Last updated on 2024-12-18 19:49:45 CET.
| Package | NOTE | OK |
|---|---|---|
| DAISIE | 9 | 4 |
| DAMOCLES | 13 | |
| DDD | 4 | 9 |
| PBD | 10 | 3 |
| SADISA | 13 | |
| secsse | 7 | 6 |
Current CRAN status: NOTE: 9, OK: 4
Version: 4.4.1
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
DAISIE_ML.Rd: deSolve
DAISIE_ML1.Rd: deSolve
DAISIE_ML2.Rd: deSolve
DAISIE_ML4.Rd: deSolve
DAISIE_ML_IW.Rd: deSolve
DAISIE_loglik_integrand.Rd: deSolve
DAISIE_loglik_integrate.Rd: deSolve
default_params_doc.Rd: deSolve
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64
Version: 4.4.1
Check: installed package size
Result: NOTE
installed size is 37.9Mb
sub-directories of 1Mb or more:
libs 35.9Mb
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 4.4.1
Check: package dependencies
Result: NOTE
Package which this enhances but not available for checking: 'doMC'
Flavors: r-release-windows-x86_64, r-oldrel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: NOTE: 4, OK: 9
Version: 5.2.2
Check: installed package size
Result: NOTE
installed size is 7.8Mb
sub-directories of 1Mb or more:
libs 7.3Mb
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: NOTE: 10, OK: 3
Version: 1.4
Check: Rd files
Result: NOTE
checkRd: (-1) pbd_loglik.Rd:31: Lost braces
31 | \code{pars2[1]} {set the conditioning on non-extinction of the clade (1) or not (0) \cr \cr}
| ^
checkRd: (-1) pbd_loglik.Rd:32: Lost braces
32 | \code{pars2[2]} {sets whether the likelihood is for the branching times (0) or the phylogeny (1) \cr \cr}
| ^
checkRd: (-1) pbd_loglik.Rd:33: Lost braces
33 | \code{pars2[3]} {sets whether the first element of the branching times is the stem (1) or the crown (2) age \cr \cr}
| ^
checkRd: (-1) pbd_loglik.Rd:34: Lost braces
34 | \code{pars2[4]} {sets whether the parameters and likelihood should be shown on screen (1) or not (0) \cr \cr}
| ^
checkRd: (-1) pbd_loglik.Rd:35: Lost braces
35 | \code{pars2[5]} {sets which method should be used in the ode-solver. Default is 'lsoda'. See package deSolve for details. \cr \cr}
| ^
checkRd: (-1) pbd_loglik.Rd:36: Lost braces
36 | \code{pars2[6]}{Sets the lower bound of the number of species on which conditioning should be done when cond = 2. Set this to 0 when conditioning should be done on precisely the number of species (default)\cr \cr}
| ^
checkRd: (-1) pbd_loglik.Rd:37: Lost braces
37 | \code{pars2[7]}{Sets the upper bound of the number of species on which conditioning should be done when cond = 2. Set this to 0 when conditioning should be done on precisely the number of species (default)\cr \cr}
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64
Version: 1.4
Check: dependencies in R code
Result: NOTE
Namespace in Imports field not imported from: ‘ade4’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Current CRAN status: OK: 13
Current CRAN status: NOTE: 7, OK: 6
Version: 3.1.0
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
cla_secsse_ml.Rd: DDD
cla_secsse_ml_func_def_pars.Rd: DDD
default_params_doc.Rd: DDD
secsse_ml.Rd: DDD
secsse_ml_func_def_pars.Rd: DDD
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64
Version: 3.1.0
Check: installed package size
Result: NOTE
installed size is 9.8Mb
sub-directories of 1Mb or more:
doc 1.1Mb
libs 8.4Mb
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64