Last updated on 2025-04-23 07:49:59 CEST.
| Package | ERROR | OK |
|---|---|---|
| lgspline | 2 | 6 |
Current CRAN status: ERROR: 2, OK: 6
Version: 0.1.0
Check: tests
Result: ERROR
Running ‘spelling.R’
Running ‘testthat.R’ [34s/84s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(lgspline)
> test_check("lgspline")
Pre-Processing
Starting
Polynomial Expansions
Standardization
Get Knots
Assign partitions
Expansion Standardize
Knot Expand
2nd Derivative Penalty
Constraint Matrix
Predictor-and-Partiiton Penalty Setup
Parallel and Weighting Setup
SQP Setup
Tune Smoothing Spline Penalty
Prep for final fitting
Last fit
After Fitting Processing
Optional Components
U
Lagrangian Multiplier Smoothing Spline Model Summary
====================================================
Model Family: quasibinomial
Model Family (Link Function): quasibinomial (logit)
Observations: 250
Predictors: 1
Partitions: 11
Basis Functions per Partition: 4
----------------------------------------------------
Univariate Inference:
Estimate Std. Error z value Pr(>|z|)
partition1.intercept -1.083730e+00 450.9229358 -2.403360e-03 9.980824e-01
partition1.x -4.154440e-02 1111.0707971 -3.739132e-05 9.999702e-01
partition1.x^2 -1.350788e-02 613.6568894 -2.201211e-05 9.999824e-01
partition1.x^3 -1.453430e-03 64.6560087 -2.247942e-05 9.999821e-01
partition2.intercept -6.524693e-01 287.1416857 -2.272291e-03 9.981870e-01
partition2.x -2.294057e-02 890.8653132 -2.575089e-05 9.999795e-01
partition2.x^2 -5.981955e-03 617.5433666 -9.686696e-06 9.999923e-01
partition2.x^3 -2.309796e-04 81.3929375 -2.837833e-06 9.999977e-01
partition3.intercept -1.226814e+00 162.8709690 -7.532430e-03 9.939900e-01
partition3.x -1.618938e-02 666.7798557 -2.427995e-05 9.999806e-01
partition3.x^2 -1.638188e-02 612.8500580 -2.673064e-05 9.999787e-01
partition3.x^3 -4.624865e-03 47.2284585 -9.792537e-05 9.999219e-01
partition4.intercept -6.423439e-01 28.0114975 -2.293144e-02 9.817050e-01
partition4.x -3.432002e-02 174.5161346 -1.966582e-04 9.998431e-01
partition4.x^2 -2.840035e-02 241.3572405 -1.176693e-04 9.999061e-01
partition4.x^3 -7.826113e-03 63.0764559 -1.240734e-04 9.999010e-01
partition5.intercept -1.155371e+00 4.5140487 -2.559501e-01 7.979893e-01
partition5.x -4.565500e+00 59.2607464 -7.704087e-02 9.385910e-01
partition5.x^2 -9.127908e+00 168.0926382 -5.430284e-02 9.566939e-01
partition5.x^3 -5.746810e+00 88.1192382 -6.521629e-02 9.480018e-01
partition6.intercept -1.471225e+00 0.3647202 -4.033846e+00 5.487121e-05
partition6.x 4.557362e+00 5.6686349 8.039611e-01 4.214195e-01
partition6.x^2 1.049147e+02 46.2170114 2.270046e+00 2.320478e-02
partition6.x^3 -4.662939e+00 84.3640223 -5.527166e-02 9.559220e-01
partition7.intercept -6.665160e-02 2.9482871 -2.260689e-02 9.819638e-01
partition7.x -5.336450e-02 38.7983939 -1.375431e-03 9.989026e-01
partition7.x^2 2.933060e-02 110.1990154 2.661602e-04 9.997876e-01
partition7.x^3 -3.485641e-03 57.7852985 -6.032055e-05 9.999519e-01
partition8.intercept 2.173114e+00 18.5850218 1.169282e-01 9.069169e-01
partition8.x -2.972642e+01 115.6713587 -2.569903e-01 7.971863e-01
partition8.x^2 4.739469e+01 160.0397665 2.961432e-01 7.671207e-01
partition8.x^3 -1.935527e+01 41.8918035 -4.620299e-01 6.440599e-01
partition9.intercept -8.430442e-04 911.3277372 -9.250724e-07 9.999993e-01
partition9.x -1.343712e+01 1065.3561696 -1.261280e-02 9.899367e-01
partition9.x^2 -9.070418e-01 232.5330963 -3.900700e-03 9.968877e-01
partition9.x^3 -5.870929e-01 102.0353887 -5.753816e-03 9.954091e-01
partition10.intercept 1.564940e+00 98.7719574 1.584397e-02 9.873589e-01
partition10.x 1.976609e-02 303.7015648 6.508391e-05 9.999481e-01
partition10.x^2 -2.264401e-02 209.8837697 -1.078883e-04 9.999139e-01
partition10.x^3 5.538549e-03 27.7545082 1.995549e-04 9.998408e-01
partition11.intercept -3.165436e-01 150.8914604 -2.097823e-03 9.983262e-01
partition11.x 1.148684e-01 373.3039743 3.077075e-04 9.997545e-01
partition11.x^2 6.723730e-04 206.4194398 3.257314e-06 9.999974e-01
partition11.x^3 -4.335440e-03 21.7082977 -1.997135e-04 9.998407e-01
CI LB CI UB
partition1.intercept -884.876444 882.7089838
partition1.x -2177.700291 2177.6172022
partition1.x^2 -1202.758910 1202.7318942
partition1.x^3 -126.724902 126.7219949
partition2.intercept -563.439832 562.1348931
partition2.x -1746.086870 1746.0409884
partition2.x^2 -1210.368739 1210.3567754
partition2.x^3 -159.527457 159.5269952
partition3.intercept -320.448048 317.9944193
partition3.x -1306.880692 1306.8483133
partition3.x^2 -1201.180424 1201.1476598
partition3.x^3 -92.570703 92.5614529
partition4.intercept -55.543870 54.2591824
partition4.x -342.079659 342.0110185
partition4.x^2 -473.079899 473.0230985
partition4.x^3 -123.635408 123.6197557
partition5.intercept -10.002744 7.6920014
partition5.x -120.714428 111.5834289
partition5.x^2 -338.583425 320.3276089
partition5.x^3 -178.457343 166.9637232
partition6.intercept -2.186064 -0.7563869
partition6.x -6.552958 15.6676821
partition6.x^2 14.331070 195.4984257
partition6.x^3 -170.013385 160.6875061
partition7.intercept -5.845188 5.7118850
partition7.x -76.096819 75.9900902
partition7.x^2 -215.956771 216.0154320
partition7.x^3 -113.260590 113.2536182
partition8.intercept -34.252860 38.5990874
partition8.x -256.438113 196.9852812
partition8.x^2 -266.277485 361.0668724
partition8.x^3 -101.461692 62.7511598
partition9.intercept -1786.170386 1786.1687000
partition9.x -2101.496846 2074.6226003
partition9.x^2 -456.663536 454.8494521
partition9.x^3 -200.572780 199.3985941
partition10.intercept -192.024539 195.1544192
partition10.x -595.224363 595.2638952
partition10.x^2 -411.387273 411.3419855
partition10.x^3 -54.392298 54.4033751
partition11.intercept -296.058372 295.4252844
partition11.x -731.547476 731.7772134
partition11.x^2 -404.573995 404.5753400
partition11.x^3 -42.551817 42.5431462
Dispersion: 1
Effective degrees of freedom: 206
Critical value for confidence intervals: 1.959964
----------------------------------------------------
[ FAIL 1 | WARN 39 | SKIP 1 | PASS 37 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• On CRAN (1): 'test-parallel.R:2:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-advanced.R:34:3'): Weibull accelerated failure time (AFT) models can be fit under custom constraints ──
Error in `model_fit$B`: $ operator is invalid for atomic vectors
Backtrace:
▆
1. ├─testthat::expect_equal(round(sum(unlist(model_fit$B)), 10), 12) at test-advanced.R:34:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─base::unlist(model_fit$B)
[ FAIL 1 | WARN 39 | SKIP 1 | PASS 37 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.1.0
Check: tests
Result: ERROR
Running ‘spelling.R’ [0s/0s]
Running ‘testthat.R’ [7s/8s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(lgspline)
> test_check("lgspline")
Pre-Processing
Starting
Polynomial Expansions
Standardization
Get Knots
Assign partitions
Expansion Standardize
Knot Expand
2nd Derivative Penalty
Constraint Matrix
Predictor-and-Partiiton Penalty Setup
Parallel and Weighting Setup
SQP Setup
Tune Smoothing Spline Penalty
Prep for final fitting
Last fit
After Fitting Processing
Optional Components
U
Variance Est
VarCov Mat
Lagrangian Multiplier Smoothing Spline Model Summary
====================================================
Model Family: quasibinomial
Model Family (Link Function): quasibinomial (logit)
Observations: 250
Predictors: 1
Partitions: 11
Basis Functions per Partition: 4
----------------------------------------------------
Univariate Inference:
Estimate Std. Error z value Pr(>|z|)
partition1.intercept -1.083730e+00 450.9229324 -2.403360e-03 9.980824e-01
partition1.x -4.154440e-02 1111.0707885 -3.739132e-05 9.999702e-01
partition1.x^2 -1.350788e-02 613.6568848 -2.201211e-05 9.999824e-01
partition1.x^3 -1.453430e-03 64.6560082 -2.247942e-05 9.999821e-01
partition2.intercept -6.524693e-01 287.1416848 -2.272291e-03 9.981870e-01
partition2.x -2.294057e-02 890.8653104 -2.575089e-05 9.999795e-01
partition2.x^2 -5.981955e-03 617.5433646 -9.686696e-06 9.999923e-01
partition2.x^3 -2.309796e-04 81.3929373 -2.837834e-06 9.999977e-01
partition3.intercept -1.226814e+00 162.8709689 -7.532430e-03 9.939900e-01
partition3.x -1.618938e-02 666.7798552 -2.427995e-05 9.999806e-01
partition3.x^2 -1.638188e-02 612.8500576 -2.673064e-05 9.999787e-01
partition3.x^3 -4.624865e-03 47.2284585 -9.792537e-05 9.999219e-01
partition4.intercept -6.423439e-01 28.0114975 -2.293144e-02 9.817050e-01
partition4.x -3.432002e-02 174.5161346 -1.966582e-04 9.998431e-01
partition4.x^2 -2.840035e-02 241.3572405 -1.176693e-04 9.999061e-01
partition4.x^3 -7.826113e-03 63.0764559 -1.240734e-04 9.999010e-01
partition5.intercept -1.155371e+00 4.5140487 -2.559501e-01 7.979893e-01
partition5.x -4.565500e+00 59.2607464 -7.704087e-02 9.385910e-01
partition5.x^2 -9.127908e+00 168.0926382 -5.430284e-02 9.566939e-01
partition5.x^3 -5.746810e+00 88.1192382 -6.521629e-02 9.480018e-01
partition6.intercept -1.471225e+00 0.3647202 -4.033846e+00 5.487121e-05
partition6.x 4.557362e+00 5.6686349 8.039611e-01 4.214195e-01
partition6.x^2 1.049147e+02 46.2170114 2.270046e+00 2.320478e-02
partition6.x^3 -4.662939e+00 84.3640223 -5.527166e-02 9.559220e-01
partition7.intercept -6.665160e-02 2.9482871 -2.260689e-02 9.819638e-01
partition7.x -5.336450e-02 38.7983939 -1.375431e-03 9.989026e-01
partition7.x^2 2.933060e-02 110.1990154 2.661602e-04 9.997876e-01
partition7.x^3 -3.485641e-03 57.7852985 -6.032055e-05 9.999519e-01
partition8.intercept 2.173114e+00 18.5850218 1.169282e-01 9.069169e-01
partition8.x -2.972642e+01 115.6713587 -2.569903e-01 7.971863e-01
partition8.x^2 4.739469e+01 160.0397665 2.961432e-01 7.671207e-01
partition8.x^3 -1.935527e+01 41.8918035 -4.620299e-01 6.440599e-01
partition9.intercept -8.430442e-04 911.3277372 -9.250724e-07 9.999993e-01
partition9.x -1.343712e+01 1065.3561696 -1.261280e-02 9.899367e-01
partition9.x^2 -9.070418e-01 232.5330963 -3.900700e-03 9.968877e-01
partition9.x^3 -5.870929e-01 102.0353887 -5.753816e-03 9.954091e-01
partition10.intercept 1.564940e+00 98.7719575 1.584397e-02 9.873589e-01
partition10.x 1.976609e-02 303.7015650 6.508391e-05 9.999481e-01
partition10.x^2 -2.264401e-02 209.8837698 -1.078883e-04 9.999139e-01
partition10.x^3 5.538549e-03 27.7545082 1.995549e-04 9.998408e-01
partition11.intercept -3.165436e-01 150.8914544 -2.097823e-03 9.983262e-01
partition11.x 1.148684e-01 373.3039592 3.077075e-04 9.997545e-01
partition11.x^2 6.723730e-04 206.4194315 3.257314e-06 9.999974e-01
partition11.x^3 -4.335440e-03 21.7082969 -1.997135e-04 9.998407e-01
CI LB CI UB
partition1.intercept -884.876437 882.7089770
partition1.x -2177.700274 2177.6171854
partition1.x^2 -1202.758901 1202.7318851
partition1.x^3 -126.724901 126.7219940
partition2.intercept -563.439830 562.1348913
partition2.x -1746.086864 1746.0409828
partition2.x^2 -1210.368735 1210.3567715
partition2.x^3 -159.527457 159.5269947
partition3.intercept -320.448047 317.9944190
partition3.x -1306.880691 1306.8483123
partition3.x^2 -1201.180423 1201.1476589
partition3.x^3 -92.570703 92.5614529
partition4.intercept -55.543870 54.2591824
partition4.x -342.079659 342.0110185
partition4.x^2 -473.079899 473.0230985
partition4.x^3 -123.635408 123.6197557
partition5.intercept -10.002744 7.6920014
partition5.x -120.714428 111.5834289
partition5.x^2 -338.583425 320.3276089
partition5.x^3 -178.457343 166.9637232
partition6.intercept -2.186064 -0.7563869
partition6.x -6.552958 15.6676821
partition6.x^2 14.331070 195.4984257
partition6.x^3 -170.013385 160.6875061
partition7.intercept -5.845188 5.7118850
partition7.x -76.096819 75.9900902
partition7.x^2 -215.956771 216.0154320
partition7.x^3 -113.260590 113.2536182
partition8.intercept -34.252860 38.5990874
partition8.x -256.438113 196.9852812
partition8.x^2 -266.277485 361.0668723
partition8.x^3 -101.461692 62.7511598
partition9.intercept -1786.170386 1786.1687000
partition9.x -2101.496846 2074.6226003
partition9.x^2 -456.663536 454.8494521
partition9.x^3 -200.572780 199.3985941
partition10.intercept -192.024539 195.1544193
partition10.x -595.224363 595.2638955
partition10.x^2 -411.387274 411.3419857
partition10.x^3 -54.392298 54.4033751
partition11.intercept -296.058360 295.4252725
partition11.x -731.547447 731.7771838
partition11.x^2 -404.573979 404.5753239
partition11.x^3 -42.551815 42.5431446
Dispersion: 1
Effective degrees of freedom: 206
Critical value for confidence intervals: 1.959964
----------------------------------------------------
[ FAIL 1 | WARN 0 | SKIP 1 | PASS 37 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• On CRAN (1): 'test-parallel.R:2:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-advanced.R:34:3'): Weibull accelerated failure time (AFT) models can be fit under custom constraints ──
round(sum(unlist(model_fit$B)), 10) (`actual`) not equal to 12 (`expected`).
`actual`: -49.2
`expected`: 12.0
[ FAIL 1 | WARN 0 | SKIP 1 | PASS 37 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-arm64