PhenotypeR: Assess Study Cohorts Using a Common Data Model

Phenotype study cohorts in data mapped to the Observational Medical Outcomes Partnership Common Data Model. Diagnostics are run at the database, code list, cohort, and population level to assess whether study cohorts are ready for research.

Version:	0.1.0
Depends:	R (≥ 4.0)
Imports:	CodelistGenerator (≥ 3.3.1), CohortCharacteristics (≥ 0.4.0), CohortConstructor (≥ 0.3.2), cli, dplyr, IncidencePrevalence (≥ 0.9.0), omopgenerics (≥ 0.4.0), OmopSketch (≥ 0.1.2), magrittr, purrr, rlang, vctrs, usethis
Suggests:	CDMConnector (≥ 1.6.1), duckdb, DBI, gt, omock, testthat (≥ 3.0.0), knitr, visOmopResults (≥ 0.5.0), glue, RPostgres, PatientProfiles (≥ 1.2.2), ggplot2, ggpubr, stringr, shiny, DiagrammeR, sortable, shinycssloaders, here, DT, bslib, shinyWidgets, plotly, tidyr
Published:	2024-12-06
DOI:	10.32614/CRAN.package.PhenotypeR
Author:	Edward Burn [aut, cre], Marti Catala [aut], Xihang Chen [aut], Marta Alcalde-Herraiz [aut], Albert Prats-Uribe [aut]
Maintainer:	Edward Burn <edward.burn at ndorms.ox.ac.uk>
License:	Apache License (≥ 2)
URL:	https://ohdsi.github.io/PhenotypeR/
NeedsCompilation:	no
Materials:	README
CRAN checks:	PhenotypeR results

Documentation:

Reference manual:	PhenotypeR.pdf
Vignettes:	a01_DatabaseDiagnostics (source, R code) a02_CodelistDiagnostics (source, R code) a03_CohortDiagnostics (source, R code) a04_MatchedDiagnostics (source, R code) a05_PopulationDiagnostics (source, R code)

Downloads:

Package source:	PhenotypeR_0.1.0.tar.gz
Windows binaries:	r-devel: PhenotypeR_0.1.0.zip, r-release: PhenotypeR_0.1.0.zip, r-oldrel: PhenotypeR_0.1.0.zip
macOS binaries:	r-release (arm64): PhenotypeR_0.1.0.tgz, r-oldrel (arm64): PhenotypeR_0.1.0.tgz, r-release (x86_64): PhenotypeR_0.1.0.tgz, r-oldrel (x86_64): PhenotypeR_0.1.0.tgz

Linking:

Please use the canonical form https://CRAN.R-project.org/package=PhenotypeR to link to this page.