Last updated on 2025-02-24 19:50:49 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.10.7 | 3.68 | 76.66 | 80.34 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.10.7 | 2.90 | 55.37 | 58.27 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.10.7 | 129.27 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.10.7 | 155.59 | ERROR | |||
| r-devel-macos-arm64 | 0.10.7 | 61.00 | OK | |||
| r-devel-macos-x86_64 | 0.10.7 | 141.00 | OK | |||
| r-devel-windows-x86_64 | 0.10.7 | 8.00 | 135.00 | 143.00 | OK | |
| r-patched-linux-x86_64 | 0.10.7 | 4.38 | 70.86 | 75.24 | OK | |
| r-release-linux-x86_64 | 0.10.7 | 3.42 | 71.47 | 74.89 | OK | |
| r-release-macos-arm64 | 0.10.7 | 66.00 | OK | |||
| r-release-macos-x86_64 | 0.10.7 | 142.00 | OK | |||
| r-release-windows-x86_64 | 0.10.7 | 9.00 | 107.00 | 116.00 | OK | |
| r-oldrel-macos-arm64 | 0.10.7 | 80.00 | OK | |||
| r-oldrel-macos-x86_64 | 0.10.7 | 167.00 | OK | |||
| r-oldrel-windows-x86_64 | 0.10.7 | 10.00 | 128.00 | 138.00 | OK |
Version: 0.10.7
Check: tests
Result: ERROR
Running ‘testthat.R’ [60s/82s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(taxonomizr)
> library(data.table)
> library(RSQLite)
> test_check("taxonomizr")
Download status: 0 done; 1 in progress (0 b/s). Total size: 359 b (100%)...
Download status: 1 done; 0 in progress. Total size: 359 b (100%)... done!
Download status: 1 done; 0 in progress. Total size: 359 b (100%)... done!
Download status: 1 done; 0 in progress. Total size: 359 b (100%)... done!
Download status: 1 done; 0 in progress. Total size: 359 b (100%)... done!
Download status: 1 done; 0 in progress. Total size: 359 b (100%)... done!
Download status: 1 done; 0 in progress. Total size: 4 b (100%)... done!
Download status: 1 done; 0 in progress. Total size: 4 b (100%)... done!
Download status: 1 done; 0 in progress. Total size: 4 b (100%)... done!
Download status: 1 done; 0 in progress. Total size: 4 b (100%)... done!
Download status: 1 done; 0 in progress. Total size: 4 b (100%)... done!
Download status: 1 done; 0 in progress. Total size: 4 b (100%)... done!
Download status: 1 done; 0 in progress. Total size: 4 b (100%)... done!
Download status: 1 done; 0 in progress. Total size: 4 b (100%)... done!
Download status: 1 done; 0 in progress. Total size: 4 b (100%)... done!
Download status: 1 done; 0 in progress. Total size: 0 b ... done!
Download status: 1 done; 0 in progress. Total size: 0 b ... done!
Download status: 1 done; 0 in progress. Total size: 359 b (100%)... done!
Download status: 1 done; 0 in progress. Total size: 15 b (100%)... done!
Download status: 1 done; 0 in progress. Total size: 15 b (100%)... done!
Download status: 1 done; 0 in progress. Total size: 15 b (100%)... done!
Download status: 1 done; 0 in progress. Total size: 15 b (100%)... done!
Download status: 1 done; 0 in progress. Total size: 15 b (100%)... done!
Download status: 1 done; 0 in progress. Total size: 0 b ... done!
Download status: 1 done; 0 in progress. Total size: 988 b (100%)... done!
[ FAIL 2 | WARN 2 | SKIP 0 | PASS 363 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_taxa.R:148:3'): Test trimTaxa ────────────────────────────────
`taxonomizr:::trimTaxa(tmp, tmp2)` threw an error.
Message: NA in coercion to Rboolean
Class: simpleError/error/condition
Backtrace:
▆
1. ├─testthat::expect_error(taxonomizr:::trimTaxa(tmp, tmp2), NA) at test_taxa.R:148:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─taxonomizr:::trimTaxa(tmp, tmp2)
7. ├─R.utils::gunzip(inFile, tmp, remove = FALSE)
8. └─R.utils::gunzip.default(inFile, tmp, remove = FALSE)
9. ├─R.utils::decompressFile(...)
10. └─R.utils::decompressFile.default(...)
11. ├─R.utils::popTemporaryFile(destnameT)
12. └─R.utils::popTemporaryFile.default(destnameT)
13. └─base::regexpr(pattern, "", pathnameT)
── Error ('test_taxa.R:149:3'): Test trimTaxa ──────────────────────────────────
Error in `file(con, "r")`: cannot open the connection
Backtrace:
▆
1. ├─testthat::expect_equal(readLines(tmp2), c("2\t3", "3\t4", "4\t5")) at test_taxa.R:149:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─base::readLines(tmp2)
5. └─base::file(con, "r")
[ FAIL 2 | WARN 2 | SKIP 0 | PASS 363 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.10.7
Check: tests
Result: ERROR
Running ‘testthat.R’ [76s/144s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(taxonomizr)
> library(data.table)
> library(RSQLite)
> test_check("taxonomizr")
Download status: 0 done; 1 in progress (0 b/s). Total size: 359 b (100%)...
Download status: 1 done; 0 in progress. Total size: 359 b (100%)... done!
Download status: 1 done; 0 in progress. Total size: 359 b (100%)... done!
Download status: 1 done; 0 in progress. Total size: 359 b (100%)... done!
Download status: 1 done; 0 in progress. Total size: 359 b (100%)... done!
Download status: 1 done; 0 in progress. Total size: 359 b (100%)... done!
Download status: 1 done; 0 in progress. Total size: 4 b (100%)... done!
Download status: 1 done; 0 in progress. Total size: 4 b (100%)... done!
Download status: 1 done; 0 in progress. Total size: 4 b (100%)... done!
Download status: 1 done; 0 in progress. Total size: 4 b (100%)... done!
Download status: 1 done; 0 in progress. Total size: 4 b (100%)... done!
Download status: 1 done; 0 in progress. Total size: 4 b (100%)... done!
Download status: 1 done; 0 in progress. Total size: 4 b (100%)... done!
Download status: 1 done; 0 in progress. Total size: 4 b (100%)... done!
Download status: 1 done; 0 in progress. Total size: 4 b (100%)... done!
Download status: 1 done; 0 in progress. Total size: 0 b ... done!
Download status: 1 done; 0 in progress. Total size: 0 b ... done!
Download status: 1 done; 0 in progress. Total size: 359 b (100%)... done!
Download status: 1 done; 0 in progress. Total size: 15 b (100%)... done!
Download status: 1 done; 0 in progress. Total size: 15 b (100%)... done!
Download status: 1 done; 0 in progress. Total size: 15 b (100%)... done!
Download status: 1 done; 0 in progress. Total size: 15 b (100%)... done!
Download status: 1 done; 0 in progress. Total size: 15 b (100%)... done!
Download status: 1 done; 0 in progress. Total size: 0 b ... done!
Download status: 0 done; 1 in progress (0 b/s). Total size: 200 b (??%)...
Download status: 1 done; 0 in progress. Total size: 988 b (100%)... done!
[ FAIL 2 | WARN 2 | SKIP 0 | PASS 363 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_taxa.R:148:3'): Test trimTaxa ────────────────────────────────
`taxonomizr:::trimTaxa(tmp, tmp2)` threw an error.
Message: NA in coercion to Rboolean
Class: simpleError/error/condition
Backtrace:
▆
1. ├─testthat::expect_error(taxonomizr:::trimTaxa(tmp, tmp2), NA) at test_taxa.R:148:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─taxonomizr:::trimTaxa(tmp, tmp2)
7. ├─R.utils::gunzip(inFile, tmp, remove = FALSE)
8. └─R.utils::gunzip.default(inFile, tmp, remove = FALSE)
9. ├─R.utils::decompressFile(...)
10. └─R.utils::decompressFile.default(...)
11. ├─R.utils::popTemporaryFile(destnameT)
12. └─R.utils::popTemporaryFile.default(destnameT)
13. └─base::regexpr(pattern, "", pathnameT)
── Error ('test_taxa.R:149:3'): Test trimTaxa ──────────────────────────────────
Error in `file(con, "r")`: cannot open the connection
Backtrace:
▆
1. ├─testthat::expect_equal(readLines(tmp2), c("2\t3", "3\t4", "4\t5")) at test_taxa.R:149:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─base::readLines(tmp2)
5. └─base::file(con, "r")
[ FAIL 2 | WARN 2 | SKIP 0 | PASS 363 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc