Last updated on 2025-04-22 19:52:30 CEST.
| Package | ERROR | OK |
|---|---|---|
| fastml | 13 | |
| genSEIR | 13 | |
| MVN | 13 | |
| PubChemR | 1 | 12 |
| rPDBapi | 13 |
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: ERROR: 1, OK: 12
Version: 2.1.4
Check: tests
Result: ERROR
Running 'testthat.R' [60s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(PubChemR)
>
> # Functions used globally in package tests (testthat) ----
> allSuccess <- function(object){
+ all(unlist(lapply(object$result, "[[", "success")))
+ }
>
> testRequest <- function(object, ...){
+ test_that(paste0("pulling via '", request_args(object, "namespace"), "' is succesfull"), {
+ expect_true(allSuccess(object))
+ })
+
+ test_that("prints output to the R Console", {
+ expect_output(print(object))
+ })
+ }
>
> # Set 'skipTests' FALSE to run test codes. This is set TRUE to skip
> # all tests on GitHub actions since some of PubChem requests were incomplete due to
> # timeout and/or API related issues. BUILD & CHECK actions on GitHub returns error
> # even if all tests were passed on local installations of R.
> skipTests <- FALSE
>
> if (!skipTests){
+ test_check("PubChemR")
+ }
The file has been saved to 'D:\temp\2025_04_20_01_50_00_2710\RtmpGAqGYJ/aspirin.json'
The file has been saved to 'D:\temp\2025_04_20_01_50_00_2710\RtmpGAqGYJ/aspirin.json'
The file has been saved to 'D:\temp\2025_04_20_01_50_00_2710\RtmpGAqGYJ/aspirin.json'
The file has been saved to 'D:\temp\2025_04_20_01_50_00_2710\RtmpGAqGYJ/aspirin.json'
The file has been saved to 'D:\temp\2025_04_20_01_50_00_2710\RtmpGAqGYJ/aspirin.sdf'
Request failed [400]. Retrying in 1 seconds...
Request failed [400]. Retrying in 7.9 seconds...
SDF file saved successfully:
File Name: 'aspirin_20250420_085647.sdf'
Saved at: D:\temp\2025_04_20_01_50_00_2710\RtmpGAqGYJ
SDF file saved successfully:
File Name: 'file.sdf'
Saved at: D:\temp\2025_04_20_01_50_00_2710\RtmpGAqGYJ
'path' is not specified. Saving files into a temporary folder.
SDF file saved successfully:
File Name: 'file.sdf'
Saved at: D:\temp\2025_04_20_01_50_00_2710\RtmpGAqGYJ
PubChem Substance Details (comment)
Same as: <a href="http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?sid=7847177">D00109</a>
Is a reactant of enzyme EC: 3.1.1.55
PubChem Substance Details (comment)
Same as: <a href="http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?sid=7847177">D00109</a>
Is a reactant of enzyme EC: 3.1.1.55
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 169 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-get_cids.R:20:5'): pulling cids via 'smiles' is succesfull ───
allSuccess(object) is not TRUE
`actual`: FALSE
`expected`: TRUE
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 169 ]
Error: Test failures
Execution halted
Flavor: r-devel-windows-x86_64
Current CRAN status: OK: 13