Last updated on 2025-02-11 19:49:24 CET.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| amadeus | 1 | 4 | 8 |
| GeoTox | 1 | 9 |
Current CRAN status: ERROR: 1, NOTE: 4, OK: 8
Version: 1.2.3
Check: DESCRIPTION meta-information
Result: NOTE
Missing dependency on R >= 4.2.0 because package code uses the pipe
placeholder syntax added in R 4.2.0.
File(s) using such syntax:
‘calculate_covariates.R’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64
Version: 1.2.3
Check: examples
Result: ERROR
Running examples in ‘amadeus-Ex.R’ failed
The error most likely occurred in:
> ### Name: sum_edc
> ### Title: Calculate isotropic Sum of Exponentially Decaying Contributions
> ### (SEDC) covariates
> ### Aliases: sum_edc
>
> ### ** Examples
>
> set.seed(101)
> ncpath <- system.file("gpkg/nc.gpkg", package = "sf")
> nc <- terra::vect(ncpath)
*** caught segfault ***
address 0x6, cause 'memory not mapped'
Traceback:
1: .External(list(name = "CppMethod__invoke_notvoid", address = <pointer: 0x36a3ca0>, dll = list(name = "Rcpp", path = "/data/gannet/ripley/R/test-dev/Rcpp/libs/Rcpp.so", dynamicLookup = TRUE, handle = <pointer: 0x37a16c0>, info = <pointer: 0x1e0c6f0>, forceSymbols = FALSE), numParameters = -1L), <pointer: 0x9cc8dc0>, <pointer: 0x366ad80>, .pointer, ...)
2: p@pntr$read(x, layer, query, extent, filter, proxy, what, opts)
3: .local(x, ...)
4: terra::vect(ncpath)
5: terra::vect(ncpath)
An irrecoverable exception occurred. R is aborting now ...
Flavor: r-devel-linux-x86_64-fedora-gcc
Current CRAN status: ERROR: 1, OK: 9
Version: 0.2.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘introduction.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-devel/GeoTox.Rcheck/vign_test/GeoTox/vignettes/introduction_files/figure-html/unnamed-chunk-3-1.png
672x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 26389 bytes
Input file size = 26503 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20886
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20886
Output IDAT size = 20886 bytes (5503 bytes decrease)
Output file size = 20964 bytes (5539 bytes = 20.90% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/GeoTox.Rcheck/vign_test/GeoTox/vignettes/introduction_files/figure-html/unnamed-chunk-3-2.png
672x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 30087 bytes
Input file size = 30201 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26572
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26572
Output IDAT size = 26572 bytes (3515 bytes decrease)
Output file size = 26650 bytes (3551 bytes = 11.76% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/GeoTox.Rcheck/vign_test/GeoTox/vignettes/introduction_files/figure-html/unnamed-chunk-3-3.png
672x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 38053 bytes
Input file size = 38179 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 32452
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 32452
Output IDAT size = 32452 bytes (5601 bytes decrease)
Output file size = 32530 bytes (5649 bytes = 14.80% decrease)
--- re-building ‘package_data.Rmd’ using rmarkdown
--- finished re-building ‘package_data.Rmd’
SUMMARY: processing the following file failed:
‘introduction.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc