An R package for pre- and post-processing in phylogenetic and divergence-times Bayesian inference. You can use it for processing output of phylogenetic bayesian programs (such as Beast or MrBayes) or to prepare input files and decision making. It also supports similarity calculations using intersection for comparing two given densities (e.g. prior vs. posterior). Functionality has been added for interacting with output from parsimony analyses in TNT, and concatenating morphological and molecular matrices for FBD analyses or standard topology estimation.
For now only the github development version is available. You can
install it using devtools:
install.packages("tbea")
devtools::install_github("gaballench/tbea")Once the package makes its way into CRAN the standard
install.packages may be used for installing stable
versions.
This package was created and maintained by Gustavo A. Ballen (@gaballench) and Sandra Reinales (@spreinalesl).
If you find a bug or unexpected behavior, please file an issue.