CRAN Package Check Results for Maintainer Dominguez Vidana Socorro <s.dominguez at ht-data.com>

CRAN Package Check Results for Maintainer ‘Dominguez Vidana Socorro <s.dominguez at ht-data.com>’

Last updated on 2025-05-19 08:51:46 CEST.

Package	ERROR	OK
neotoma2	1	12

Version: 1.0.5
Check: examples
Result: ERROR Running examples in 'neotoma2-Ex.R' failed The error most likely occurred in: > ### Name: get_datasets.default > ### Title: Get Dataset Default > ### Aliases: get_datasets.default > > ### ** Examples > > { + # To find all datasets with a min altitude of 12 and a max altitude of 25: + sites_12to25 <- get_datasets(altmin=12, altmax=25, limit=2) + # To find all datasets in Brazil + brazil <- '{"type": "Polygon", + "coordinates": [[ + [-73.125, -9.102096738726443], + [-56.953125,-33.137551192346145], + [-36.5625,-7.710991655433217], + [-68.203125,13.923403897723347], + [-73.125,-9.102096738726443]]]}' + brazil_datasets <- get_datasets(loc = brazil[1], limit=2) + } Warning in options(scipen = 9999999) : invalid 'scipen' 9999999, used 9999 Error in parseURL(base_url, ...) : Internal Server Error (HTTP 500). Failed to Could not connect to the Neotoma API. Check that the path is valid, and check the current status of the Neotoma API services at http://data.neotomadb.org. Calls: get_datasets ... %>% -> cleanNULL -> rapply -> parseURL -> stop_for_status Execution halted Flavor: r-release-windows-x86_64

Version: 1.0.5
Check: tests
Result: ERROR Running 'testthat.R' [86s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(neotoma2) Attaching package: 'neotoma2' The following object is masked from 'package:stats': filter > > test_check("neotoma2") .[ FAIL 2 | WARN 0 | SKIP 48 | PASS 16 ] ══ Skipped tests (48) ══════════════════════════════════════════════════════════ • On CRAN (48): 'test-toJSON.R:2:3', 'test_c.R:10:3', 'test_check_contacts.R:10:3', 'test_chroncontrols.R:5:3', 'test_chroncontrols.R:22:3', 'test_chroncontrols.R:36:3', 'test_clean.R:5:3', 'test_datasets.R:3:3', 'test_datasets.R:19:3', 'test_datasets.R:39:3', 'test_datasets.R:86:3', 'test_datasets.R:109:3', 'test_download.R:3:3', 'test_download.R:32:3', 'test_examples.R:3:3', 'test_filter.R:4:3', 'test_filter.R:27:3', 'test_filter.R:50:3', 'test_filter.R:74:3', 'test_filter.R:111:3', 'test_filter.R:138:3', 'test_filter.R:166:3', 'test_filter.R:192:3', 'test_filter.R:208:3', 'test_filter.R:223:3', 'test_generaltests.R:6:3', 'test_generaltests.R:17:3', 'test_generaltests.R:22:3', 'test_generaltests.R:40:3', 'test_generaltests.R:70:3', 'test_generaltests.R:78:5', 'test_generaltests.R:99:3', 'test_methods.R:3:3', 'test_plotLeaflet.r:6:3', 'test_plotLeaflet.r:18:3', 'test_samples.R:11:3', 'test_setsample.R:8:3', 'test_setsite.r:8:3', 'test_sites.R:9:3', 'test_sites.R:21:3', 'test_sites.R:37:3', 'test_sites.R:49:3', 'test_sites.R:62:3', 'test_sites.R:90:3', 'test_specimens.R:3:3', 'test_specimens.R:11:3', 'test_specimens.R:18:3', 'test_toWide.R:10:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-get_contacts.R:2:3'): Non integer x returns nothing: ─────────── <http_500/http_error/error/condition> Error in `parseURL(baseURL, ...)`: Internal Server Error (HTTP 500). Failed to Could not connect to the Neotoma API. Check that the path is valid, and check the current status of the Neotoma API services at http://data.neotomadb.org. Backtrace: ▆ 1. ├─neotoma2::get_contacts(x = "Goring") at test-get_contacts.R:2:3 2. ├─neotoma2:::get_contacts.default(x = "Goring") 3. │ ├─parseURL(baseURL, ...) %>% cleanNULL() 4. │ └─neotoma2::parseURL(baseURL, ...) 5. │ └─httr::stop_for_status(response, task = "Could not connect to the Neotoma API.\n Check that the path is valid, and check the current\n status of the Neotoma API services at\n http://data.neotomadb.org") 6. └─neotoma2:::cleanNULL(.) 7. └─base::rapply(...) ── Error ('test_generaltests.R:116:3'): Testing the publications calls. ──────── <http_500/http_error/error/condition> Error in `parseURL(baseURL, ...)`: Internal Server Error (HTTP 500). Failed to Could not connect to the Neotoma API. Check that the path is valid, and check the current status of the Neotoma API services at http://data.neotomadb.org. Backtrace: ▆ 1. ├─neotoma2::get_publications(search = "pollen") at test_generaltests.R:116:3 2. ├─neotoma2:::get_publications.default(search = "pollen") 3. │ ├─... %>% pluck("result") 4. │ └─neotoma2::parseURL(baseURL, ...) 5. │ └─httr::stop_for_status(response, task = "Could not connect to the Neotoma API.\n Check that the path is valid, and check the current\n status of the Neotoma API services at\n http://data.neotomadb.org") 6. ├─purrr::pluck(., "result") 7. │ └─purrr:::pluck_raw(.x, list2(...), .default = .default) 8. ├─purrr::pluck(., "data") 9. │ └─purrr:::pluck_raw(.x, list2(...), .default = .default) 10. └─neotoma2:::cleanNULL(.) 11. └─base::rapply(...) [ FAIL 2 | WARN 0 | SKIP 48 | PASS 16 ] Error: Test failures Execution halted Flavor: r-release-windows-x86_64

Version: 1.0.5
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building 'neotoma2-package.Rmd' using rmarkdown Quitting from neotoma2-package.Rmd:94-97 [getsitename] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `parseURL()`: ! Internal Server Error (HTTP 500). Failed to Could not connect to the Neotoma API. Check that the path is valid, and check the current status of the Neotoma API services at http://data.neotomadb.org. --- Backtrace: ▆ 1. ├─neotoma2::get_sites(sitename = "Alexander Lake") 2. └─neotoma2:::get_sites.default(sitename = "Alexander Lake") 3. └─neotoma2::parseURL(base_url, ...) 4. └─httr::stop_for_status(response, task = "Could not connect to the Neotoma API.\n Check that the path is valid, and check the current\n status of the Neotoma API services at\n http://data.neotomadb.org") ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'neotoma2-package.Rmd' failed with diagnostics: Internal Server Error (HTTP 500). Failed to Could not connect to the Neotoma API. Check that the path is valid, and check the current status of the Neotoma API services at http://data.neotomadb.org. --- failed re-building 'neotoma2-package.Rmd' SUMMARY: processing the following file failed: 'neotoma2-package.Rmd' Error: Vignette re-building failed. Execution halted Flavor: r-release-windows-x86_64

CRAN Package Check Results for Maintainer ‘Dominguez Vidana Socorro <s.dominguez at ht-data.com>’

Package neotoma2

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