Last updated on 2024-11-15 19:49:36 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.0.0 | 9.26 | 164.88 | 174.14 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 2.0.0 | 7.24 | 144.41 | 151.65 | OK | |
| r-devel-linux-x86_64-fedora-clang | 2.0.0 | 354.22 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 2.0.0 | 321.88 | OK | |||
| r-devel-windows-x86_64 | 2.0.0 | 13.00 | 191.00 | 204.00 | OK | |
| r-patched-linux-x86_64 | 2.0.0 | 9.34 | 204.93 | 214.27 | OK | |
| r-release-linux-x86_64 | 2.0.0 | 8.14 | 200.83 | 208.97 | OK | |
| r-release-macos-arm64 | 2.0.0 | 107.00 | OK | |||
| r-release-macos-x86_64 | 2.0.0 | 191.00 | OK | |||
| r-release-windows-x86_64 | 2.0.0 | 13.00 | 192.00 | 205.00 | OK | |
| r-oldrel-macos-arm64 | 2.0.0 | 98.00 | OK | |||
| r-oldrel-macos-x86_64 | 2.0.0 | 182.00 | OK | |||
| r-oldrel-windows-x86_64 | 2.0.0 | 17.00 | 230.00 | 247.00 | OK |
Version: 2.0.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [50s/58s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(scoringutils)
scoringutils 2.0.0 introduces major changes. We'd love your feedback!
<https://github.com/epiforecasts/scoringutils/issues>. To use the old version,
run: `remotes::install_github('epiforecasts/scoringutils@v1.2.2')`
This message is displayed once per session.
>
> test_check("scoringutils")
[ FAIL 8 | WARN 0 | SKIP 13 | PASS 535 ]
══ Skipped tests (13) ══════════════════════════════════════════════════════════
• On CRAN (13): 'test-class-forecast.R:133:5', 'test-get-correlations.R:50:3',
'test-get-coverage.R:67:3', 'test-get-coverage.R:90:3',
'test-get-forecast-counts.R:63:3',
'test-helper-quantile-interval-range.R:104:3',
'test-helper-quantile-interval-range.R:158:3',
'test-pairwise_comparison.R:537:3', 'test-pairwise_comparison.R:545:3',
'test-plot_heatmap.R:9:3', 'test-plot_wis.R:24:3', 'test-plot_wis.R:35:3',
'test-plot_wis.R:47:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-metrics-binary.R:17:3'): correct input works ─────────────────
Expected `assert_input_binary(observed, predicted)` to run without any conditions.
i Actually got a <simpleError> with text:
Assertion on 'observed' failed: Must have exactly 2 levels.
── Failure ('test-metrics-binary.R:29:3'): correct input works ─────────────────
Expected `assert_input_binary(observed, predicted = 0.2)` to run without any conditions.
i Actually got a <simpleError> with text:
Assertion on 'observed' failed: Must have exactly 2 levels.
── Failure ('test-metrics-binary.R:33:3'): correct input works ─────────────────
Expected `assert_input_binary(observed, matrix(predicted))` to run without any conditions.
i Actually got a <simpleError> with text:
Assertion on 'observed' failed: Must have exactly 2 levels.
── Error ('test-metrics-binary.R:48:3'): function throws an error for wrong input formats ──
Error in `assert_input_binary(observed = observed, predicted = as.list(predicted))`: Assertion on 'observed' failed: Must have exactly 2 levels.
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-metrics-binary.R:48:3
2. │ └─testthat:::expect_condition_matching(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─scoringutils:::assert_input_binary(observed = observed, predicted = as.list(predicted))
8. └─checkmate::assert_factor(observed, n.levels = 2, min.len = 1)
9. └─checkmate::makeAssertion(x, res, .var.name, add)
10. └─checkmate:::mstop(...)
── Error ('test-metrics-binary.R:120:3'): function throws an error when missing observed or predicted ──
Error in `assert_input_binary(observed, predicted)`: Assertion on 'observed' failed: Must have exactly 2 levels.
Backtrace:
▆
1. ├─testthat::expect_error(brier_score(observed = observed), "argument \"predicted\" is missing, with no default") at test-metrics-binary.R:120:3
2. │ └─testthat:::expect_condition_matching(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─scoringutils::brier_score(observed = observed)
8. └─scoringutils:::assert_input_binary(observed, predicted)
9. └─checkmate::assert_factor(observed, n.levels = 2, min.len = 1)
10. └─checkmate::makeAssertion(x, res, .var.name, add)
11. └─checkmate:::mstop(...)
── Error ('test-metrics-binary.R:134:3'): Brier score works with different inputs ──
Error in `assert_input_binary(observed, predicted)`: Assertion on 'observed' failed: Must have exactly 2 levels.
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-metrics-binary.R:134:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─scoringutils::brier_score(observed, predicted = 0.2)
5. └─scoringutils:::assert_input_binary(observed, predicted)
6. └─checkmate::assert_factor(observed, n.levels = 2, min.len = 1)
7. └─checkmate::makeAssertion(x, res, .var.name, add)
8. └─checkmate:::mstop(...)
── Error ('test-metrics-binary.R:156:3'): Binary metrics work within and outside of `score()` ──
Error in `assert_forecast(data)`: ! Checking `forecast`: Input looks like a binary forecast, but found the following issue: Assertion on 'observed' failed: Must have exactly 2 levels.
Backtrace:
▆
1. ├─scoringutils::score(as_forecast_binary(df)) at test-metrics-binary.R:156:3
2. └─scoringutils::as_forecast_binary(df)
3. ├─scoringutils::assert_forecast(data)
4. └─scoringutils:::assert_forecast.forecast_binary(data)
5. └─cli::cli_abort(c(`!` = "Checking `forecast`: Input looks like a binary forecast, but\n found the following issue: {input_check}"))
6. └─rlang::abort(...)
── Error ('test-metrics-binary.R:171:3'): `logs_binary()` works as expected ────
Error in `assert_input_binary(observed, predicted)`: Assertion on 'observed' failed: Must have exactly 2 levels.
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-metrics-binary.R:171:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─scoringutils::logs_binary(observed, predicted)
5. └─scoringutils:::assert_input_binary(observed, predicted)
6. └─checkmate::assert_factor(observed, n.levels = 2, min.len = 1)
7. └─checkmate::makeAssertion(x, res, .var.name, add)
8. └─checkmate:::mstop(...)
[ FAIL 8 | WARN 0 | SKIP 13 | PASS 535 ]
Deleting unused snapshots:
• get-correlations/plot-correlation.svg
• get-coverage/plot-interval-coverage.svg
• get-coverage/plot-quantile-coverage.svg
• get-forecast-counts/plot-available-forecasts.svg
• pairwise_comparison/plot-pairwise-comparison-pval.svg
• pairwise_comparison/plot-pairwise-comparison.svg
• plot_heatmap/plot-heatmap.svg
• plot_wis/plot-wis-flip.svg
• plot_wis/plot-wis-no-relative.svg
• plot_wis/plot-wis.svg
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang