pedprobr: Probability Computations on Pedigrees
An implementation of the Elston-Stewart algorithm for calculating pedigree likelihoods given genetic marker data (Elston and Stewart (1971) <doi:10.1159/000152448>). The standard algorithm is extended to allow inbred founders. 'pedprobr' is part of the 'ped suite', a collection of packages for pedigree analysis in R. In particular, 'pedprobr' depends on 'pedtools' for pedigree manipulations and 'pedmut' for mutation modelling. For more information, see 'Pedigree Analysis in R' (Vigeland, 2021, ISBN:9780128244302).
| Version: | 0.9.4 |
| Depends: | R (≥ 4.1.0), pedtools (≥ 2.2.0) |
| Imports: | pedmut (≥ 0.5.0) |
| Suggests: | testthat |
| Published: | 2024-05-08 |
| DOI: | 10.32614/CRAN.package.pedprobr |
| Author: | Magnus Dehli Vigeland
 [aut, cre] |
| Maintainer: | Magnus Dehli Vigeland <m.d.vigeland at medisin.uio.no> |
| BugReports: | https://github.com/magnusdv/pedprobr/issues |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| URL: | https://github.com/magnusdv/pedprobr |
| NeedsCompilation: | no |
| SystemRequirements: | MERLIN (https://csg.sph.umich.edu/abecasis/merlin/) for calculations involving multiple linked markers. |
| Language: | en-GB |
| Citation: | pedprobr citation info |
| Materials: | README NEWS |
| CRAN checks: | pedprobr results |
Documentation:
| Reference manual: | pedprobr.pdf |
Downloads:
| Package source: | pedprobr_0.9.4.tar.gz |
| Windows binaries: | r-devel: pedprobr_0.9.4.zip, r-release: pedprobr_0.9.4.zip, r-oldrel: pedprobr_0.9.4.zip |
| macOS binaries: | r-release (arm64): pedprobr_0.9.4.tgz, r-oldrel (arm64): pedprobr_0.9.4.tgz, r-release (x86_64): pedprobr_0.9.4.tgz, r-oldrel (x86_64): pedprobr_0.9.4.tgz |
| Old sources: | pedprobr archive |
Reverse dependencies:
| Reverse depends: | pedsuite |
| Reverse imports: | dvir, forensIT, forrel, KLINK, paramlink2, pedbuildr, segregatr |
Linking:
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