Last updated on 2025-02-24 19:50:47 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.2.1 | 6.47 | 127.09 | 133.56 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 0.2.2 | 5.15 | 82.96 | 88.11 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.2.2 | 210.59 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.2.2 | 213.63 | OK | |||
| r-devel-macos-arm64 | 0.2.1 | 67.00 | OK | |||
| r-devel-macos-x86_64 | 0.2.2 | 170.00 | OK | |||
| r-devel-windows-x86_64 | 0.2.1 | 9.00 | 135.00 | 144.00 | NOTE | |
| r-patched-linux-x86_64 | 0.2.1 | 8.39 | 113.37 | 121.76 | OK | |
| r-release-linux-x86_64 | 0.2.1 | 6.28 | 113.95 | 120.23 | ERROR | |
| r-release-macos-arm64 | 0.2.1 | 73.00 | OK | |||
| r-release-macos-x86_64 | 0.2.2 | 160.00 | OK | |||
| r-release-windows-x86_64 | 0.2.1 | 10.00 | 134.00 | 144.00 | OK | |
| r-oldrel-macos-arm64 | 0.2.1 | 79.00 | OK | |||
| r-oldrel-macos-x86_64 | 0.2.2 | 133.00 | OK | |||
| r-oldrel-windows-x86_64 | 0.2.2 | 8.00 | 153.00 | 161.00 | OK |
Version: 0.2.1
Check: DESCRIPTION meta-information
Result: NOTE
Missing dependency on R >= 4.1.0 because package code uses the pipe
|> or function shorthand \(...) syntax added in R 4.1.0.
File(s) using such syntax:
‘formula_interface.r’ ‘node_time_to_event.r’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-windows-x86_64
Version: 0.2.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [37s/53s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(simDAG)
> library(testthat)
> library(data.table)
> library(igraph)
Attaching package: 'igraph'
The following object is masked from 'package:testthat':
compare
The following objects are masked from 'package:stats':
decompose, spectrum
The following object is masked from 'package:base':
union
>
> data.table::setDTthreads(1)
>
> test_check("simDAG")
Loading required namespace: MASS
Loading required namespace: ggplot2
Loading required namespace: ggforce
t = 1 node = sickness2
t = 1 node = sickness1
t = 2 node = sickness2
t = 2 node = sickness1
t = 3 node = sickness2
t = 3 node = sickness1
t = 4 node = sickness2
t = 4 node = sickness1
t = 5 node = sickness2
t = 5 node = sickness1
Loading required namespace: Rfast
Loading required namespace: doSNOW
Loading required namespace: doRNG
starting worker pid=2976561 on localhost:11877 at 05:12:28.430
starting worker pid=2976560 on localhost:11877 at 05:12:28.497
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| | 0%Loading required package: simDAG
loaded simDAG and set parent environment
Loading required package: foreach
Loading required package: rngtools
Loading required package: simDAG
loaded simDAG and set parent environment
Loading required package: foreach
Loading required package: rngtools
|
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|===================== | 30%
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|============================ | 40%
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|=================================== | 50%
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|========================================== | 60%
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|================================================= | 70%
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|======================================================== | 80%
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|======================================================================| 100%starting worker pid=2977034 on localhost:11877 at 05:12:29.733
starting worker pid=2977035 on localhost:11877 at 05:12:29.781
Loading required package: simDAG
loaded simDAG and set parent environment
Loading required package: simDAG
Loading required package: foreach
loaded simDAG and set parent environment
Loading required package: rngtools
Loading required package: foreach
Loading required package: rngtools
starting worker pid=2978147 on localhost:11877 at 05:12:32.569
starting worker pid=2978148 on localhost:11877 at 05:12:32.583
Loading required package: simDAG
loaded simDAG and set parent environment
Loading required package: simDAG
Loading required package: foreach
loaded simDAG and set parent environment
Loading required package: rngtools
Loading required package: foreach
Loading required package: rngtools
[ FAIL 2 | WARN 14 | SKIP 43 | PASS 611 ]
══ Skipped tests (43) ══════════════════════════════════════════════════════════
• On CRAN (43): 'test_DAG.node_S3.r:6:3', 'test_DAG.node_S3.r:11:3',
'test_DAG.node_S3.r:16:3', 'test_DAG.node_S3.r:21:3',
'test_DAG.node_S3.r:27:3', 'test_DAG.node_S3.r:34:3',
'test_DAG.node_S3.r:39:3', 'test_DAG.node_S3.r:44:3',
'test_DAG.node_S3.r:49:3', 'test_DAG.node_S3.r:55:3', 'test_dag.r:17:3',
'test_dag.r:30:3', 'test_dag.r:37:3', 'test_dag.r:50:3', 'test_dag.r:66:3',
'test_node.r:519:3', 'test_plot.DAG.r:12:3', 'test_plot.DAG.r:16:3',
'test_plot.DAG.r:20:3', 'test_plot.DAG.r:24:3', 'test_plot.DAG.r:28:3',
'test_plot.DAG.r:32:3', 'test_plot.DAG.r:36:3', 'test_plot.DAG.r:41:3',
'test_plot.DAG.r:45:3', 'test_plot.DAG.r:53:3', 'test_plot.DAG.r:60:3',
'test_plot.DAG.r:65:3', 'test_plot.DAG.r:70:3', 'test_plot.DAG.r:101:3',
'test_plot.DAG.r:105:3', 'test_plot.DAG.r:109:3', 'test_plot.simDT.r:25:3',
'test_plot.simDT.r:29:3', 'test_plot.simDT.r:33:3', 'test_plot.simDT.r:37:3',
'test_plot.simDT.r:41:3', 'test_plot.simDT.r:49:3', 'test_plot.simDT.r:57:3',
'test_simDT_S3.r:12:3', 'test_simDT_S3.r:17:3', 'test_simDT_S3.r:22:3',
'test_simDT_S3.r:26:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_sim_discrete_time.r:290:3'): helpful error message formula error ──
Error: An error occured when interpreting the formula of node 'B'. The message was:
Error: Error in `[.data.table`(mod_mat, , args$parents, with = FALSE): columns not found: [A, C]
This error may occur when one of the terms in a supplied formula does not match any variables in the generated data.
Please check whether all terms in your supplied formula occur in the data generated up to this point.
The variables currently available in data are:
(Intercept), ATRUE, B, .id
Backtrace:
▆
1. ├─testthat::expect_error(...) at test_sim_discrete_time.r:290:3
2. │ └─testthat:::expect_condition_matching(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─simDAG::sim_discrete_time(dag, n_sim = 100, max_t = 3)
8. └─base::tryCatch(...)
9. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
10. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
11. └─value[[3L]](cond)
── Error ('test_sim_from_dag.r:102:3'): helpful error message formula error ────
Error: An error occured when interpreting the formula of node 'B'. The message was:
Error: Error in `[.data.table`(mod_mat, , args$parents, with = FALSE): columns not found: [A, C]
This error may occur when one of the terms in a supplied formula does not match any variables in the generated data.
Please check whether all terms in your supplied formula occur in the data generated up to this point.
The variables currently available in data are:
(Intercept), ATRUE
Backtrace:
▆
1. ├─testthat::expect_error(...) at test_sim_from_dag.r:102:3
2. │ └─testthat:::expect_condition_matching(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─simDAG::sim_from_dag(dag, n_sim = 100)
8. └─base::tryCatch(...)
9. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
10. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
11. └─value[[3L]](cond)
[ FAIL 2 | WARN 14 | SKIP 43 | PASS 611 ]
Error: Test failures
Execution halted
Flavor: r-release-linux-x86_64