Last updated on 2024-12-18 19:49:41 CET.
| Package | ERROR | OK |
|---|---|---|
| easybio | 1 | 12 |
Current CRAN status: ERROR: 1, OK: 12
Version: 1.1.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘example-bulk-rna-seq-workflow.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/easybio.Rcheck/vign_test/easybio/vignettes/example-bulk-rna-seq-workflow_files/figure-html/unnamed-chunk-5-1.png
480x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 37293 bytes
Input file size = 37419 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26826
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26826
Output IDAT size = 26826 bytes (10467 bytes decrease)
Output file size = 26904 bytes (10515 bytes = 28.10% decrease)
Quitting from lines 142-145 [unnamed-chunk-8] (example-bulk-rna-seq-workflow.Rmd)
Error: processing vignette 'example-bulk-rna-seq-workflow.Rmd' failed with diagnostics:
there is no package called 'fgsea'
--- failed re-building ‘example-bulk-rna-seq-workflow.Rmd’
--- re-building ‘example-single-cell-annotation.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/easybio.Rcheck/vign_test/easybio/vignettes/example-single-cell-annotation_files/figure-html/unnamed-chunk-4-1.png
720x576 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 38828 bytes
Input file size = 38954 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 33406
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 33406
Output IDAT size = 33406 bytes (5422 bytes decrease)
Output file size = 33484 bytes (5470 bytes = 14.04% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/easybio.Rcheck/vign_test/easybio/vignettes/example-single-cell-annotation_files/figure-html/unnamed-chunk-9-1.png
720x672 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 89061 bytes
Input file size = 89259 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 73263
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 73263
Output IDAT size = 73263 bytes (15798 bytes decrease)
Output file size = 73341 bytes (15918 bytes = 17.83% decrease)
--- finished re-building ‘example-single-cell-annotation.Rmd’
SUMMARY: processing the following file failed:
‘example-bulk-rna-seq-workflow.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc