Last updated on 2024-12-18 19:49:34 CET.
Package | FAIL | ERROR | NOTE | OK |
---|---|---|---|---|
arkdb | 1 | 1 | 11 | |
codemeta | 13 | |||
codemetar | 3 | 10 | ||
contentid | 13 | |||
duckdbfs | 1 | 1 | 11 | |
earthdatalogin | 13 | |||
EcoNetGen | 13 | |||
EML | 3 | 10 | ||
emld | 8 | 5 | ||
gbifdb | 1 | 12 | ||
knitcitations | 13 | |||
minioclient | 13 | |||
neonstore | 2 | 11 | ||
piggyback | 13 | |||
pmc | 13 | |||
rdflib | 13 | |||
rfigshare | 10 | 3 | ||
rfishbase | 13 | |||
RNeXML | 10 | 3 | ||
sarsop | 6 | 7 | ||
taxadb | 13 | |||
taxalight | 13 | |||
treebase | 13 | |||
virtuoso | 13 |
Current CRAN status: ERROR: 1, NOTE: 1, OK: 11
Version: 0.0.18
Check: tests
Result: ERROR
Running ‘spelling.R’ [0s/0s]
Running ‘testthat.R’ [44s/42s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
6. └─arkdb::ark(...)
7. └─arkdb:::ark_file(...)
8. └─arkdb:::keep_open(...)
9. └─streamable_table$write(data, con, omit_header = TRUE, filename = counter)
10. └─arrow::write_parquet(x, sink = path, ...)
11. ├─ParquetFileWriter$create(...)
12. │ └─arrow:::parquet___arrow___ParquetFileWriter__Open(...)
13. └─ParquetWriterProperties$create(...)
14. └─arrow:::parquet___WriterProperties___Builder__create()
[ FAIL 3 | WARN 8 | SKIP 8 | PASS 36 ]
Error: Test failures
In addition: Warning message:
Connection is garbage-collected, use dbDisconnect() to avoid this.
Execution halted
Flavor: r-release-macos-arm64
Version: 0.0.18
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘arrow’
Flavor: r-release-macos-x86_64
Version: 0.0.18
Check: Rd cross-references
Result: NOTE
Package unavailable to check Rd xrefs: ‘arrow’
Flavor: r-release-macos-x86_64
Current CRAN status: OK: 13
Current CRAN status: NOTE: 3, OK: 10
Version: 0.3.5
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
create_codemeta.Rd: write_json
write_codemeta.Rd: write_json
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: FAIL: 1, ERROR: 1, OK: 11
Version: 0.0.9
Check: tests
Result: ERROR
Running ‘spelling.R’
Running ‘testthat.R’ [6s/17s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(duckdbfs)
>
>
>
>
> test_check("duckdbfs")
*** caught segfault ***
address 0x1, cause 'memory not mapped'
Traceback:
1: rapi_execute(stmt, arrow, integer64)
2: withCallingHandlers(expr, condition = function(cnd) { { .__handler_frame__. <- TRUE .__setup_frame__. <- frame if (inherits(cnd, "message")) { except <- c("warning", "error") } else if (inherits(cnd, "warning")) { except <- "error" } else { except <- "" } } while (!is_null(cnd)) { if (inherits(cnd, "error")) { out <- handlers[[1L]](cnd) if (!inherits(out, "rlang_zap")) throw(out) } inherit <- .subset2(.subset2(cnd, "rlang"), "inherit") if (is_false(inherit)) { return() } cnd <- .subset2(cnd, "parent") }})
3: doTryCatch(return(expr), name, parentenv, handler)
4: tryCatchOne(expr, names, parentenv, handlers[[1L]])
5: tryCatchList(expr, classes, parentenv, handlers)
6: tryCatch(withCallingHandlers(expr, condition = function(cnd) { { .__handler_frame__. <- TRUE .__setup_frame__. <- frame if (inherits(cnd, "message")) { except <- c("warning", "error") } else if (inherits(cnd, "warning")) { except <- "error" } else { except <- "" } } while (!is_null(cnd)) { if (inherits(cnd, "error")) { out <- handlers[[1L]](cnd) if (!inherits(out, "rlang_zap")) throw(out) } inherit <- .subset2(.subset2(cnd, "rlang"), "inherit") if (is_false(inherit)) { return() } cnd <- .subset2(cnd, "parent") }}), stackOverflowError = handlers[[1L]])
7: rlang::try_fetch(rapi_execute(stmt, arrow, integer64), error = function(e) { rethrow_error_from_rapi(e, call)})
8: rethrow_rapi_execute(res@stmt_lst$ref, res@arrow, res@connection@bigint == "integer64")
9: duckdb_execute(res)
10: duckdb_result(connection = conn, stmt_lst = stmt_lst, arrow = arrow)
11: .local(conn, statement, ...)
12: dbSendQuery(conn, statement, ...)
13: dbSendQuery(conn, statement, ...)
14: dbSendStatement(conn, statement, ...)
15: dbSendStatement(conn, statement, ...)
16: DBI::dbExecute(conn, glue::glue("LOAD '{extension}';"))
17: DBI::dbExecute(conn, glue::glue("LOAD '{extension}';"))
18: load_extension("httpfs", conn = conn, nightly = nightly, force = force)
19: load_httpfs(nightly = FALSE, force = FALSE)
20: eval(code, test_env)
21: eval(code, test_env)
22: withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error)
23: doTryCatch(return(expr), name, parentenv, handler)
24: tryCatchOne(expr, names, parentenv, handlers[[1L]])
25: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
26: doTryCatch(return(expr), name, parentenv, handler)
27: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]), names[nh], parentenv, handlers[[nh]])
28: tryCatchList(expr, classes, parentenv, handlers)
29: tryCatch(withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error), error = handle_fatal, skip = function(e) { })
30: test_code(desc, code, env = parent.frame(), reporter = reporter)
31: test_that("extensions installation", { load_httpfs(nightly = FALSE, force = FALSE) exts <- duckdb_extensions() status <- exts[exts$extension_name == "httpfs", ] expect_true(status$installed) expect_equal(status$installed_from, "core") load_spatial(nightly = FALSE, force = TRUE) exts <- duckdb_extensions() status <- exts[exts$extension_name == "httpfs", ] expect_true(status$installed) expect_equal(status$installed_from, "core")})
32: eval(code, test_env)
33: eval(code, test_env)
34: withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error)
35: doTryCatch(return(expr), name, parentenv, handler)
36: tryCatchOne(expr, names, parentenv, handlers[[1L]])
37: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
38: doTryCatch(return(expr), name, parentenv, handler)
39: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]), names[nh], parentenv, handlers[[nh]])
40: tryCatchList(expr, classes, parentenv, handlers)
41: tryCatch(withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error), error = handle_fatal, skip = function(e) { })
42: test_code(test = NULL, code = exprs, env = env, reporter = get_reporter() %||% StopReporter$new())
43: source_file(path, env = env(env), desc = desc, error_call = error_call)
44: FUN(X[[i]], ...)
45: lapply(test_paths, test_one_file, env = env, desc = desc, error_call = error_call)
46: doTryCatch(return(expr), name, parentenv, handler)
47: tryCatchOne(expr, names, parentenv, handlers[[1L]])
48: tryCatchList(expr, classes, parentenv, handlers)
49: tryCatch(code, testthat_abort_reporter = function(cnd) { cat(conditionMessage(cnd), "\n") NULL})
50: with_reporter(reporters$multi, lapply(test_paths, test_one_file, env = env, desc = desc, error_call = error_call))
51: test_files_serial(test_dir = test_dir, test_package = test_package, test_paths = test_paths, load_helpers = load_helpers, reporter = reporter, env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, desc = desc, load_package = load_package, error_call = error_call)
52: test_files(test_dir = path, test_paths = test_paths, test_package = package, reporter = reporter, load_helpers = load_helpers, env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, load_package = load_package, parallel = parallel)
53: test_dir("testthat", package = package, reporter = reporter, ..., load_package = "installed")
54: test_check("duckdbfs")
An irrecoverable exception occurred. R is aborting now ...
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.0.9
Check: PDF version of manual
Result: FAIL
Check process probably crashed or hung up for 20 minutes ... killed
Most likely this happened in the example checks (?),
if not, ignore the following last lines of example output:
+ ## End(Don't show)
+ write_dataset(mtcars, tempfile())
+ ## Don't show:
+ }) # examplesIf
> ## End(Don't show)
> ## Don't show:
> if (interactive()) (if (getRversion() >= "3.4") withAutoprint else force)({ # examplesIf
+ ## End(Don't show)
+ write_dataset(mtcars, tempdir())
+ ## Don't show:
+ }) # examplesIf
> ## End(Don't show)
>
>
>
> ### * <FOOTER>
> ###
> cleanEx()
> options(digits = 7L)
> base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n")
Time elapsed: 1.36 0.23 1.57 NA NA
> grDevices::dev.off()
null device
1
> ###
> ### Local variables: ***
> ### mode: outline-minor ***
> ### outline-regexp: "\\(> \\)?### [*]+" ***
> ### End: ***
> quit('no')
======== End of example output (where/before crash/hang up occured ?) ========
Flavor: r-devel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: NOTE: 3, OK: 10
Version: 2.0.6.1
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
write_eml.Rd: write_xml
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 2.0.6.1
Flags: --no-vignettes
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
write_eml.Rd: write_xml
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavor: r-devel-windows-x86_64
Current CRAN status: NOTE: 8, OK: 5
Version: 0.5.1
Check: LazyData
Result: NOTE
'LazyData' is specified without a 'data' directory
Flavors: r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: ERROR: 1, OK: 12
Version: 1.0.0
Check: tests
Result: ERROR
Running ‘spelling.R’ [0s/0s]
Running ‘testthat.R’ [1s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• On CRAN (1): 'test_gbifdb.R:30:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_gbifdb.R:16:3'): gbif_local() ──────────────────────────────────
Error: This build of the arrow package does not support Datasets
Backtrace:
▆
1. └─gbifdb::gbif_local(path, backend = "arrow") at test_gbifdb.R:16:3
2. └─arrow::open_dataset(dir)
3. └─arrow:::stop_if_no_datasets()
[ FAIL 1 | WARN 0 | SKIP 1 | PASS 2 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-arm64
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: NOTE: 2, OK: 11
Version: 0.5.1
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘rhdf5’
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: NOTE: 10, OK: 3
Version: 0.3.8
Check: Rd files
Result: NOTE
checkRd: (-1) fs_search.Rd:76: Lost braces
76 | \\code{\link{fs_auth}} \code{\link{fs_browse}}
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: NOTE: 10, OK: 3
Version: 2.4.11
Check: Rd files
Result: NOTE
checkRd: (-1) nexml_get.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nexml_get.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nexml_get.Rd:32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nexml_get.Rd:33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nexml_get.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nexml_get.Rd:35: Lost braces in \itemize; meant \describe ?
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64
Current CRAN status: NOTE: 6, OK: 7
Version: 0.6.15
Check: installed package size
Result: NOTE
installed size is 5.3Mb
sub-directories of 1Mb or more:
bin 4.5Mb
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13