf weights ignored
Remember that the circular plot does not distinguish by sex.
Non-leaf weights ignored
Data prior to 2013-12-29 were not used for the endemic channel calculation.
Data after2016-12-25 were not used for the endemic channel calculation.
Municipalities 05659, 91001 are not part of the neighborhood according to the selected thershold in hours. It wil be displayed as 'Not significant' but it was not included in the local moran's index analysis.
Significant municipalities are:
05148 with High-Low (incidence - spatial correlation)
05318 with High-High (incidence - spatial correlation)
05440 with High-Low (incidence - spatial correlation)
05615 with Low-Low (incidence - spatial correlation)
Municipalities 05659, 91001 are not part of the neighborhood according to the selected thershold in hours. It wil be displayed as 'Not significant' but it was not included in the local moran's index analysis.
Significant municipalities are:
05148 with High-Low (incidence - spatial correlation)
05318 with High-High (incidence - spatial correlation)
05440 with High-Low (incidence - spatial correlation)
05615 with Low-Low (incidence - spatial correlation)
Municipalities 05659, 91001 are not part of the neighborhood according to the selected thershold in hours. It wil be displayed as 'Not significant' but it was not included in the local moran's index analysis.
There are no influential municipalities to plot
[ FAIL 1 | WARN 8 | SKIP 0 | PASS 114 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-spatiotemporal.R:78:3'): Morans Index errors and warnings are thrown ──
Error in `expect_message(morans_index(incidence_object, threshold = 12,
plot = TRUE), type = "list")`: Can't specify `...` without `pattern`.
Backtrace:
▆
1. └─testthat::expect_message(...) at test-spatiotemporal.R:78:3
2. └─testthat:::expect_condition_matching(...)
3. └─testthat:::cnd_matcher(...)
4. └─cli::cli_abort(...)
5. └─rlang::abort(...)
[ FAIL 1 | WARN 8 | SKIP 0 | PASS 114 ]
Error: Test failures
Execution halted
Flavor: r-release-linux-x86_64
Version: 1.0.0
Check: tests
Result: ERROR
Running 'testthat.R' [54s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(epiCo)
>
> test_check("epiCo")
1 codes are invalid.
Remember that the circular plot does not distinguish by sex.
Non-leaf weights ignored
Non-leaf weights ignored
Remember that the circular plot does not distinguish by sex.
Non-leaf weights ignored
Data prior to 2013-12-29 were not used for the endemic channel calculation.
Data after2016-12-25 were not used for the endemic channel calculation.
Municipalities 05659, 91001 are not part of the neighborhood according to the selected thershold in hours. It wil be displayed as 'Not significant' but it was not included in the local moran's index analysis.
Significant municipalities are:
05148 with High-Low (incidence - spatial correlation)
05318 with High-High (incidence - spatial correlation)
05440 with High-Low (incidence - spatial correlation)
05615 with Low-Low (incidence - spatial correlation)
Municipalities 05659, 91001 are not part of the neighborhood according to the selected thershold in hours. It wil be displayed as 'Not significant' but it was not included in the local moran's index analysis.
Significant municipalities are:
05148 with High-Low (incidence - spatial correlation)
05318 with High-High (incidence - spatial correlation)
05440 with High-Low (incidence - spatial correlation)
05615 with Low-Low (incidence - spatial correlation)
Municipalities 05659, 91001 are not part of the neighborhood according to the selected thershold in hours. It wil be displayed as 'Not significant' but it was not included in the local moran's index analysis.
There are no influential municipalities to plot
[ FAIL 1 | WARN 8 | SKIP 0 | PASS 114 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-spatiotemporal.R:78:3'): Morans Index errors and warnings are thrown ──
Error in `expect_message(morans_index(incidence_object, threshold = 12,
plot = TRUE), type = "list")`: Can't specify `...` without `pattern`.
Backtrace:
▆
1. └─testthat::expect_message(...) at test-spatiotemporal.R:78:3
2. └─testthat:::expect_condition_matching(...)
3. └─testthat:::cnd_matcher(...)
4. └─cli::cli_abort(...)
5. └─rlang::abort(...)
[ FAIL 1 | WARN 8 | SKIP 0 | PASS 114 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-windows-x86_64