STRMPS

The STRMPS package is designed to extract and collect the short tandem repeat (STR) information from the fastq files produced by massively parallel sequencing (MPS).

Installation

The STRMPS-package depends on R (>= 4.4), methods, utils, tidyr, tibble, dplyr, stringr, purrr, parallel, as well as the bioconductor packages Biostrings, pwalign, ShortRead, and IRanges. Version 0.5.8 is available on CRAN, but to get the newest version devtools is needed to install the package from github.

From R, run the following commands:

install.packages("devtools")
devtools::install_github("svilsen/STRMPS")

License

This project is licensed under the MIT License.