Last updated on 2025-04-23 07:50:00 CEST.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| mixKernel | 2 | 11 | |
| NiLeDAM | 13 | ||
| RNAseqNet | 13 | ||
| SISIR | 13 | ||
| SOMbrero | 6 | 7 | |
| treediff | 13 |
Current CRAN status: ERROR: 2, OK: 11
Version: 0.9-1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘a-mixKernelInstallation.Rmd’ using rmarkdown
--- finished re-building ‘a-mixKernelInstallation.Rmd’
--- re-building ‘mixKernelUsersGuide.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/mixKernel.Rcheck/vign_test/mixKernel/vignettes/mixKernelUsersGuide_files/figure-html/cim_kernel-1.png
800x1000 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 43589 bytes
Input file size = 43727 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40078
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40078
Output IDAT size = 40078 bytes (3511 bytes decrease)
Output file size = 40156 bytes (3571 bytes = 8.17% decrease)
Quitting from mixKernelUsersGuide.Rmd:144-160 [plotIndiv_PCA]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'mixKernelUsersGuide.Rmd' failed with diagnostics:
Continuous values supplied to discrete scale.
ℹ Example values: 3, 17, 17, 17, and 3
--- failed re-building ‘mixKernelUsersGuide.Rmd’
SUMMARY: processing the following file failed:
‘mixKernelUsersGuide.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-linux-x86_64
Version: 0.9-1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘a-mixKernelInstallation.Rmd’ using rmarkdown
--- finished re-building ‘a-mixKernelInstallation.Rmd’
--- re-building ‘mixKernelUsersGuide.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/mixKernel.Rcheck/vign_test/mixKernel/vignettes/mixKernelUsersGuide_files/figure-html/cim_kernel-1.png
800x1000 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 43589 bytes
Input file size = 43727 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40078
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40078
Output IDAT size = 40078 bytes (3511 bytes decrease)
Output file size = 40156 bytes (3571 bytes = 8.17% decrease)
Quitting from mixKernelUsersGuide.Rmd:144-160 [plotIndiv_PCA]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'mixKernelUsersGuide.Rmd' failed with diagnostics:
Continuous values supplied to discrete scale.
ℹ Example values: 3, 17, 17, 17, and 3
--- failed re-building ‘mixKernelUsersGuide.Rmd’
SUMMARY: processing the following file failed:
‘mixKernelUsersGuide.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-linux-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: NOTE: 6, OK: 7
Version: 1.4-2
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
superClass.Rd: igraph
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-x86_64
Version: 1.4-2
Check: for unstated dependencies in ‘demo’
Result: NOTE
'library' or 'require' call not declared from: ‘RColorBrewer’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Current CRAN status: OK: 13